Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003180.1

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

57222 .. 58139

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003180.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgggttattcaatctgggaaatagcgaaggccttcatcaacgaccactttgagctcgcagttgacctctacacccaggccatcgccgtcgaccccaacaactccgagttttgctccaaccgcgctcaggccaacatcaaatccaataatctcactggtaaaaatgtcaaaattggggctaagaagataactaagaaggtttctaggactttggtctgtaaggctgttctttggtggaagatatgggggtcgaagatttgggatttgagaaggtccaaggaccagttgggactgtcactgaaggagagaattccactaaggaaaatggaaaactggaagaagggtcaggccataatgagcccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

121

Amino Acids

13.89

Weight (kDa)

10.01

Isoelectric Point (pI)

26.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	123
AciI	CCGC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw21I	GWGCWC	1 cut(s)	57
AoxI	GGCC	4 cut(s)	30, 78, 129, 348
ApoI	RAATTY	1 cut(s)	309
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	273, 280
AvaII	GGWCC	2 cut(s)	273, 280
BanII	GRGCYC	2 cut(s)	57, 362
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	77
BfaI	CTAG	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	2 cut(s)	273, 280
BmgT120I	GGNCC	2 cut(s)	273, 280
BmrFI	CCNGG	1 cut(s)	77
BoxI	GACNNNNGTC	1 cut(s)	212
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
Bpu10I	CCTNAGC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	75, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	3 cut(s)	160, 283, 338
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	75, 276
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	3 cut(s)	160, 283, 338
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	4 cut(s)	32, 80, 131, 350
BsiHKAI	GWGCWC	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	303
BsnI	GGCC	4 cut(s)	32, 80, 131, 350
Bsp1286I	GDGCHC	2 cut(s)	57, 362
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	4 cut(s)	32, 80, 131, 350
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	123
BsrI	ACTGG	3 cut(s)	160, 283, 338
BssECI	CCNNGG	2 cut(s)	75, 276
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	4 cut(s)	126, 180, 192, 317
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	1 cut(s)	77
BstPAI	GACNNNNGTC	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	123
BsuRI	GGCC	4 cut(s)	32, 80, 131, 350
BtgZI	GCGATG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	153, 296
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	273, 280
CviJI	RGCY	8 cut(s)	32, 55, 80, 131, 179, 224, 350, 360
CviKI_1	RGCY	8 cut(s)	32, 55, 80, 131, 179, 224, 350, 360
DdeI	CTNAG	4 cut(s)	126, 180, 192, 317
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	57, 362
Eco47I	GGWCC	2 cut(s)	273, 280
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	57, 362
ErhI	CCWWGG	1 cut(s)	276
FaiI	YATR	3 cut(s)	244, 353, 364
FaqI	GGGAC	1 cut(s)	303
FblI	GTMKAC	1 cut(s)	90
FriOI	GRGCYC	2 cut(s)	57, 362
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	1 cut(s)	124
HaeIII	GGCC	4 cut(s)	32, 80, 131, 350
HhaI	GCGC	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	2 cut(s)	64, 91
HindII	GTYRAC	2 cut(s)	64, 91
Hpy166II	GTNNAC	2 cut(s)	64, 91
Hpy188I	TCNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	64, 91
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	6 cut(s)	22, 43, 190, 264, 295, 334
HpyCH4III	ACNGT	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	4 cut(s)	126, 180, 192, 317
HspAI	GCGC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	7 cut(s)	62, 89, 113, 141, 296, 319, 332
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	294
MboII	GAAGA	4 cut(s)	196, 250, 265, 349
MhlI	GDGCHC	2 cut(s)	57, 362
MluCI	AATT	2 cut(s)	171, 309
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	32
PshAI	GACNNNNGTC	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	273, 280
SacI	GAGCTC	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	89
Sau96I	GGNCC	2 cut(s)	273, 280
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	57, 362
SetI	ASST	4 cut(s)	57, 69, 201, 275
SinI	GGWCC	2 cut(s)	273, 280
Sse9I	AATT	2 cut(s)	171, 309
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	204
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	90, 251
TasI	AATT	2 cut(s)	171, 309
TscAI	CASTG	2 cut(s)	160, 303
TseFI	GTSAC	1 cut(s)	294
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	1 cut(s)	25
TspRI	CASTG	2 cut(s)	160, 303
VpaK11BI	GGWCC	2 cut(s)	273, 280
XapI	RAATTY	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.