Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000556.1

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Reverse (-)

169211 .. 170286

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000556.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atggcttccgatctcgaaaagcaggccaaggaggccctcatcgacgaccacttcgagctcgccgttgacctctacacccaggccatcgccatcgatcccaacaactccgagctctactccgaccgcgctcaggccaacatcaaagccaataatctcaccgaggcggttgcggatgcgaacaaggcgattgaattggacgcgtctttgtacaaggcctacttgcgcaagggaattgcctgcctgaagcttgaggaatatcagactgcaaaggcagcattggaacttggtgcttcttatgctccagaggaacctagattcgctaatctgataaaagagtgtgatgagctcatagcaggtgcgctgttagtttgcgacaagcttttctctataagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

131

Amino Acids

14.41

Weight (kDa)

4.57

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	344
Acc16I	TGCGCA	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	344
AccII	CGCG	2 cut(s)	126, 200
AciI	CCGC	3 cut(s)	124, 164, 170
AclWI	GGATC	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	130
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	5 cut(s)	58, 112, 247, 346, 379
AluI	AGCT	5 cut(s)	58, 112, 247, 346, 379
Alw21I	GWGCWC	3 cut(s)	60, 114, 348
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	5 cut(s)	24, 33, 81, 132, 213
ApeKI	GCWGC	1 cut(s)	272
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
AspLEI	GCGC	3 cut(s)	128, 225, 361
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	148
BanII	GRGCYC	3 cut(s)	60, 114, 348
Bbv12I	GWGCWC	3 cut(s)	60, 114, 348
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	2 cut(s)	92, 98
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	344
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	163
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpmI	CTGGAG	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	269
Bsa29I	ATCGAT	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	27, 78, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	80
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	3 cut(s)	27, 78, 159
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	284
Bsh1236I	CGCG	2 cut(s)	126, 200
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	5 cut(s)	26, 35, 83, 134, 215
BshVI	ATCGAT	1 cut(s)	93
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	3 cut(s)	60, 114, 348
BslI	CCNNNNNNNGG	1 cut(s)	130
BsnI	GGCC	5 cut(s)	26, 35, 83, 134, 215
Bsp1286I	GDGCHC	3 cut(s)	60, 114, 348
Bsp1407I	TGTACA	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	10, 94
BspACI	CCGC	3 cut(s)	124, 164, 170
BspANI	GGCC	5 cut(s)	26, 35, 83, 134, 215
BspCNI	CTCAG	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	2 cut(s)	126, 200
BspLI	GGNNCC	1 cut(s)	309
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	207
BssECI	CCNNGG	3 cut(s)	27, 78, 159
BssMI	GATC	2 cut(s)	10, 94
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	80
BstAUI	TGTACA	1 cut(s)	207
BstC8I	GCNNGC	3 cut(s)	24, 60, 238
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	2 cut(s)	126, 200
BstHHI	GCGC	3 cut(s)	128, 225, 361
BstKTI	GATC	2 cut(s)	13, 97
BstMBI	GATC	2 cut(s)	10, 94
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 182, 272, 296
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstUI	CGCG	2 cut(s)	126, 200
BstV1I	GCAGC	1 cut(s)	284
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	5 cut(s)	26, 35, 83, 134, 215
BsuTUI	ATCGAT	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	3 cut(s)	24, 60, 238
CfoI	GCGC	3 cut(s)	128, 225, 361
Cfr13I	GGNCC	1 cut(s)	34
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	2 cut(s)	189, 206
Csp6I	GTAC	1 cut(s)	208
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	2 cut(s)	12, 96
DpnII	GATC	2 cut(s)	10, 94
Ecl136II	GAGCTC	3 cut(s)	58, 112, 346
Eco130I	CCWWGG	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	215
Eco24I	GRGCYC	3 cut(s)	60, 114, 348
Eco53kI	GAGCTC	3 cut(s)	58, 112, 346
Eco57I	CTGAAG	1 cut(s)	263
EcoICRI	GAGCTC	3 cut(s)	58, 112, 346
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	3 cut(s)	60, 114, 348
ErhI	CCWWGG	1 cut(s)	27
FaiI	YATR	3 cut(s)	297, 350, 389
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	3 cut(s)	60, 114, 348
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	312
FspI	TGCGCA	1 cut(s)	224
GlaI	GCGC	3 cut(s)	127, 224, 360
GluI	GCNGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	5 cut(s)	26, 35, 83, 134, 215
HgaI	GACGC	2 cut(s)	189, 206
HhaI	GCGC	3 cut(s)	128, 225, 361
Hin6I	GCGC	3 cut(s)	126, 223, 359
HinP1I	GCGC	3 cut(s)	126, 223, 359
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	2 cut(s)	245, 377
HinfI	GANTC	1 cut(s)	315
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	5 cut(s)	10, 109, 121, 261, 327
Hpy188III	TCNNGA	2 cut(s)	14, 302
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 182, 272, 296
HpyF3I	CTNAG	1 cut(s)	129
HspAI	GCGC	3 cut(s)	126, 223, 359
Kzo9I	GATC	2 cut(s)	10, 94
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	8 cut(s)	8, 65, 92, 116, 250, 254, 315, 339
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	312
MalI	GATC	2 cut(s)	12, 96
MboI	GATC	2 cut(s)	10, 94
MhlI	GDGCHC	3 cut(s)	60, 114, 348
MluCI	AATT	2 cut(s)	191, 231
MluI	ACGCGT	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	6 cut(s)	25, 47, 80, 154, 244, 298
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	2 cut(s)	126, 200
MwoI	GCNNNNNNNGC	4 cut(s)	32, 182, 272, 296
NdeII	GATC	2 cut(s)	10, 94
NlaIV	GGNNCC	1 cut(s)	309
NsbI	TGCGCA	1 cut(s)	224
PaqCI	CACCTGC	1 cut(s)	344
PceI	AGGCCT	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 60
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	1 cut(s)	274
Psp124BI	GAGCTC	3 cut(s)	60, 114, 348
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	3 cut(s)	60, 114, 348
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	2 cut(s)	10, 94
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	3 cut(s)	60, 114, 348
SetI	ASST	8 cut(s)	60, 72, 114, 249, 313, 348, 358, 381
SfaNI	GCATC	1 cut(s)	163
SfiI	GGCCNNNNNGGCC	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	191, 231
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	3 cut(s)	124, 164, 170
SspMI	CTAG	1 cut(s)	312
SstI	GAGCTC	3 cut(s)	60, 114, 348
StuI	AGGCCT	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	27
TaqI	TCGA	4 cut(s)	15, 42, 54, 93
TasI	AATT	2 cut(s)	191, 231
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	315
TseI	GCWGC	1 cut(s)	272
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.