Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Forward (+)

28989899 .. 28992970

Gene Structure 3072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G302800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCTTCCGATCTCGAAAAGAGGGCCAAGGAGGCGTTCATCGACGACCACTTCGACTTGGCCGTTGAACTCTACACCCAGGCCATCGCTCACAACCCTCAAAACGCCGAGCTCTACTCAGACCGTGCCCAGGCCAACATCAAATCCAATAATCTCACTGAGGCTGTTTCGGATGCAAACAAGGCAATTGAGTTGGACTCATCATTGTCTAAAGCGTACTTGCGCAAAGGAATTGCCTGCTTCAAGCTTGAGGAATATCAGACTGCAAAGGCAGCCCTGGAAATTGGTGCTTCTTTGGCGCCAGAAGAGACCAGATTTGTCAAATTGATAAAAGACTGCGATGAGAAAATTGCAGAGGAAACCGGTGTTTTACCAGACCTTTCATTGGAAAAAACCAGTACAGAGGATGTTATATCTACAAAAGATGTTCAGCCTGTGAGTGATCCTACCAATCAGTTGACTGTAGCATTTGTCAAACCAAAATACAGGCATGAATTCTACCAGAAGCCAGACGAAGTGGTGGTGACTATATTTGCCAAGGGCATACCAGCCAAAGATGTTCATATTGACTTTGGTGAACAAATACTAAGTGTTCGCATTGATGTTGCTGGTGAGGATCCATATCATTTTCAGCCTCGCTTATTTGGAAAGATAATACCTAAAAAGTGCAGATATGAAGTTTTGTCCACCAAAGTTGAAATTCGCCTGGCAAAAGCTGATCCATTACACTGGACATCTCTTGAATTCAGCAAGGATAACTCTGTTGTGCCAAGGGTTAGTGTGCCAGTTATTGGAGAGCAAAGGCCATCTTACCCATCCTCAAAACCAAAAGTGGTAGACTGGGATAAGCTTGAAGCCGAAGTGAAGAAGGAGGAAAAAGAAGAGAAGCTTGATGGTGATGCGGCTTTGAACAAATTTTTCCAGGACATATATAAGGATGCTGATGAGGACACTAGAAGGGCCATGAGAAAATCTTTTGTGGAGTCGAATGGGACAGTGCTTTCGACAAACTGGAAAGAAGTGGGAAACAAGAAGGTTGAGGGAAGTGCTCCAGATGGCATGGAGATGAAGAAATGGGAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

362

Amino Acids

40.75

Weight (kDa)

