Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001064

Physical Location & Seq

Genomic Coordinates Forward (+)

63668023 .. 63671810

Gene Structure 3788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG422500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGACGCTCCAATTGCCTGCCTGAAGCTCGAGGAATATCAGACTGCAAAGGCAGCATTGGAACTTGGTGCTTCTCATGCTCCAGAGGAACCTAGATTCGCTAATCTGATAAAAGAGTGTGATGAGCTCATTGCAGCGGAAAATAACGAGCTACCAAAGCAACCAATGGAAACAACCACTACAGAGAGTGTTACAGCCGCAAAAGATGTTGAGCCAGTAAACCTGCTTTCCGATCAGGTGACAGTAGCACCTGTCAAACCAAAATACAGGCATGAATTCTACCAGAAGCCTGAAGAAGTGGCCGTGACTATATTGGCAAAGGGCATACCAGCCAAAGATGTTGCTGTTGAATTTGGTGAACAAATATTAAGTGTCAGCATTGATGTTCCTGGTGAAGATACATATCATTTTCAGCCTCGCCTGTTTGGGAAGATCATTCCTGAAAAGTGCAGATTTGAAGTTTTGTCAACCAAGGTTGAAATTCGCCTGGCCAAAGCTGAAGCCATACAGTGGACATCTCTTGAGTTCAGCAAGGATAACCCTGTTCCTCTAAAGGAGAAAGATGAGAAGCTTGATGGCGATGCAGCTTTGAACAAATTTTTCCAAGACATATACAAGGATGCTGATGAGGACACAAGAAGGGCCATGAGAAAATCTTTTGTGGAGTCAAACGGGACGGTGCTTTCGACAAACTGGAAAGAAGTGGGCAACAAGAAGGTCGAGGGAAGTGCCCCTGATGGTATGGAGATGAAGAAATGGGAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04621 ko04626 map04621 map04626

Pfam Domains

Protein Families

CS SGS TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

255

Amino Acids

28.64

Weight (kDa)

