FvH4_7g30490

Protein SGT1 homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
22187351 .. 22191003
3653 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30490.t2

Sequence Viewer

Length: 1089 bp
ATGGCTTCCGATCTCGAGAAGCAGGCCAAGGAGGCCTTCATCGACGACCACTTCGAGCTCGCCGTTGACCTCTACACCCAGGCCATCGCCCTCGACCCCAAGAACTCAGAGCTCTACTCCGACCGCGCTCAGGCCAACATCAAATCCAACAATCTCACCGAGGCGGTTGCGGATGCGAACAAGGCGATTGAGTTGGACGCGTCTTTGTACAAGGCCTACTTGCGCAAGGGAATTGCCTGCATGAGGCTCGAGGAATATCAGACTGCAAAGGCGGCTTTGGAACTTGGGGCTTCTTTGGCACCGGAAGAATCTAGATTTGCTAAACTGATAAAAGAGTGTGATGAACTCATTGCAGAGGAAAATGGCGAGCTACCAAAGCAACCAATGGAAACAACCACTACAGAGAGTGTTACATCCGCAGAAGATATTCACCCAGTGAACCCTCCATCTGATGAGGTGACAGTAGCACCTGTCAAACCAAAGTACAGGCATGAATTCTACCAGAAGCCTGAAGAAGTGGTTGTGACTATATTTGCAAAGGGTATACCAGCCAAAGATGTTGCTGTTGACTTTGGTGAACAAATTTTAAGTGTCAGCATTGATGTTCCTGGGGAGGATACATATCATTTTCAGCCTCGCCTGTTTGGGAAGATAATTCGTGAAAAGTGCAGATTTGATGTTTTGTCTACCAAAGTTGAAATTCGCCTGGCCAAACTTGAACCTATACATTGGACATCTCTCGAGTTTAGGAAGGATAGCCTTGTTCCTGTAAAGGTTAATGCCCCAGTTATTGGAGCAGCACAAAGGCCATCTTACCCATCCTCCAAACCAAAACGAGTAGATTGGGACAAGCTCGAAGCCCAAGTGAAGAAGGAGGAAAAAGATGAGAAACTTGATGGTGATGCAGCTTTGAACAAATTTTTCCAAGAGATATACAAGGATGCTGATGAGGACACAAGAAGGGCCATGAGAAAATCTTTTGTGGAGTCCAATGGGACAGTGCTTTCGACAAACTGGAAAGAAGTGGGCACCAAGAAGGTTGAGGGAAGCGCCCCTGATGGCATGGAGATGAAGAAATGGGAGTACTAA

Protein Analysis

363

Amino Acids

40.78

Weight (kDa)