5.23

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	298
AccB7I	CCANNNNNTGG	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	837
AciI	CCGC	1 cut(s)	902
AclWI	GGATC	4 cut(s)	437, 611, 624, 713
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	4 cut(s)	494, 699, 743, 914
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	3 cut(s)	218, 400, 1082
AfiI	CCNNNNNNNGG	3 cut(s)	130, 385, 791
AgeI	ACCGGT	1 cut(s)	362
AgsI	TTSAA	6 cut(s)	68, 244, 698, 743, 854, 910
AjnI	CCWGG	5 cut(s)	78, 129, 276, 705, 921
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	5 cut(s)	112, 247, 716, 850, 889
AluI	AGCT	5 cut(s)	112, 247, 716, 850, 889
Alw21I	GWGCWC	2 cut(s)	114, 1051
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	4 cut(s)	437, 611, 624, 713
AoxI	GGCC	6 cut(s)	24, 60, 81, 132, 803, 960
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	4 cut(s)	494, 699, 743, 914
ArsI	GACNNNNNNTTYG	4 cut(s)	35, 67, 985, 1017
AsiGI	ACCGGT	1 cut(s)	362
AspLEI	GCGC	2 cut(s)	225, 301
AspS9I	GGNCC	2 cut(s)	24, 960
AsuHPI	GGTGA	4 cut(s)	535, 587, 623, 908
BaeGI	GKGCMC	1 cut(s)	130
BamHI	GGATCC	1 cut(s)	616
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	2 cut(s)	114, 1051
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	5 cut(s)	92, 814, 823, 887, 1049
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	5 cut(s)	80, 131, 278, 707, 923
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	1 cut(s)	954
BfmI	CTRYAG	1 cut(s)	462
BfoI	RGCGCY	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	2 cut(s)	273, 903
BlsI	GCNGC	2 cut(s)	274, 904
BmcAI	AGTACT	1 cut(s)	1082
Bme1390I	CCNGG	5 cut(s)	80, 131, 278, 707, 923
BmgT120I	GGNCC	2 cut(s)	24, 960
BmiI	GGNNCC	2 cut(s)	300, 618
BmrFI	CCNGG	5 cut(s)	80, 131, 278, 707, 923
BmrI	ACTGGG	1 cut(s)	850
BmsI	GCATC	3 cut(s)	163, 889, 928
BmuI	ACTGGG	1 cut(s)	850
BplI	GAGNNNNNCTC	4 cut(s)	101, 133, 182, 214
BpmI	CTGGAG	1 cut(s)	1035
BpuEI	CTTGAG	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	621
BsaHI	GRCGYC	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	6 cut(s)	27, 78, 129, 276, 537, 770
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 385, 791
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	5 cut(s)	396, 734, 785, 845, 1016
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	5 cut(s)	80, 131, 278, 707, 923
BseDI	CCNNGG	6 cut(s)	27, 78, 129, 276, 537, 770
BseGI	GGATG	4 cut(s)	178, 412, 815, 943
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	3 cut(s)	130, 385, 791
BseMII	CTCAG	2 cut(s)	132, 150
BseNI	ACTGG	5 cut(s)	396, 734, 785, 845, 1016
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	688
BshFI	GGCC	6 cut(s)	26, 62, 83, 134, 805, 962
BshNI	GGYRCC	1 cut(s)	298
BshTI	ACCGGT	1 cut(s)	362
BsiHKAI	GWGCWC	2 cut(s)	114, 1051
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	1006
BslI	CCNNNNNNNGG	3 cut(s)	130, 385, 791
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	1006
BsnI	GGCC	6 cut(s)	26, 62, 83, 134, 805, 962
Bso31I	GGTCTC	1 cut(s)	302
Bsp1286I	GDGCHC	3 cut(s)	114, 130, 1051
Bsp143I	GATC	4 cut(s)	10, 442, 616, 718
BspACI	CCGC	1 cut(s)	902
BspANI	GGCC	6 cut(s)	26, 62, 83, 134, 805, 962
BspCNI	CTCAG	2 cut(s)	131, 151
BspLI	GGNNCC	2 cut(s)	300, 618
BspPI	GGATC	4 cut(s)	437, 611, 624, 713
BspT107I	GGYRCC	1 cut(s)	298
