Prupe.8G072900_v2.0.a1

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000440
Physical Location & Seq
Forward (+)
10640308 .. 10644372
4065 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G072900.1

Sequence Viewer

Length: 1503 bp
ATGGGCTTTGTGGGTCTCGTTCAATTTTCCCTTCAATGCTTTGATGTTCTTGCATGGCCTCTACTTTCTCTAGTGTATCCTCTATGTTGTTCCATTAGGGCGATTGAGGCCAATTCTGTTTCAGATTCTCAGAAGTTGAATACTTATTGGGTTGTCTTCTCATTGATTCTGCTATTTGAACATGCATTTATGAAGCTCCTAAAATGGCTCCCACTGTGGCCATACTTTAGGCTAATCATTGTCTTCTGGTTGGTGATACCTCATTTCGGTGGTGCATTTTATGTCTATAAACACCTTATCTGTCCATGCCTCTCCACGGACCTCAAAATTGTTGTCAACTGGTTCAACAAGCAAAAGAAATCCTCGTTTAACAGCGACAATGTTTTTACCGAGGTGGAGAGATATGCACAGGAGAAAGGACCTGAGGCTCTAGAAAAAGTTGCTGCTTCCAAATCTGAGAGAACAAAGTCAAATCCCGATGCGAAAGAGTTCAAAGCAGTTTCATCTCTGGAGAACAGAGAGGTTAGTCAGGCAGAGCCTAATCTCACTGGAACTGAAAACAGCAGATTTCCCAGTACGGATATTAAAGAAAAGGCCATTGGGATTGCATCAGAAGGAGGAATTTTGAACATTCCACCTTCAGAGAAGGTTCAGGAGTGGACAAGTGCAGTCAGTCAGGTAACGACCCAAAGTGATACAACTTTTAACTCCTACCCGGACGGTAAAATACACGAGGCTGTATATGAGAAACTGAAAATAGAGAACAAAGCTGAAGCTAAGCTCACTCAGATGAAAAATGGTACATTTGCGACCATGGAGACTCAAGAAAAAGTTGTTGAGGTTGTTACAAGTAGAGAAGTTATTGAGTCTGCCCTACAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAGCTAACAACTCAAAGTGAAGCAACTTTGAACTCCCACCTCCAAGGCAGAAAACACAAGGCAGCATGTGTGGCACTGAAAGCAAAGAGCCAGCCATTTGCGCCAAAAATTGCCCCGGCTTCAACTGCAAAGGAATCTAATCAACCTAACAAAGAGCGAGGAAACAGGACGACGAGCAGTGCATCAAAACAAAAAGTTATTGTAGATGAAAAGGTGCAAAGCCAGAAAAATAGCATTCCAACTTCAAGGACAAAGACTTCTGATAAATCTAGAAAGGAGCCAGCAGAAGGTGCATCCATCAATGGAGGCCAACAACGAAATCGGAATGAGGTTCCAAGCAAGAAGGATTATCGTATTTGGTGCAAAATTTGTAATGTGCACTGCCCTGGTGAGATTGACTTGGCATCTCATATCAGTGGAAGGAAGCATGAGGAAAATGTGCTACAACAACAACAGAAGGCAAATAGTGTTCCAAGAATGAATGGTCCCCCTCTGTGGTGCAAGATTTGTAATGTGGGCTGCTATACTGAGTTGGACATGGTATCTCATCGTAATGGAAGGAGGCACTTGGATCTTGAATCGACTGGAATGTAG

Protein Analysis

501

Amino Acids

56.12

Weight (kDa)

