Rorug06G0052500

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000440
Physical Location & Seq
Reverse (-)
7354024 .. 7357244
3221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0052500.1

Sequence Viewer

Length: 522 bp
ATGCGTCGTGGCAATGGGACGGGATTGGAGTGGGCACGAGTCCTTGCAGGGGCGGAGGCGACGTCTGGTGGTGGTGGTCTGCGGCCGGCCGGCTTGCACTTGGTTGTTTGGGAAATGGCTGAGAGAGAACAGCAGCACCAAAGTGATGCACAGATGCAATCTCCAAAGGATGAGATGGTGGCATGTGTGATGGCATTGGAGGCTGCTTTGCTTCCATGCTTGCCTGCCAGAGAGCTTCAAGCAATAGACCGTTCGCCGCACCCGTCTCATCAGATTGATGTTGAGAGACATGCCAGAGATTTTATGGAAGCTGCCAAAAAGCTTCAGCTCCATTTTATTGGTCTGCAACGTGAGGATCTGCTCACGAATGCTGAAAAACTCAGAAAGGAGATTGCTGTGATGGAAGAGGAGTTGAAGGTAAAGAATGAGATTATCAAGAAGAATGAAAGGTTAATCCAAGGGTGGAAAAAGGAGCTGAAAGACCAATTGGACAGACACAATACTGAGCTCGAGAAAGTGTAG

Protein Analysis

173

Amino Acids

19.65

Weight (kDa)