4.89

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	90 - 165	6.7e-12	CS domain
SGS	PF05002	185 - 253	3.9e-32	SGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11260 AT4G23570 AT4G23570 AT4G23570
fragaria_vesca	FvH4_7g30490 FvH4_7g30490
malus_domestica	MD01G1210400.v1.1 MD07G1280600.v1.1
prunus_persica	Prupe.2G302800_v2.0.a1
pyrus_communis	pycom01g22090 pycom07g25520
rosa_chinensis	RchiOBHm_Chr1g0378891 RchiOBHm_Chr4g0413661 RchiOBHm_Chr5g0050331 RchiOBHm_Chr6g0280791
rosa_laevigata	RLG00000001781 RLG00000002477 RLG00000018439 RLG00000019258 RLG00000026411 RLG00000032290 RLG00000033050 RLG00000036676
rosa_multiflora	Rmu_co8382307.1_g000001 Rmu_co8488007.1_g000001 Rmu_sc0000055.1_g000012 Rmu_sc0000556.1_g000036 Rmu_sc0001292.1_g000022 Rmu_sc0001329.1_g000015 Rmu_sc0002088.1_g000010 Rmu_sc0003092.1_g000027 Rmu_sc0003180.1_g000015 Rmu_sc0009862.1_g000008 Rmu_sc0011178.1_g000003 Rmu_ssc0000359.1_g000037
rosa_roxburghii	Rroxscaffold_2G00112490 Rroxscaffold_4G00280290 Rroxscaffold_5G00336340
rosa_rugosa	Rorug01G0280100 Rorug01G0410900.1
rosa_samantha	Rh1AG433700 Rh1BG391300 Rh1CG404000 Rh1DG422500 Rh2AG415200 Rh2BG429800 Rh2CG261700 Rh2CG359200 Rh2CG401500 Rh2DG093100 Rh3CG096600 Rh4CG192700 Rh5AG208200 Rh5AG436500 Rh5BG107300 Rh6CG386700 Rh6DG223200 Rh7DG205600 Rh7DG205700
rosa_wichuraiana	Rw1G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	231
AccB7I	CCANNNNNTGG	1 cut(s)	510
AciI	CCGC	2 cut(s)	137, 198
AcoI	YGGCCR	2 cut(s)	300, 489
AcsI	RAATTY	4 cut(s)	275, 350, 480, 596
AcuI	CTGAAG	3 cut(s)	44, 312, 519
AfaI	GTAC	1 cut(s)	764
AfiI	CCNNNNNNNGG	1 cut(s)	510
AgsI	TTSAA	4 cut(s)	350, 458, 479, 592
AjnI	CCWGG	2 cut(s)	388, 486
AluBI	AGCT	6 cut(s)	28, 127, 151, 497, 571, 587
AluI	AGCT	6 cut(s)	28, 127, 151, 497, 571, 587
Alw21I	GWGCWC	1 cut(s)	129
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	3 cut(s)	300, 489, 642
ApeKI	GCWGC	3 cut(s)	53, 134, 584
ApoI	RAATTY	4 cut(s)	275, 350, 480, 596
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
AspS9I	GGNCC	1 cut(s)	642
AsuHPI	GGTGA	3 cut(s)	250, 368, 404
AvaI	CYCGRG	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	733
BalI	TGGCCA	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	65, 146, 596
BccI	CCATC	2 cut(s)	569, 731
BceAI	ACGGC	1 cut(s)	287
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BciT130I	CCWGG	2 cut(s)	390, 488
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	231
BisI	GCNGC	4 cut(s)	54, 135, 198, 585
BlsI	GCNGC	4 cut(s)	55, 136, 199, 586
BmcAI	AGTACT	1 cut(s)	764
Bme1390I	CCNGG	2 cut(s)	390, 488
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	642
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	390, 488
BmsI	GCATC	2 cut(s)	571, 610
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	1 cut(s)	510
Bse1I	ACTGG	2 cut(s)	215, 698
Bse3DI	GCAATG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	390, 488
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	1 cut(s)	625
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	1 cut(s)	510
BseMI	GCAATG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	215, 698
BseSI	GKGCMC	1 cut(s)	733
BseXI	GCAGC	3 cut(s)	65, 146, 596
BsgI	GTGCAG	1 cut(s)	469
BshFI	GGCC	3 cut(s)	302, 491, 644
BsiHKAI	GWGCWC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	688
BslI	CCNNNNNNNGG	1 cut(s)	510
BsmFI	GGGAC	1 cut(s)	688
BsnI	GGCC	3 cut(s)	302, 491, 644
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	129, 733
Bsp143I	GATC	2 cut(s)	232, 432
BspACI	CCGC	2 cut(s)	137, 198
BspANI	GGCC	3 cut(s)	302, 491, 644
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	215, 698
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	2 cut(s)	232, 432
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	2 cut(s)	390, 488
Bst4CI	ACNGT	3 cut(s)	244, 510, 679
BstC8I	GCNNGC	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	625
BstKTI	GATC	2 cut(s)	235, 435
BstMBI	GATC	2 cut(s)	232, 432
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 53, 77, 157
BstNI	CCWGG	2 cut(s)	390, 488
BstSCI	CCNGG	2 cut(s)	388, 486