BspTNI	GGTCTC	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	5 cut(s)	396, 734, 785, 845, 1016
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	6 cut(s)	27, 78, 129, 276, 537, 770
BssMI	GATC	4 cut(s)	10, 442, 616, 718
BssNI	GRCGYC	1 cut(s)	299
BssT1I	CCWWGG	3 cut(s)	27, 537, 770
Bst2UI	CCWGG	5 cut(s)	80, 131, 278, 707, 923
Bst4CI	ACNGT	3 cut(s)	125, 463, 997
Bst6I	CTCTTC	2 cut(s)	300, 876
BstACI	GRCGYC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	3 cut(s)	118, 159, 587
BstF5I	GGATG	4 cut(s)	178, 412, 815, 943
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	2 cut(s)	225, 301
BstKTI	GATC	4 cut(s)	13, 445, 619, 721
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	4 cut(s)	10, 442, 616, 718
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 182, 272, 296
BstNI	CCWGG	5 cut(s)	80, 131, 278, 707, 923
BstSCI	CCNGG	5 cut(s)	78, 129, 276, 705, 921
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	616
BstXI	CCANNNNNNTGG	1 cut(s)	729
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	6 cut(s)	26, 62, 83, 134, 805, 962
BtgZI	GCGATG	2 cut(s)	70, 354
BtsCI	GGATG	4 cut(s)	178, 412, 815, 943
BtsIMutI	CAGTG	3 cut(s)	156, 727, 1002
Cac8I	GCNNGC	1 cut(s)	238
CfoI	GCGC	2 cut(s)	225, 301
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	24, 960
Csp6I	GTAC	3 cut(s)	217, 399, 1081
CspAI	ACCGGT	1 cut(s)	362
CspCI	CAANNNNNGTGG	2 cut(s)	676, 711
CviAII	CATG	3 cut(s)	491, 964, 1060
CviQI	GTAC	3 cut(s)	217, 399, 1081
DdeI	CTNAG	3 cut(s)	118, 159, 587
DinI	GGCGCC	1 cut(s)	300
DpnI	GATC	4 cut(s)	12, 444, 618, 720
DpnII	GATC	4 cut(s)	10, 442, 616, 718
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	2 cut(s)	300, 876
EarI	CTCTTC	2 cut(s)	300, 876
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	3 cut(s)	27, 537, 770
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	302
Eco53kI	GAGCTC	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	112
EcoRI	GAATTC	2 cut(s)	494, 743
EcoRII	CCWGG	5 cut(s)	78, 129, 276, 705, 921
EcoT14I	CCWWGG	3 cut(s)	27, 537, 770
EcoT38I	GRGCYC	1 cut(s)	114
EgeI	GGCGCC	1 cut(s)	300
EheI	GGCGCC	1 cut(s)	300
ErhI	CCWWGG	3 cut(s)	27, 537, 770
FaeI	CATG	3 cut(s)	494, 967, 1063
FalI	AAGNNNNNCTT	4 cut(s)	793, 825, 873, 905
FaqI	GGGAC	1 cut(s)	1006
FatI	CATG	3 cut(s)	490, 963, 1059
FblI	GTMKAC	1 cut(s)	837
Fnu4HI	GCNGC	2 cut(s)	273, 903
FokI	GGATG	4 cut(s)	185, 419, 802, 950
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	273, 903
FspBI	CTAG	1 cut(s)	954
FspI	TGCGCA	1 cut(s)	224
GlaI	GCGC	2 cut(s)	224, 300
GluI	GCNGC	2 cut(s)	273, 903
GsuI	CTGGAG	1 cut(s)	1035
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	6 cut(s)	26, 62, 83, 134, 805, 962
HapII	CCGG	1 cut(s)	363
HhaI	GCGC	2 cut(s)	225, 301
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	3 cut(s)	494, 967, 1063
Hin6I	GCGC	2 cut(s)	223, 299
HinP1I	GCGC	2 cut(s)	223, 299
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HindIII	AAGCTT	3 cut(s)	245, 848, 887
HinfI	GANTC	2 cut(s)	197, 983
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	4 cut(s)	535, 587, 623, 908
Hpy166II	GTNNAC	4 cut(s)	459, 578, 687, 838
Hpy188I	TCNGA	4 cut(s)	10, 121, 172, 261
Hpy188III	TCNNGA	3 cut(s)	14, 740, 1052
Hpy8I	GTNNAC	4 cut(s)	459, 578, 687, 838
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	862, 951, 1027