5.09

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 163 - 238 2.8e-11 CS domain
SGS PF05002 281 - 328 1e-15 SGS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 224
AccB1I GGYRCC 2 cut(s) 298, 1028
AccB7I CCANNNNNTGG 1 cut(s) 791
AccI GTMKAC 2 cut(s) 544, 686
AccII CGCG 2 cut(s) 126, 200
AciI CCGC 5 cut(s) 124, 164, 170, 272, 417
AcoI YGGCCR 1 cut(s) 708
AcsI RAATTY 4 cut(s) 494, 582, 699, 917
AcuI CTGAAG 1 cut(s) 531
AdeI CACNNNGTG 1 cut(s) 436
AfaI GTAC 3 cut(s) 209, 485, 1085
AfiI CCNNNNNNNGG 3 cut(s) 130, 243, 791
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 3 cut(s) 698, 719, 913
AjnI CCWGG 3 cut(s) 78, 607, 705
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 5 cut(s) 58, 112, 370, 853, 908
AluI AGCT 5 cut(s) 58, 112, 370, 853, 908
Alw21I GWGCWC 2 cut(s) 60, 114
Ama87I CYCGRG 3 cut(s) 14, 248, 740
AoxI GGCC 8 cut(s) 24, 33, 81, 132, 213, 708, 806, 963
ApeKI GCWGC 2 cut(s) 797, 905
ApoI RAATTY 4 cut(s) 494, 582, 699, 917
ArsI GACNNNNNNTTYG 4 cut(s) 35, 67, 988, 1020
Asp700I GAANNNNTTC 1 cut(s) 426
AspLEI GCGC 3 cut(s) 128, 225, 1052
AspS9I GGNCC 1 cut(s) 963
AsuHPI GGTGA 5 cut(s) 148, 422, 469, 587, 911
AvaI CYCGRG 3 cut(s) 14, 248, 740
BaeGI GKGCMC 1 cut(s) 1031
BalI TGGCCA 1 cut(s) 710
BanI GGYRCC 2 cut(s) 298, 1028
BanII GRGCYC 2 cut(s) 60, 114
Bbv12I GWGCWC 2 cut(s) 60, 114
BbvI GCAGC 2 cut(s) 809, 917
BccI CCATC 6 cut(s) 92, 454, 817, 826, 890, 1052
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 4 cut(s) 149, 183, 229, 263
BciT130I CCWGG 3 cut(s) 80, 609, 707
BciVI GTATCC 1 cut(s) 610
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 1053
BfuI GTATCC 1 cut(s) 610
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 3 cut(s) 273, 798, 906
BlsI GCNGC 3 cut(s) 274, 799, 907
BmcAI AGTACT 1 cut(s) 1085
Bme1390I CCNGG 3 cut(s) 80, 609, 707
BmeT110I CYCGRG 3 cut(s) 14, 248, 740
BmgT120I GGNCC 1 cut(s) 963
BmiI GGNNCC 2 cut(s) 300, 1030
BmrFI CCNGG 3 cut(s) 80, 609, 707
BmrI ACTGGG 2 cut(s) 428, 779
BmsI GCATC 3 cut(s) 163, 892, 931
BmuI ACTGGG 2 cut(s) 428, 779
BplI GAGNNNNNCTC 2 cut(s) 101, 133
Bpu10I CCTNAGC 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 621
BsaJI CCNNGG 4 cut(s) 27, 78, 159, 608
BsaWI WCCGGW 1 cut(s) 301
BsaXI ACNNNNNCTCC 2 cut(s) 806, 836
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 243, 791
Bse1I ACTGG 3 cut(s) 434, 785, 1019
Bse3DI GCAATG 1 cut(s) 348
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 3 cut(s) 80, 609, 707
BseDI CCNNGG 4 cut(s) 27, 78, 159, 608
BseGI GGATG 4 cut(s) 178, 413, 818, 946
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 3 cut(s) 130, 243, 791
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 2 cut(s) 120, 143
BseNI ACTGG 3 cut(s) 434, 785, 1019
BseSI GKGCMC 1 cut(s) 1031
BseXI GCAGC 2 cut(s) 809, 917
BsgI GTGCAG 1 cut(s) 688
Bsh1236I CGCG 2 cut(s) 126, 200
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 8 cut(s) 26, 35, 83, 134, 215, 710, 808, 965
BshNI GGYRCC 2 cut(s) 298, 1028
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 2 cut(s) 60, 114
BsiHKCI CYCGRG 3 cut(s) 14, 248, 740
BsiSI CCGG 1 cut(s) 302
BslFI GGGAC 2 cut(s) 860, 1009
BslI CCNNNNNNNGG 3 cut(s) 130, 243, 791
BsmFI GGGAC 2 cut(s) 860, 1009
BsnI GGCC 8 cut(s) 26, 35, 83, 134, 215, 710, 808, 965
BsoBI CYCGRG 3 cut(s) 14, 248, 740
Bsp1286I GDGCHC 3 cut(s) 60, 114, 1031
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 5 cut(s) 124, 164, 170, 272, 417
