Rroxscaffold_2G00112490

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001064
Physical Location & Seq
Reverse (-)
37682879 .. 37683822
944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00112490.1

Sequence Viewer

Length: 252 bp
ATGTCAAAATTGGGTCTAAGAAGGTTTCTAGGTTCAAACTCGACTAATCGCAAAGAGAAGTTCCATAAATTGCTTGAATCGTATAAGCCGAGTCTTGTATACTTGCAAGGAGAGCAGCTTGAAAATGATGAAGTTGGTTCTTTTGCCTGGAGAGATGCTGATTTGCCAACTGCTGAATTTGTATCCAACATCTTTCCACATTGCCTACAACCGTGTATTGCAAATTGCTGCATTTCATTTCCCGGGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

83

Amino Acids

9.41

Weight (kDa)

6.7

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 176
AgsI TTSAA 3 cut(s) 36, 77, 122
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 115, 228
ApoI RAATTY 1 cut(s) 176
AsuC2I CCSGG 2 cut(s) 243, 244
AvaI CYCGRG 1 cut(s) 242
BbvI GCAGC 2 cut(s) 127, 215
BciT130I CCWGG 1 cut(s) 148
BciVI GTATCC 1 cut(s) 193
BcnI CCSGG 2 cut(s) 243, 244
BfaI CTAG 1 cut(s) 29
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 2 cut(s) 116, 229
BlsI GCNGC 2 cut(s) 117, 230
Bme1390I CCNGG 3 cut(s) 148, 243, 244
BmeT110I CYCGRG 1 cut(s) 242
BmrFI CCNGG 3 cut(s) 148, 243, 244
BmsI GCATC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 169
BpuMI CCSGG 2 cut(s) 243, 244
BsaJI CCNNGG 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 199
BseXI GCAGC 2 cut(s) 127, 215
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 242
BssNAI GTATAC 1 cut(s) 100
Bst1107I GTATAC 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 3 cut(s) 146, 241, 242
BstV1I GCAGC 2 cut(s) 127, 215
BstZ17I GTATAC 1 cut(s) 100
BsuI GTATCC 1 cut(s) 193
Cfr9I CCCGGG 1 cut(s) 242
CviJI RGCY 2 cut(s) 88, 118
CviKI_1 RGCY 2 cut(s) 88, 118
DdeI CTNAG 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 146
FaiI YATR 3 cut(s) 66, 84, 100
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 2 cut(s) 116, 229
Fsp4HI GCNGC 2 cut(s) 116, 229
FspBI CTAG 1 cut(s) 29
GluI GCNGC 2 cut(s) 116, 229
GsuI CTGGAG 1 cut(s) 169
HapII CCGG 1 cut(s) 243
HinfI GANTC 2 cut(s) 77, 91
HpaII CCGG 1 cut(s) 243
Hpy166II GTNNAC 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4V TGCA 3 cut(s) 106, 221, 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 17
LpnPI CCDG 2 cut(s) 133, 160
Lsp1109I GCAGC 2 cut(s) 127, 215
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 29
MluCI AATT 4 cut(s) 8, 68, 176, 223
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 210
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 3 cut(s) 148, 243, 244
MvaI CCWGG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 112
NciI CCSGG 2 cut(s) 243, 244
NmeAIII GCCGAG 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 2 cut(s) 117, 230
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
SatI GCNGC 2 cut(s) 116, 229
SchI GAGTC 1 cut(s) 100
ScrFI CCNGG 3 cut(s) 148, 243, 244
SetI ASST 3 cut(s) 26, 34, 120
SfaNI GCATC 1 cut(s) 145
SmaI CCCGGG 1 cut(s) 244
Sse9I AATT 4 cut(s) 8, 68, 176, 223
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 3 cut(s) 146, 241, 242
TaaI ACNGT 1 cut(s) 213
TaqI TCGA 1 cut(s) 41
TasI AATT 4 cut(s) 8, 68, 176, 223
TfiI GAWTC 1 cut(s) 77
TseI GCWGC 2 cut(s) 115, 228
TspDTI ATGAA 2 cut(s) 144, 225
TspMI CCCGGG 1 cut(s) 242
XapI RAATTY 1 cut(s) 176
XmaI CCCGGG 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.