HpyCH4III	ACNGT	3 cut(s)	125, 463, 997
HpyCH4V	TGCA	4 cut(s)	176, 266, 353, 669
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 182, 272, 296
HpyF3I	CTNAG	3 cut(s)	118, 159, 587
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	3 cut(s)	494, 967, 1063
HspAI	GCGC	2 cut(s)	223, 299
KasI	GGCGCC	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	10, 442, 616, 718
LmnI	GCTCC	1 cut(s)	1054
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	3 cut(s)	163, 889, 928
MaeI	CTAG	1 cut(s)	954
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	4 cut(s)	12, 444, 618, 720
MboI	GATC	4 cut(s)	10, 442, 616, 718
MboII	GAAGA	4 cut(s)	317, 877, 893, 1081
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	3 cut(s)	114, 130, 1051
MluCI	AATT	9 cut(s)	186, 231, 282, 323, 348, 494, 699, 743, 914
Mly113I	GGCGCC	1 cut(s)	299
MlyI	GAGTC	2 cut(s)	191, 992
MmeI	TCCRAC	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	1064
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	5 cut(s)	80, 131, 278, 707, 923
MunI	CAATTG	1 cut(s)	186
MvaI	CCWGG	5 cut(s)	80, 131, 278, 707, 923
MwoI	GCNNNNNNNGC	4 cut(s)	32, 182, 272, 296
NarI	GGCGCC	1 cut(s)	299
NdeII	GATC	4 cut(s)	10, 442, 616, 718
NlaIII	CATG	3 cut(s)	494, 967, 1063
NlaIV	GGNNCC	2 cut(s)	300, 618
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	523
NsbI	TGCGCA	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 60
PflMI	CCANNNNNTGG	1 cut(s)	791
PfoI	TCCNGGA	1 cut(s)	921
PinAI	ACCGGT	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	274, 904
PleI	GAGTC	2 cut(s)	191, 991
PluTI	GGCGCC	1 cut(s)	302
PpsI	GAGTC	2 cut(s)	191, 991
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	5 cut(s)	78, 129, 276, 705, 921
PspGI	CCWGG	5 cut(s)	78, 129, 276, 705, 921
PspN4I	GGNNCC	2 cut(s)	300, 618
PspPI	GGNCC	2 cut(s)	24, 960
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	3 cut(s)	218, 400, 1082
RsaNI	GTAC	3 cut(s)	217, 399, 1081
RseI	CAYNNNNRTG	1 cut(s)	1064
SacI	GAGCTC	1 cut(s)	114
SatI	GCNGC	2 cut(s)	273, 903
Sau3AI	GATC	4 cut(s)	10, 442, 616, 718
Sau96I	GGNCC	2 cut(s)	24, 960
ScaI	AGTACT	1 cut(s)	1082
SchI	GAGTC	2 cut(s)	191, 992
ScrFI	CCNGG	5 cut(s)	80, 131, 278, 707, 923
SduI	GDGCHC	3 cut(s)	114, 130, 1051
SetI	ASST	8 cut(s)	114, 249, 381, 661, 718, 852, 891, 1038
SfaNI	GCATC	3 cut(s)	163, 889, 928
SfcI	CTRYAG	1 cut(s)	462
SfoI	GGCGCC	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	1064
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	9 cut(s)	186, 231, 282, 323, 348, 494, 699, 743, 914
SsiI	CCGC	1 cut(s)	902
SspDI	GGCGCC	1 cut(s)	298
SspMI	CTAG	1 cut(s)	954
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	5 cut(s)	78, 129, 276, 705, 921
StyI	CCWWGG	3 cut(s)	27, 537, 770
TaaI	ACNGT	3 cut(s)	125, 463, 997
TaqI	TCGA	5 cut(s)	15, 42, 54, 986, 1004
TasI	AATT	9 cut(s)	186, 231, 282, 323, 348, 494, 699, 743, 914
TatI	WGTACW	2 cut(s)	398, 1080
TauI	GCSGC	1 cut(s)	905
TscAI	CASTG	3 cut(s)	163, 734, 1002
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	6 cut(s)	28, 372, 507, 551, 690, 1082
TspRI	CASTG	3 cut(s)	163, 734, 1002
Van91I	CCANNNNNTGG	1 cut(s)	791
XapI	RAATTY	4 cut(s)	494, 699, 743, 914
XmiI	GTMKAC	1 cut(s)	837
XspI	CTAG	1 cut(s)	954
ZrmI	AGTACT	1 cut(s)	1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.