BspANI GGCC 8 cut(s) 26, 35, 83, 134, 215, 710, 808, 965
BspCNI CTCAG 2 cut(s) 119, 142
BspFNI CGCG 2 cut(s) 126, 200
BspLI GGNNCC 2 cut(s) 300, 1030
BspT107I GGYRCC 2 cut(s) 298, 1028
BsrDI GCAATG 1 cut(s) 348
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 3 cut(s) 434, 785, 1019
BssECI CCNNGG 4 cut(s) 27, 78, 159, 608
BssMI GATC 1 cut(s) 10
BssNAI GTATAC 1 cut(s) 545
BssT1I CCWWGG 1 cut(s) 27
Bst1107I GTATAC 1 cut(s) 545
Bst2UI CCWGG 3 cut(s) 80, 609, 707
Bst4CI ACNGT 2 cut(s) 463, 1000
BstAUI TGTACA 1 cut(s) 207
BstC8I GCNNGC 4 cut(s) 24, 60, 238, 368
BstDEI CTNAG 2 cut(s) 106, 129
BstENI CCTNNNNNAGG 1 cut(s) 241
BstF5I GGATG 4 cut(s) 178, 413, 818, 946
BstFNI CGCG 2 cut(s) 126, 200
BstH2I RGCGCY 1 cut(s) 1053
BstHHI GCGC 3 cut(s) 128, 225, 1052
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 5 cut(s) 32, 182, 272, 296, 376
BstNI CCWGG 3 cut(s) 80, 609, 707
BstSCI CCNGG 3 cut(s) 78, 607, 705
BstSFI CTRYAG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 1031
BstUI CGCG 2 cut(s) 126, 200
BstV1I GCAGC 2 cut(s) 809, 917
BstZ17I GTATAC 1 cut(s) 545
BsuI GTATCC 1 cut(s) 610
BsuRI GGCC 8 cut(s) 26, 35, 83, 134, 215, 710, 808, 965
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 4 cut(s) 178, 413, 818, 946
BtsIMutI CAGTG 2 cut(s) 441, 1005
Cac8I GCNNGC 4 cut(s) 24, 60, 238, 368
CfoI GCGC 3 cut(s) 128, 225, 1052
Cfr13I GGNCC 1 cut(s) 963
CseI GACGC 2 cut(s) 189, 206
Csp6I GTAC 3 cut(s) 208, 484, 1084
CviAII CATG 4 cut(s) 241, 491, 967, 1063
CviQI GTAC 3 cut(s) 208, 484, 1084
DdeI CTNAG 2 cut(s) 106, 129
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
DraIII CACNNNGTG 1 cut(s) 436
EaeI YGGCCR 1 cut(s) 708
Ecl136II GAGCTC 2 cut(s) 58, 112
Eco130I CCWWGG 1 cut(s) 27
Eco147I AGGCCT 2 cut(s) 35, 215
Eco24I GRGCYC 2 cut(s) 60, 114
Eco53kI GAGCTC 2 cut(s) 58, 112
Eco57I CTGAAG 1 cut(s) 531
Eco88I CYCGRG 3 cut(s) 14, 248, 740
EcoICRI GAGCTC 2 cut(s) 58, 112
EcoNI CCTNNNNNAGG 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 494
EcoRII CCWGG 3 cut(s) 78, 607, 705
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 2 cut(s) 60, 114
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 4 cut(s) 244, 494, 970, 1066
FaiI YATR 9 cut(s) 242, 492, 530, 545, 622, 725, 934, 968, 1064
FalI AAGNNNNNCTT 6 cut(s) 20, 52, 203, 235, 796, 828
FaqI GGGAC 2 cut(s) 860, 1009
FatI CATG 4 cut(s) 240, 490, 966, 1062
FblI GTMKAC 2 cut(s) 544, 686
Fnu4HI GCNGC 3 cut(s) 273, 798, 906
FokI GGATG 4 cut(s) 185, 400, 805, 953
FriOI GRGCYC 2 cut(s) 60, 114
Fsp4HI GCNGC 3 cut(s) 273, 798, 906
FspBI CTAG 1 cut(s) 312
FspI TGCGCA 1 cut(s) 224
GlaI GCGC 3 cut(s) 127, 224, 1051
GluI GCNGC 3 cut(s) 273, 798, 906
HaeII RGCGCY 1 cut(s) 1053
HaeIII GGCC 8 cut(s) 26, 35, 83, 134, 215, 710, 808, 965
HapII CCGG 1 cut(s) 302
HgaI GACGC 2 cut(s) 189, 206
HhaI GCGC 3 cut(s) 128, 225, 1052
Hin1II CATG 4 cut(s) 244, 494, 970, 1066
Hin6I GCGC 3 cut(s) 126, 223, 1050
HinP1I GCGC 3 cut(s) 126, 223, 1050
HincII GTYRAC 2 cut(s) 67, 568
HindII GTYRAC 2 cut(s) 67, 568
HinfI GANTC 2 cut(s) 308, 986
HpaII CCGG 1 cut(s) 302
HphI GGTGA 5 cut(s) 148, 422, 469, 587, 911
Hpy166II GTNNAC 6 cut(s) 67, 439, 545, 568, 578, 687
Hpy188I TCNGA 5 cut(s) 10, 109, 121, 261, 451
Hpy188III TCNNGA 5 cut(s) 14, 16, 312, 659, 740
Hpy8I GTNNAC 6 cut(s) 67, 439, 545, 568, 578, 687
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 5 cut(s) 46, 745, 865, 954, 1030
HpyCH4III ACNGT 2 cut(s) 463, 1000