8.94

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 1488
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 2 cut(s) 621, 1275
AcuI CTGAAG 2 cut(s) 624, 792
AfaI GTAC 2 cut(s) 577, 802
AfiI CCNNNNNNNGG 4 cut(s) 266, 316, 1196, 1404
AjnI CCWGG 1 cut(s) 1294
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
AluBI AGCT 5 cut(s) 196, 770, 776, 781, 913
AluI AGCT 5 cut(s) 196, 770, 776, 781, 913
Alw21I GWGCWC 2 cut(s) 904, 1290
Alw26I GTCTC 2 cut(s) 20, 812
Alw44I GTGCAC 1 cut(s) 1286
AlwI GGATC 1 cut(s) 1488
AoxI GGCC 5 cut(s) 56, 108, 218, 594, 1216
ApaLI GTGCAC 1 cut(s) 1286
ApeKI GCWGC 3 cut(s) 443, 971, 1428
ApoI RAATTY 2 cut(s) 621, 1275
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
Asp700I GAANNNNTTC 1 cut(s) 488
AspLEI GCGC 1 cut(s) 1012
AspS9I GGNCC 3 cut(s) 319, 419, 1394
AsuC2I CCSGG 2 cut(s) 716, 1025
AsuHPI GGTGA 2 cut(s) 265, 1310
AvaII GGWCC 3 cut(s) 319, 419, 1394
AxyI CCTNAGG 1 cut(s) 423
BaeGI GKGCMC 1 cut(s) 1290
BalI TGGCCA 1 cut(s) 220
BauI CACGAG 1 cut(s) 731
BbsI GAAGAC 2 cut(s) 148, 235
Bbv12I GWGCWC 2 cut(s) 904, 1290
BbvI GCAGC 3 cut(s) 430, 983, 1415
BccI CCATC 1 cut(s) 1214
BciT130I CCWGG 1 cut(s) 1296
BciVI GTATCC 1 cut(s) 87
BcnI CCSGG 2 cut(s) 716, 1025
BcoDI GTCTC 2 cut(s) 20, 812
BfaI CTAG 3 cut(s) 71, 431, 1179
BfuI GTATCC 1 cut(s) 87
BisI GCNGC 3 cut(s) 444, 972, 1429
BlpI GCTNAGC 1 cut(s) 777
BlsI GCNGC 3 cut(s) 445, 973, 1430
Bme1390I CCNGG 3 cut(s) 716, 1025, 1296
Bme18I GGWCC 3 cut(s) 319, 419, 1394
BmgT120I GGNCC 3 cut(s) 319, 419, 1394
BmiI GGNNCC 4 cut(s) 209, 1188, 1242, 1396
BmrFI CCNGG 3 cut(s) 716, 1025, 1296
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 5 cut(s) 469, 617, 1100, 1211, 1322
BmuI ACTGGG 1 cut(s) 567
BpiI GAAGAC 2 cut(s) 148, 235
BpmI CTGGAG 1 cut(s) 530
Bpu1102I GCTNAGC 1 cut(s) 777
BpuEI CTTGAG 1 cut(s) 807
BpuMI CCSGG 2 cut(s) 716, 1025
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 6 cut(s) 315, 390, 813, 952, 1023, 1294
Bsc4I CCNNNNNNNGG 4 cut(s) 266, 316, 1196, 1404
Bse1I ACTGG 4 cut(s) 344, 553, 573, 1498
Bse21I CCTNAGG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 1296
BseDI CCNNGG 6 cut(s) 315, 390, 813, 952, 1023, 1294
BseGI GGATG 1 cut(s) 1202
BseLI CCNNNNNNNGG 4 cut(s) 266, 316, 1196, 1404
BseMII CTCAG 5 cut(s) 143, 414, 447, 800, 1428
BseNI ACTGG 4 cut(s) 344, 553, 573, 1498
BseSI GKGCMC 1 cut(s) 1290
BseXI GCAGC 3 cut(s) 430, 983, 1415
BsgI GTGCAG 1 cut(s) 687
BshFI GGCC 5 cut(s) 58, 110, 220, 596, 1218
BsiHKAI GWGCWC 2 cut(s) 904, 1290
BsiSI CCGG 2 cut(s) 716, 1025
BslFI GGGAC 1 cut(s) 1380
BslI CCNNNNNNNGG 4 cut(s) 266, 316, 1196, 1404
BsmAI GTCTC 2 cut(s) 20, 812
BsmFI GGGAC 1 cut(s) 1380
BsmI GAATGC 1 cut(s) 1143
BsnI GGCC 5 cut(s) 58, 110, 220, 596, 1218
Bso31I GGTCTC 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 904, 1290
Bsp143I GATC 1 cut(s) 1480
Bsp1720I GCTNAGC 1 cut(s) 777
Bsp19I CCATGG 1 cut(s) 813
BspANI GGCC 5 cut(s) 58, 110, 220, 596, 1218
BspCNI CTCAG 5 cut(s) 142, 415, 448, 799, 1429
BspLI GGNNCC 4 cut(s) 209, 1188, 1242, 1396
