RLG00000001781

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001064
Physical Location & Seq
Reverse (-)
20727785 .. 20731219
3435 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001781

Sequence Viewer

Length: 444 bp
ATGATTGTGGAGTACCCCGGGACTGTGCCAGGGAAAGTGTTGTCCTTTGTGGGGTGCTACATGGATGTTGTCACTGCCAATCCTGATTATTGGCTTTGCTTCTCTGGTTCCCGACCTCGACCCGATTCCCTTGGAGCGAAGCTGTTGGAGAAATCTGCTAAGACTCAGAACCCGAAGCGAAAACTCAGAACTCGAAGGTTTCTGGGTAAGCAGGTTCAAACTCTAACTAACCGCAAAGAGAAGTTCCATAAATTGCTTGAATCGTACAAGCCGAGTCTTGTATACTTGCAAGGAGAGCAGCTTGAAAATGATGAAGTTGGTTCTTTTGCCTGGAGAGATGCTGATTTGCCAAGTGCTGAATCTATATCCGACATCTTTCCACATTGCCTACAACTATGTTCCCACAAGAAGTCCCTGAAAGAACCATTGGTTTTTCTACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

148

Amino Acids

16.77

Weight (kDa)

9.19

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
AccI GTMKAC 1 cut(s) 282
AciI CCGC 1 cut(s) 232
AfaI GTAC 2 cut(s) 14, 266
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 3 cut(s) 218, 260, 305
AjnI CCWGG 2 cut(s) 28, 329
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 2 cut(s) 142, 301
AluI AGCT 2 cut(s) 142, 301
Ama87I CYCGRG 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 298
AsuC2I CCSGG 2 cut(s) 18, 19
AvaI CYCGRG 1 cut(s) 17
BbvI GCAGC 1 cut(s) 310
BciT130I CCWGG 2 cut(s) 30, 331
BcnI CCSGG 2 cut(s) 18, 19
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 1 cut(s) 299
BlsI GCNGC 1 cut(s) 300
Bme1390I CCNGG 4 cut(s) 18, 19, 30, 331
BmeT110I CYCGRG 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 4 cut(s) 18, 19, 30, 331
BmsI GCATC 1 cut(s) 328
BpmI CTGGAG 1 cut(s) 352
BpuMI CCSGG 2 cut(s) 18, 19
BsaJI CCNNGG 4 cut(s) 16, 17, 29, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 382
BseBI CCWGG 2 cut(s) 30, 331
BseDI CCNNGG 4 cut(s) 16, 17, 29, 130
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 2 cut(s) 179, 199
BseXI GCAGC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 2 cut(s) 34, 397
BslI CCNNNNNNNGG 1 cut(s) 51
BsmFI GGGAC 2 cut(s) 34, 397
BsoBI CYCGRG 1 cut(s) 17
BspACI CCGC 1 cut(s) 232
BspCNI CTCAG 2 cut(s) 178, 198
BspLI GGNNCC 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 382
BssECI CCNNGG 4 cut(s) 16, 17, 29, 130
BssNAI GTATAC 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 130
Bst1107I GTATAC 1 cut(s) 283
Bst2UI CCWGG 2 cut(s) 30, 331
Bst4CI ACNGT 1 cut(s) 25
BstDEI CTNAG 3 cut(s) 159, 165, 185
BstF5I GGATG 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 2 cut(s) 30, 331
BstSCI CCNGG 4 cut(s) 16, 17, 28, 329
BstV1I GCAGC 1 cut(s) 310
BstZ17I GTATAC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 439
BveI ACCTGC 1 cut(s) 202
Cfr9I CCCGGG 1 cut(s) 17
Csp6I GTAC 2 cut(s) 13, 265
CviAII CATG 1 cut(s) 61
CviJI RGCY 4 cut(s) 94, 142, 271, 301
CviKI_1 RGCY 4 cut(s) 94, 142, 271, 301
CviQI GTAC 2 cut(s) 13, 265
DdeI CTNAG 3 cut(s) 159, 165, 185
Eco130I CCWWGG 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 28, 329
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 64
FaiI YATR 5 cut(s) 62, 249, 283, 365, 397
FaqI GGGAC 2 cut(s) 34, 397
FatI CATG 1 cut(s) 60
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 299
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 299
GluI GCNGC 1 cut(s) 299
GsuI CTGGAG 1 cut(s) 352
HapII CCGG 1 cut(s) 18
Hin1II CATG 1 cut(s) 64
HinfI GANTC 5 cut(s) 125, 163, 260, 274, 359
HpaII CCGG 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 3 cut(s) 168, 188, 370
Hpy188III TCNNGA 2 cut(s) 83, 111
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 189
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 3 cut(s) 159, 165, 185
Hsp92II CATG 1 cut(s) 64
LmnI GCTCC 1 cut(s) 134
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 328
MaeIII GTNAC 1 cut(s) 70
MluCI AATT 1 cut(s) 251
MlyI GAGTC 2 cut(s) 157, 283
MmeI TCCRAC 2 cut(s) 126, 393
MnlI CCTC 1 cut(s) 126
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 4 cut(s) 18, 19, 30, 331
MvaI CCWGG 2 cut(s) 30, 331
MwoI GCNNNNNNNGC 1 cut(s) 295
NciI CCSGG 2 cut(s) 18, 19
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 109
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 269
PfeI GAWTC 3 cut(s) 125, 260, 359
PkrI GCNGC 1 cut(s) 300
PleI GAGTC 2 cut(s) 157, 282
PpsI GAGTC 2 cut(s) 157, 282
Psp6I CCWGG 2 cut(s) 28, 329
PspGI CCWGG 2 cut(s) 28, 329
PspN4I GGNNCC 1 cut(s) 109
RsaI GTAC 2 cut(s) 14, 266
RsaNI GTAC 2 cut(s) 13, 265
SatI GCNGC 1 cut(s) 299
SchI GAGTC 2 cut(s) 157, 283
ScrFI CCNGG 4 cut(s) 18, 19, 30, 331
SetI ASST 5 cut(s) 118, 144, 200, 216, 303
SfaNI GCATC 1 cut(s) 328
SmaI CCCGGG 1 cut(s) 19
Sse9I AATT 1 cut(s) 251
SsiI CCGC 1 cut(s) 232
StyD4I CCNGG 4 cut(s) 16, 17, 28, 329
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 25
TaqI TCGA 2 cut(s) 118, 193
TasI AATT 1 cut(s) 251
TfiI GAWTC 3 cut(s) 125, 260, 359
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 298
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 327
TspMI CCCGGG 1 cut(s) 17
TspRI CASTG 1 cut(s) 79
XmaI CCCGGG 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.