HpyCH4V TGCA 6 cut(s) 240, 266, 353, 536, 669, 905
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 182, 272, 296, 376
HpyF3I CTNAG 2 cut(s) 106, 129
Hsp92II CATG 4 cut(s) 244, 494, 970, 1066
HspAI GCGC 3 cut(s) 126, 223, 1050
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 794
Lsp1109I GCAGC 2 cut(s) 809, 917
LweI GCATC 3 cut(s) 163, 892, 931
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 3 cut(s) 409, 457, 523
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 6 cut(s) 317, 434, 524, 661, 880, 1084
MhlI GDGCHC 3 cut(s) 60, 114, 1031
MlsI TGGCCA 1 cut(s) 710
MluCI AATT 6 cut(s) 231, 494, 582, 654, 699, 917
MluI ACGCGT 1 cut(s) 198
MluNI TGGCCA 1 cut(s) 710
MlyI GAGTC 1 cut(s) 995
MmeI TCCRAC 3 cut(s) 144, 171, 174
Mox20I TGGCCA 1 cut(s) 710
MroXI GAANNNNTTC 1 cut(s) 426
MscI TGGCCA 1 cut(s) 710
MseI TTAA 2 cut(s) 587, 777
MslI CAYNNNNRTG 1 cut(s) 1067
Msp20I TGGCCA 1 cut(s) 710
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 3 cut(s) 80, 609, 707
MvaI CCWGG 3 cut(s) 80, 609, 707
MvnI CGCG 2 cut(s) 126, 200
MwoI GCNNNNNNNGC 5 cut(s) 32, 182, 272, 296, 376
NdeII GATC 1 cut(s) 10
NlaIII CATG 4 cut(s) 244, 494, 970, 1066
NlaIV GGNNCC 2 cut(s) 300, 1030
NmuCI GTSAC 2 cut(s) 457, 523
NsbI TGCGCA 1 cut(s) 224
PaeR7I CTCGAG 3 cut(s) 14, 248, 740
PceI AGGCCT 2 cut(s) 35, 215
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 60
PdmI GAANNNNTTC 1 cut(s) 426
PfeI GAWTC 1 cut(s) 308
PflMI CCANNNNNTGG 1 cut(s) 791
PkrI GCNGC 3 cut(s) 274, 799, 907
PleI GAGTC 1 cut(s) 994
PpsI GAGTC 1 cut(s) 994
Psp124BI GAGCTC 2 cut(s) 60, 114
Psp6I CCWGG 3 cut(s) 78, 607, 705
PspGI CCWGG 3 cut(s) 78, 607, 705
PspN4I GGNNCC 2 cut(s) 300, 1030
PspPI GGNCC 1 cut(s) 963
PspXI VCTCGAGB 1 cut(s) 248
RsaI GTAC 3 cut(s) 209, 485, 1085
RsaNI GTAC 3 cut(s) 208, 484, 1084
RseI CAYNNNNRTG 1 cut(s) 1067
SacI GAGCTC 2 cut(s) 60, 114
SaqAI TTAA 2 cut(s) 587, 777
SatI GCNGC 3 cut(s) 273, 798, 906
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 963
ScaI AGTACT 1 cut(s) 1085
SchI GAGTC 1 cut(s) 995
ScrFI CCNGG 3 cut(s) 80, 609, 707
SduI GDGCHC 3 cut(s) 60, 114, 1031
SfaNI GCATC 3 cut(s) 163, 892, 931
SfcI CTRYAG 1 cut(s) 399
SfiI GGCCNNNNNGGCC 1 cut(s) 32
Sfr274I CTCGAG 3 cut(s) 14, 248, 740
SlaI CTCGAG 3 cut(s) 14, 248, 740
SmiMI CAYNNNNRTG 1 cut(s) 1067
SmlI CTYRAG 3 cut(s) 14, 248, 740
SmoI CTYRAG 3 cut(s) 14, 248, 740
Sse9I AATT 6 cut(s) 231, 494, 582, 654, 699, 917
SseBI AGGCCT 2 cut(s) 35, 215
SsiI CCGC 5 cut(s) 124, 164, 170, 272, 417
SspMI CTAG 1 cut(s) 312
SstI GAGCTC 2 cut(s) 60, 114
StuI AGGCCT 2 cut(s) 35, 215
StyD4I CCNGG 3 cut(s) 78, 607, 705
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 2 cut(s) 463, 1000
TaqI TCGA 8 cut(s) 15, 42, 54, 93, 249, 741, 855, 1007
TasI AATT 6 cut(s) 231, 494, 582, 654, 699, 917
TatI WGTACW 3 cut(s) 207, 483, 1083
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 2 cut(s) 587, 777
Tru9I TTAA 2 cut(s) 587, 777
TscAI CASTG 2 cut(s) 441, 1005
TseFI GTSAC 2 cut(s) 457, 523
TseI GCWGC 2 cut(s) 797, 905
Tsp45I GTSAC 2 cut(s) 457, 523
TspDTI ATGAA 4 cut(s) 28, 357, 507, 1085
TspRI CASTG 2 cut(s) 441, 1005
Van91I CCANNNNNTGG 1 cut(s) 791
XagI CCTNNNNNAGG 1 cut(s) 241
XapI RAATTY 4 cut(s) 494, 582, 699, 917
XbaI TCTAGA 1 cut(s) 311
XhoI CTCGAG 3 cut(s) 14, 248, 740
XmiI GTMKAC 2 cut(s) 544, 686
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 1 cut(s) 312
ZrmI AGTACT 1 cut(s) 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.