BspPI GGATC 1 cut(s) 1488
BspTNI GGTCTC 1 cut(s) 20
BsrI ACTGG 4 cut(s) 344, 553, 573, 1498
BssECI CCNNGG 6 cut(s) 315, 390, 813, 952, 1023, 1294
BssMI GATC 1 cut(s) 1480
BssSI CACGAG 1 cut(s) 731
BssT1I CCWWGG 2 cut(s) 813, 952
Bst2BI CACGAG 1 cut(s) 731
Bst2UI CCWGG 1 cut(s) 1296
Bst4CI ACNGT 2 cut(s) 216, 722
BstAPI GCANNNNNTGC 1 cut(s) 1199
BstC8I GCNNGC 2 cut(s) 1001, 1191
BstDEI CTNAG 6 cut(s) 129, 423, 456, 777, 786, 1437
BstDSI CCRYGG 2 cut(s) 315, 813
BstF5I GGATG 1 cut(s) 1202
BstHHI GCGC 1 cut(s) 1012
BstKTI GATC 1 cut(s) 1483
BstMAI GTCTC 2 cut(s) 20, 812
BstMBI GATC 1 cut(s) 1480
BstMWI GCNNNNNNNGC 6 cut(s) 107, 980, 989, 1009, 1034, 1199
BstNI CCWGG 1 cut(s) 1296
BstNSI RCATGY 2 cut(s) 185, 978
BstSCI CCNGG 3 cut(s) 714, 1023, 1294
BstSLI GKGCMC 1 cut(s) 1290
BstV1I GCAGC 3 cut(s) 430, 983, 1415
BstV2I GAAGAC 2 cut(s) 148, 235
BstX2I RGATCY 1 cut(s) 1480
BstYI RGATCY 1 cut(s) 1480
Bsu36I CCTNAGG 1 cut(s) 423
BsuI GTATCC 1 cut(s) 87
BsuRI GGCC 5 cut(s) 58, 110, 220, 596, 1218
BtgI CCRYGG 2 cut(s) 315, 813
BtsCI GGATG 1 cut(s) 1202
BtsI GCAGTG 2 cut(s) 1093, 1288
BtsIMutI CAGTG 6 cut(s) 212, 546, 983, 1093, 1288, 1330
Cac8I GCNNGC 2 cut(s) 1001, 1191
CfoI GCGC 1 cut(s) 1012
Cfr13I GGNCC 3 cut(s) 319, 419, 1394
Csp6I GTAC 2 cut(s) 576, 801
CviAII CATG 7 cut(s) 54, 182, 306, 814, 975, 1337, 1447
CviQI GTAC 2 cut(s) 576, 801
DdeI CTNAG 6 cut(s) 129, 423, 456, 777, 786, 1437
DpnI GATC 1 cut(s) 1482
DpnII GATC 1 cut(s) 1480
EaeI YGGCCR 1 cut(s) 218
Eco130I CCWWGG 2 cut(s) 813, 952
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 3 cut(s) 319, 419, 1394
Eco57I CTGAAG 2 cut(s) 624, 792
Eco81I CCTNAGG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 1294
EcoT14I CCWWGG 2 cut(s) 813, 952
EcoT22I ATGCAT 1 cut(s) 187
ErhI CCWWGG 2 cut(s) 813, 952
FaeI CATG 7 cut(s) 57, 185, 309, 817, 978, 1340, 1450
FaqI GGGAC 1 cut(s) 1380
FatI CATG 7 cut(s) 53, 181, 305, 813, 974, 1336, 1446
Fnu4HI GCNGC 3 cut(s) 444, 972, 1429
FokI GGATG 1 cut(s) 1189
Fsp4HI GCNGC 3 cut(s) 444, 972, 1429
FspBI CTAG 3 cut(s) 71, 431, 1179
GlaI GCGC 1 cut(s) 1011
GluI GCNGC 3 cut(s) 444, 972, 1429
GsuI CTGGAG 1 cut(s) 530
HaeIII GGCC 5 cut(s) 58, 110, 220, 596, 1218
HapII CCGG 2 cut(s) 716, 1025
HhaI GCGC 1 cut(s) 1012
Hin1II CATG 7 cut(s) 57, 185, 309, 817, 978, 1340, 1450
Hin6I GCGC 1 cut(s) 1010
HinP1I GCGC 1 cut(s) 1010
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 6 cut(s) 125, 166, 820, 866, 1043, 1487
HpaII CCGG 2 cut(s) 716, 1025
HphI GGTGA 2 cut(s) 265, 1310
Hpy166II GTNNAC 4 cut(s) 337, 660, 894, 1288
Hpy188I TCNGA 8 cut(s) 124, 132, 457, 613, 643, 789, 1171, 1233
Hpy188III TCNNGA 8 cut(s) 431, 476, 509, 653, 824, 883, 1179, 1484
Hpy8I GTNNAC 4 cut(s) 337, 660, 894, 1288
Hpy99I CGWCG 1 cut(s) 1084
HpyAV CCTTC 9 cut(s) 41, 608, 640, 648, 1190, 1246, 1323, 1360, 1461
HpyCH4III ACNGT 2 cut(s) 216, 722
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 980, 989, 1009, 1034, 1199
HpyF3I CTNAG 6 cut(s) 129, 423, 456, 777, 786, 1437
Hsp92II CATG 7 cut(s) 57, 185, 309, 817, 978, 1340, 1450