BstSFI	CTRYAG	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	733
BstV1I	GCAGC	3 cut(s)	65, 146, 596
BsuRI	GGCC	3 cut(s)	302, 491, 644
BtgZI	GCGATG	1 cut(s)	594
BtsCI	GGATG	1 cut(s)	625
BtsIMutI	CAGTG	1 cut(s)	515
BveI	ACCTGC	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	642
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	763
CviAII	CATG	3 cut(s)	77, 272, 646
CviQI	GTAC	1 cut(s)	763
DpnI	GATC	2 cut(s)	234, 434
DpnII	GATC	2 cut(s)	232, 432
EaeI	YGGCCR	2 cut(s)	300, 489
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	127
Eco57I	CTGAAG	3 cut(s)	44, 312, 519
Eco88I	CYCGRG	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	388, 486
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	3 cut(s)	80, 275, 649
FaqI	GGGAC	1 cut(s)	688
FatI	CATG	3 cut(s)	76, 271, 645
Fnu4HI	GCNGC	4 cut(s)	54, 135, 198, 585
FokI	GGATG	1 cut(s)	632
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	4 cut(s)	54, 135, 198, 585
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	4 cut(s)	54, 135, 198, 585
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	3 cut(s)	302, 491, 644
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	80, 275, 649
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HindIII	AAGCTT	1 cut(s)	569
HinfI	GANTC	2 cut(s)	96, 665
HphI	GGTGA	3 cut(s)	250, 368, 404
Hpy166II	GTNNAC	4 cut(s)	220, 359, 468, 513
Hpy188I	TCNGA	3 cut(s)	42, 108, 232
Hpy188III	TCNNGA	3 cut(s)	83, 440, 521
Hpy8I	GTNNAC	4 cut(s)	220, 359, 468, 513
HpyAV	CCTTC	2 cut(s)	633, 709
HpyCH4III	ACNGT	3 cut(s)	244, 510, 679
HpyCH4V	TGCA	4 cut(s)	47, 134, 450, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 53, 77, 157
Hsp92II	CATG	3 cut(s)	80, 275, 649
Kzo9I	GATC	2 cut(s)	232, 432
LmnI	GCTCC	2 cut(s)	13, 85
Lsp1109I	GCAGC	3 cut(s)	65, 146, 596
LweI	GCATC	2 cut(s)	571, 610
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	3 cut(s)	190, 238, 304
MalI	GATC	2 cut(s)	234, 434
MboI	GATC	2 cut(s)	232, 432
MboII	GAAGA	4 cut(s)	305, 407, 442, 763
MfeI	CAATTG	1 cut(s)	12
MhlI	GDGCHC	2 cut(s)	129, 733
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	5 cut(s)	12, 275, 350, 480, 596
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	674
MnlI	CCTC	6 cut(s)	25, 79, 426, 558, 622, 715
Mox20I	TGGCCA	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	390, 488
MunI	CAATTG	1 cut(s)	12
MvaI	CCWGG	2 cut(s)	390, 488
MwoI	GCNNNNNNNGC	4 cut(s)	14, 53, 77, 157
NdeII	GATC	2 cut(s)	232, 432
NlaIII	CATG	3 cut(s)	80, 275, 649
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	238, 304
PaeR7I	CTCGAG	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	683
PfeI	GAWTC	1 cut(s)	96
PflMI	CCANNNNNTGG	1 cut(s)	510
PkrI	GCNGC	4 cut(s)	55, 136, 199, 586
PleI	GAGTC	1 cut(s)	673
PpsI	GAGTC	1 cut(s)	673
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	2 cut(s)	388, 486
PspGI	CCWGG	2 cut(s)	388, 486
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	642
PspXI	VCTCGAGB	1 cut(s)	29
RsaI	GTAC	1 cut(s)	764
RsaNI	GTAC	1 cut(s)	763
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	4 cut(s)	54, 135, 198, 585
Sau3AI	GATC	2 cut(s)	232, 432
Sau96I	GGNCC	1 cut(s)	642
ScaI	AGTACT	1 cut(s)	764
SchI	GAGTC	1 cut(s)	674
ScrFI	CCNGG	2 cut(s)	390, 488
SduI	GDGCHC	2 cut(s)	129, 733
SfaNI	GCATC	2 cut(s)	571, 610
SfcI	CTRYAG	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	29
SmlI	CTYRAG	2 cut(s)	29, 521
SmoI	CTYRAG	2 cut(s)	29, 521
Sse9I	AATT	5 cut(s)	12, 275, 350, 480, 596
SsiI	CCGC	2 cut(s)	137, 198
SspI	AATATT	1 cut(s)	366
SspMI	CTAG	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	388, 486
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	3 cut(s)	244, 510, 679
TaqI	TCGA	3 cut(s)	30, 686, 720
TasI	AATT	5 cut(s)	12, 275, 350, 480, 596
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	1 cut(s)	515
TseFI	GTSAC	2 cut(s)	238, 304
TseI	GCWGC	3 cut(s)	53, 134, 584
Tsp45I	GTSAC	2 cut(s)	238, 304
TspDTI	ATGAA	2 cut(s)	288, 764
TspRI	CASTG	1 cut(s)	515
Van91I	CCANNNNNTGG	1 cut(s)	510
XapI	RAATTY	4 cut(s)	275, 350, 480, 596
XhoI	CTCGAG	1 cut(s)	29
XspI	CTAG	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.