6.18

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med28 PF11594 62 - 159 2.1e-22 Mediator complex subunit 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 65
AciI CCGC 3 cut(s) 53, 82, 257
AclWI GGATC 1 cut(s) 363
AcoI YGGCCR 2 cut(s) 83, 87
AcuI CTGAAG 1 cut(s) 308
AcyI GRCGYC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 2 cut(s) 239, 415
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AleI CACNNNNGTG 1 cut(s) 141
AluBI AGCT 6 cut(s) 235, 311, 322, 328, 475, 508
AluI AGCT 6 cut(s) 235, 311, 322, 328, 475, 508
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 2 cut(s) 270, 280
AlwI GGATC 1 cut(s) 363
Ama87I CYCGRG 1 cut(s) 509
AoxI GGCC 2 cut(s) 83, 87
ApeKI GCWGC 3 cut(s) 133, 203, 311
AvaI CYCGRG 1 cut(s) 509
BaeGI GKGCMC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 510
BauI CACGAG 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 3 cut(s) 145, 190, 298
BccI CCATC 3 cut(s) 169, 184, 394
BcoDI GTCTC 2 cut(s) 270, 280
BisI GCNGC 5 cut(s) 83, 134, 204, 257, 312
BlsI GCNGC 5 cut(s) 84, 135, 205, 258, 313
BmeT110I CYCGRG 1 cut(s) 509
BmsI GCATC 2 cut(s) 136, 144
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 457
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse118I RCCGGY 2 cut(s) 85, 89
Bse3DI GCAATG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 3 cut(s) 111, 394, 495
BseRI GAGGAG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 37
BseX3I CGGCCG 2 cut(s) 83, 87
BseXI GCAGC 3 cut(s) 145, 190, 298
Bsh1285I CGRYCG 2 cut(s) 86, 90
BshFI GGCC 2 cut(s) 85, 89
BsiEI CGRYCG 2 cut(s) 86, 90
BsiHKAI GWGCWC 1 cut(s) 510
BsiHKCI CYCGRG 1 cut(s) 509
BsiSI CCGG 2 cut(s) 86, 90
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 2 cut(s) 270, 280
BsmBI CGTCTC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 31
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 2 cut(s) 85, 89
BsoBI CYCGRG 1 cut(s) 509
Bsp1286I GDGCHC 2 cut(s) 37, 510
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 3 cut(s) 53, 82, 257
BspANI GGCC 2 cut(s) 85, 89
BspCNI CTCAG 3 cut(s) 112, 393, 496
BspPI GGATC 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 19
BsrFI RCCGGY 2 cut(s) 85, 89
BssAI RCCGGY 2 cut(s) 85, 89
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 1 cut(s) 355
BssNI GRCGYC 1 cut(s) 62
BssSI CACGAG 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 457
Bst2BI CACGAG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 399
BstACI GRCGYC 1 cut(s) 62
BstC8I GCNNGC 5 cut(s) 87, 91, 95, 221, 225
BstDEI CTNAG 3 cut(s) 120, 380, 504
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 2 cut(s) 270, 280
BstMBI GATC 1 cut(s) 355
BstMCI CGRYCG 2 cut(s) 86, 90
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNSI RCATGY 2 cut(s) 186, 293
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 3 cut(s) 145, 190, 298
BstX2I RGATCY 1 cut(s) 355
BstXI CCANNNNNNTGG 1 cut(s) 338
BstYI RGATCY 1 cut(s) 355
BstZI CGGCCG 2 cut(s) 83, 87
BsuRI GGCC 2 cut(s) 85, 89
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 5 cut(s) 87, 91, 95, 221, 225
Cfr10I RCCGGY 2 cut(s) 85, 89
CviAII CATG 3 cut(s) 183, 216, 290
DdeI CTNAG 3 cut(s) 120, 380, 504
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
EaeI YGGCCR 2 cut(s) 83, 87
EagI CGGCCG 2 cut(s) 83, 87
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
EciI GGCGGA 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 508
EclXI CGGCCG 2 cut(s) 83, 87
Eco130I CCWWGG 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 510
Eco52I CGGCCG 2 cut(s) 83, 87
Eco53kI GAGCTC 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 509
EcoICRI GAGCTC 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 457
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 3 cut(s) 186, 219, 293
FaiI YATR 4 cut(s) 184, 217, 291, 305
FaqI GGGAC 1 cut(s) 31
FatI CATG 3 cut(s) 182, 215, 289
Fnu4HI GCNGC 5 cut(s) 83, 134, 204, 257, 312
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 510
FseI GGCCGGCC 1 cut(s) 89
Fsp4HI GCNGC 5 cut(s) 83, 134, 204, 257, 312
GluI GCNGC 5 cut(s) 83, 134, 204, 257, 312
HaeIII GGCC 2 cut(s) 85, 89
HapII CCGG 2 cut(s) 86, 90
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 3 cut(s) 186, 219, 293
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 1 cut(s) 39
HpaII CCGG 2 cut(s) 86, 90
Hpy188I TCNGA 2 cut(s) 273, 383
Hpy188III TCNNGA 3 cut(s) 364, 436, 511
Hpy99I CGWCG 2 cut(s) 9, 64
HpyAV CCTTC 1 cut(s) 409
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 2 cut(s) 62, 349
HpyCH4V TGCA 5 cut(s) 47, 97, 149, 157, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 3 cut(s) 120, 380, 504
HpySE526I ACGT 2 cut(s) 62, 349
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 3 cut(s) 186, 219, 293
KroI GCCGGC 2 cut(s) 85, 89
KroNI GCCGGC 2 cut(s) 87, 91
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 2 cut(s) 333, 472
LpnPI CCDG 7 cut(s) 33, 51, 99, 103, 237, 241, 307
Lsp1109I GCAGC 3 cut(s) 145, 190, 298
LweI GCATC 2 cut(s) 136, 144
MaeII ACGT 2 cut(s) 62, 349
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 2 cut(s) 416, 451
MfeI CAATTG 1 cut(s) 485
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 2 cut(s) 37, 510
MluCI AATT 1 cut(s) 485
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 4 cut(s) 49, 193, 346, 400
MroNI GCCGGC 2 cut(s) 85, 89
MseI TTAA 1 cut(s) 452
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 2 cut(s) 86, 90
MunI CAATTG 1 cut(s) 485
Mva1269I GAATGC 1 cut(s) 373
MwoI GCNNNNNNNGC 1 cut(s) 200
NaeI GCCGGC 2 cut(s) 87, 91
NdeII GATC 1 cut(s) 355
NgoMIV GCCGGC 2 cut(s) 85, 89
NlaIII CATG 3 cut(s) 186, 219, 293
NspI RCATGY 2 cut(s) 186, 293
OliI CACNNNNGTG 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PctI GAATGC 1 cut(s) 373
PdiI GCCGGC 2 cut(s) 87, 91
PkrI GCNGC 5 cut(s) 84, 135, 205, 258, 313
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 510
PsuI RGATCY 1 cut(s) 355
RigI GGCCGGCC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 141
SacI GAGCTC 1 cut(s) 510
SaqAI TTAA 1 cut(s) 452
SatI GCNGC 5 cut(s) 83, 134, 204, 257, 312
Sau3AI GATC 1 cut(s) 355
SchI GAGTC 1 cut(s) 48
SduI GDGCHC 2 cut(s) 37, 510
SfaNI GCATC 2 cut(s) 136, 144
Sfr274I CTCGAG 1 cut(s) 509
SlaI CTCGAG 1 cut(s) 509
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 1 cut(s) 485
SsiI CCGC 3 cut(s) 53, 82, 257
SstI GAGCTC 1 cut(s) 510
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 2 cut(s) 65, 352
TaqI TCGA 1 cut(s) 510
TasI AATT 1 cut(s) 485
TauI GCSGC 2 cut(s) 85, 259
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TseI GCWGC 3 cut(s) 133, 203, 311
TspDTI ATGAA 1 cut(s) 459
XceI RCATGY 2 cut(s) 186, 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
XhoI CTCGAG 1 cut(s) 509
ZraI GACGTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.