FvH4_1g20313
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000440
Physical Location & Seq
Forward (+)
12558841 .. 12559752
912 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20313.t1

Sequence Viewer

Length: 435 bp
ATGCTTCGATGTCTGGCTGGTGATAAGCCTAAGGAATGGGACTTGGTGTTACCCCACGTTGAGTTTGCCTTCAACAGATCGAAAAATCGAACCACAAAGTGCAGTCCTTTCCAAGTAGTGTATGGGCAGAATTCAAATAATGTTCTATATTTGACGCCTCTTCCAAACCCAAGCAAGGTGAGCAGGAAGGCAGAAGAAATGGCTGATTACATCAAATCCATCCATAAAGAAGTGAGGAAAAGGATTGAAGAGACCAACCTAAAGTACAAGGTTGCAGCTGATCAACACAGAAGAAGGGTTGTGTCTGAAGAAGGTGACGAGGTCTGGGCAGTTTTGACAAAGGACAGGTTTCCTACCGAAGCCTACAATAAGCTTAAAGACCGTAAAGTTGGTCCATGCAAAATTCTCAAGAAGATAAACGATAATCAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.8

Weight (kDa)

9.6

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 105 - 142 9.8e-07 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 130, 402
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 155
AdeI CACNNNGTG 1 cut(s) 99
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 3 cut(s) 73, 135, 248
AluBI AGCT 2 cut(s) 278, 373
AluI AGCT 2 cut(s) 278, 373
Alw26I GTCTC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 2 cut(s) 130, 402
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 3 cut(s) 32, 190, 326
AvaII GGWCC 1 cut(s) 392
AxyI CCTNAGG 1 cut(s) 30
BbvI GCAGC 1 cut(s) 287
BccI CCATC 1 cut(s) 227
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 245
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 392
BsaHI GRCGYC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse21I CCTNAGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 121
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 53
Bso31I GGTCTC 1 cut(s) 245
Bsp143I GATC 2 cut(s) 77, 280
BspTNI GGTCTC 1 cut(s) 245
BssMI GATC 2 cut(s) 77, 280
BssNI GRCGYC 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 383
Bst6I CTCTTC 2 cut(s) 165, 243
BstACI GRCGYC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 219
BstKTI GATC 2 cut(s) 80, 283
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 2 cut(s) 77, 280
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 287
Bsu36I CCTNAGG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 392
CseI GACGC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 265
CviAII CATG 1 cut(s) 396
CviJI RGCY 6 cut(s) 17, 28, 203, 278, 362, 373
CviKI_1 RGCY 6 cut(s) 17, 28, 203, 278, 362, 373
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 1 cut(s) 30
DpnI GATC 2 cut(s) 79, 282
DpnII GATC 2 cut(s) 77, 280
DraIII CACNNNGTG 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 165, 243
EarI CTCTTC 2 cut(s) 165, 243
Eco31I GGTCTC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 130
FaeI CATG 1 cut(s) 399
FaiI YATR 5 cut(s) 123, 148, 225, 397, 433
FaqI GGGAC 1 cut(s) 53
FatI CATG 1 cut(s) 395
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 276
HgaI GACGC 1 cut(s) 163
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 1 cut(s) 399
HindIII AAGCTT 1 cut(s) 371
HphI GGTGA 3 cut(s) 32, 190, 326
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 1 cut(s) 409
HpyAV CCTTC 4 cut(s) 79, 181, 288, 305
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 102, 275, 399
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 1 cut(s) 399
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 2 cut(s) 77, 280
LpnPI CCDG 4 cut(s) 3, 169, 310, 331
Lsp1109I GCAGC 1 cut(s) 287
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 48, 314
MalI GATC 2 cut(s) 79, 282
MboI GATC 2 cut(s) 77, 280
MboII GAAGA 6 cut(s) 152, 206, 260, 303, 320, 424
MluCI AATT 2 cut(s) 130, 402
MnlI CCTC 3 cut(s) 168, 228, 313
MseI TTAA 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeII GATC 2 cut(s) 77, 280
NlaIII CATG 1 cut(s) 399
NmuCI GTSAC 1 cut(s) 314
PflFI GACNNNGTC 1 cut(s) 320
PkrI GCNGC 1 cut(s) 277
PspPI GGNCC 1 cut(s) 392
PsyI GACNNNGTC 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 2 cut(s) 77, 280
Sau96I GGNCC 1 cut(s) 392
SetI ASST 9 cut(s) 60, 180, 261, 273, 280, 316, 324, 350, 375
SinI GGWCC 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 2 cut(s) 130, 402
TaaI ACNGT 1 cut(s) 383
TaiI ACGT 1 cut(s) 60
TaqI TCGA 3 cut(s) 7, 80, 88
TasI AATT 2 cut(s) 130, 402
TatI WGTACW 1 cut(s) 264
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 314
Tth111I GACNNNGTC 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 392
XapI RAATTY 2 cut(s) 130, 402
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.