HspAI GCGC 1 cut(s) 1010
Kzo9I GATC 1 cut(s) 1480
LmnI GCTCC 3 cut(s) 201, 213, 1186
Lsp1109I GCAGC 3 cut(s) 430, 983, 1415
LweI GCATC 5 cut(s) 469, 617, 1100, 1211, 1322
MaeI CTAG 3 cut(s) 71, 431, 1179
MaeIII GTNAC 2 cut(s) 679, 844
MalI GATC 1 cut(s) 1482
MboI GATC 1 cut(s) 1480
MboII GAAGA 2 cut(s) 148, 235
MflI RGATCY 1 cut(s) 1480
MhlI GDGCHC 2 cut(s) 904, 1290
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 6 cut(s) 23, 112, 327, 621, 1017, 1275
MluNI TGGCCA 1 cut(s) 220
MlyI GAGTC 2 cut(s) 814, 875
MmeI TCCRAC 2 cut(s) 1172, 1422
Mox20I TGGCCA 1 cut(s) 220
Mph1103I ATGCAT 1 cut(s) 187
MroXI GAANNNNTTC 1 cut(s) 488
MscI TGGCCA 1 cut(s) 220
MseI TTAA 3 cut(s) 369, 585, 705
MslI CAYNNNNRTG 4 cut(s) 267, 788, 1323, 1461
Msp20I TGGCCA 1 cut(s) 220
MspI CCGG 2 cut(s) 716, 1025
MspR9I CCNGG 3 cut(s) 716, 1025, 1296
Mva1269I GAATGC 1 cut(s) 1143
MvaI CCWGG 1 cut(s) 1296
MwoI GCNNNNNNNGC 6 cut(s) 107, 980, 989, 1009, 1034, 1199
NciI CCSGG 2 cut(s) 716, 1025
NcoI CCATGG 1 cut(s) 813
NdeII GATC 1 cut(s) 1480
NlaIII CATG 7 cut(s) 57, 185, 309, 817, 978, 1340, 1450
NlaIV GGNNCC 4 cut(s) 209, 1188, 1242, 1396
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 2 cut(s) 185, 978
PctI GAATGC 1 cut(s) 1143
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 4 cut(s) 125, 166, 1043, 1487
PkrI GCNGC 3 cut(s) 445, 973, 1430
PleI GAGTC 2 cut(s) 814, 874
PpsI GAGTC 2 cut(s) 814, 874
PpuMI RGGWCCY 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 1294
PspGI CCWGG 1 cut(s) 1294
PspN4I GGNNCC 4 cut(s) 209, 1188, 1242, 1396
PspPI GGNCC 3 cut(s) 319, 419, 1394
PspPPI RGGWCCY 1 cut(s) 419
PsuI RGATCY 1 cut(s) 1480
RsaI GTAC 2 cut(s) 577, 802
RsaNI GTAC 2 cut(s) 576, 801
RseI CAYNNNNRTG 4 cut(s) 267, 788, 1323, 1461
SaqAI TTAA 3 cut(s) 369, 585, 705
SatI GCNGC 3 cut(s) 444, 972, 1429
Sau3AI GATC 1 cut(s) 1480
Sau96I GGNCC 3 cut(s) 319, 419, 1394
SchI GAGTC 2 cut(s) 814, 875
ScrFI CCNGG 3 cut(s) 716, 1025, 1296
SduI GDGCHC 2 cut(s) 904, 1290
SfaNI GCATC 5 cut(s) 469, 617, 1100, 1211, 1322
SinI GGWCC 3 cut(s) 319, 419, 1394
SmiMI CAYNNNNRTG 4 cut(s) 267, 788, 1323, 1461
SmlI CTYRAG 1 cut(s) 822
SmoI CTYRAG 1 cut(s) 822
Sse9I AATT 6 cut(s) 23, 112, 327, 621, 1017, 1275
SspMI CTAG 3 cut(s) 71, 431, 1179
StyD4I CCNGG 3 cut(s) 714, 1023, 1294
StyI CCWWGG 2 cut(s) 813, 952
TaaI ACNGT 2 cut(s) 216, 722
TaqI TCGA 1 cut(s) 1490
TasI AATT 6 cut(s) 23, 112, 327, 621, 1017, 1275
TfiI GAWTC 4 cut(s) 125, 166, 1043, 1487
Tru1I TTAA 3 cut(s) 369, 585, 705
Tru9I TTAA 3 cut(s) 369, 585, 705
TscAI CASTG 6 cut(s) 219, 553, 990, 1093, 1295, 1330
TseI GCWGC 3 cut(s) 443, 971, 1428
TspDTI ATGAA 5 cut(s) 206, 492, 806, 1131, 1403
TspGWI ACGGA 2 cut(s) 332, 593
TspRI CASTG 6 cut(s) 219, 553, 990, 1093, 1295, 1330
VneI GTGCAC 1 cut(s) 1286
VpaK11BI GGWCC 3 cut(s) 319, 419, 1394
XapI RAATTY 2 cut(s) 621, 1275
XbaI TCTAGA 2 cut(s) 430, 1178
XceI RCATGY 2 cut(s) 185, 978
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 3 cut(s) 71, 431, 1179
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.