Prupe.8G073000_v2.0.a1

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000440
Physical Location & Seq
Forward (+)
10651789 .. 10655491
3703 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G073000.3

Sequence Viewer

Length: 1374 bp
ATGGGCTTTGTGGGTTTTGTTGCATTTTTACTTCGATGCTTTGATGTTCTTGCGTGGCCTCTACTTGCTCTGGTGTATCCTTTATGTTGTTCCATTAGGGCGATTGAGGCCAATTCTGTTTCAGATTCTGTGAAGTTGAATACTTATTGGGTTGTCTTCTCATTGATTCTGCTATTAGAACGTGCATCTATGAAGCTCCTAAAATGGCTCCCTCTGTGGCCATATATTAGGCTCATGATCGTCTTCTGTATGGTGATACCTCATTTCGATGGAGCTTTTTATGTCTATAAACACCTAATCTGTCCATGCCTGTCCATGGACCTCCAAATTGTTATCAACTGGTTCAACAAGCGGAAGAAATCCTCGTTCAGCAGAGACAATTTTCTTGCCGAGGTGGAGAGATATGTGAAGGAGAATGGAACTGAAGCTCTGGAAAAAATTGTTGCTTCCAAATCTGAGAGAACAAAGTCAAATCCCGATGAGAAAGAGTTGAAAGCAGTTTCATCTCTGGAGAAGAAAGAGGTTAGTCAGGCAGAGCCTAATCTCACTGGAACTGAAAACAGCAGATTTCCCAGTATGGATATTGAAGAAAAAGCCATTGGGGTTGCATCAGAGAGAGGAGTTCTGAACACTCCACCTTCAAAGAACGTTGAGGAGTGGACAAGTGCATTCAGTCAGGTAACAACCCAAAGTGGTACAACTTTTAACTCCCACCCGGACGGTAAAATACACAAGGCTGTATATGAGAAACTGAAAATAGAGAACCAGGCTGAAGCTAAGCTCACTCAAACGGAAAACGGTACATTTGCGGTCATCGAGACTAAAGAAAAATCAGTTGAGGTTGCAACAGGTAGAGAAGTTCTTGAGTCTTCCCAAAATGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAGCTAACAACTCAAAGTGAAGCAACTTTAAACTCCCACCTCCAAGGCAGAAAACACAAGGTGGCATGTGAGGCATTGAAAGCAAAGAGCTGGCCATTTGCGCCGAAAATTCCCCCGGAGTCAAAGGAATCTCATCAACGCAAAGAGGAGGAGCCAGGAAAGCGGCCAACAAGCAGTGCATCAAAACAAAAAGTTATTATAGATGAAAAGGCGCAAAGTCAGAAAAATAGCATTCCAGCTTCAGGGACAAAGACTTCTTATAAATCTAAAGAGGAGCCAGCAGAAGTTGCATCCATCAATGGAAGCCAACAAGGAAACCCGATTGAAGTTCCAAGCATGAAGGATTTAACTCTATCGTGCAATGTTTGTAATGTGCACTGCCCCAATGAGATTGTCATGGCATCGCATCTCAATGGCAGAAAACACCAGAAAAAGATGCAACAACGACAACAGAACCCAAATTAA

Protein Analysis

458

Amino Acids

51.31

Weight (kDa)

8.75

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1170
AciI CCGC 3 cut(s) 352, 809, 1072
AclI AACGTT 1 cut(s) 648
AcoI YGGCCR 3 cut(s) 218, 1001, 1073
AcsI RAATTY 1 cut(s) 1017
AcuI CTGAAG 3 cut(s) 444, 792, 1134
AdeI CACNNNGTG 1 cut(s) 970
AfaI GTAC 2 cut(s) 697, 802
AfiI CCNNNNNNNGG 2 cut(s) 316, 1151
AgsI TTSAA 7 cut(s) 139, 346, 493, 587, 642, 988, 1235
AjnI CCWGG 2 cut(s) 765, 1063
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
AluBI AGCT 8 cut(s) 196, 275, 428, 776, 781, 913, 999, 1148
AluI AGCT 8 cut(s) 196, 275, 428, 776, 781, 913, 999, 1148
Alw21I GWGCWC 2 cut(s) 904, 1287
Alw26I GTCTC 2 cut(s) 369, 812
Alw44I GTGCAC 1 cut(s) 1283
AlwNI CAGNNNCTG 1 cut(s) 128
AoxI GGCC 5 cut(s) 56, 108, 218, 1001, 1073
ApaLI GTGCAC 1 cut(s) 1283
ApoI RAATTY 1 cut(s) 1017
AspLEI GCGC 2 cut(s) 1012, 1123
AspS9I GGNCC 1 cut(s) 319
AsuC2I CCSGG 2 cut(s) 716, 1025
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 319
BaeGI GKGCMC 1 cut(s) 1287
BalI TGGCCA 2 cut(s) 220, 1003
BbsI GAAGAC 3 cut(s) 148, 235, 861
Bbv12I GWGCWC 2 cut(s) 904, 1287
BccI CCATC 2 cut(s) 263, 1211
BciT130I CCWGG 2 cut(s) 767, 1065
BciVI GTATCC 1 cut(s) 87
BcnI CCSGG 2 cut(s) 716, 1025
BcoDI GTCTC 2 cut(s) 369, 812
BfuI GTATCC 1 cut(s) 87
BisI GCNGC 1 cut(s) 1073
BlpI GCTNAGC 1 cut(s) 777
BlsI GCNGC 1 cut(s) 1074
Bme1390I CCNGG 4 cut(s) 716, 767, 1025, 1065
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 3 cut(s) 209, 1062, 1185
BmrFI CCNGG 4 cut(s) 716, 767, 1025, 1065
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 8 cut(s) 26, 194, 617, 1097, 1208, 1319, 1324, 1335
BmuI ACTGGG 1 cut(s) 567
BpiI GAAGAC 3 cut(s) 148, 235, 861
BpmI CTGGAG 1 cut(s) 530
Bpu1102I GCTNAGC 1 cut(s) 777
BpuEI CTTGAG 1 cut(s) 884
BpuMI CCSGG 2 cut(s) 716, 1025
BsaJI CCNNGG 4 cut(s) 315, 390, 952, 1023
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 1151
Bse1I ACTGG 3 cut(s) 344, 553, 573
Bse3DI GCAATG 1 cut(s) 1276
BseBI CCWGG 2 cut(s) 767, 1065
BseDI CCNNGG 4 cut(s) 315, 390, 952, 1023
BseGI GGATG 1 cut(s) 1199
BseLI CCNNNNNNNGG 2 cut(s) 316, 1151
BseMI GCAATG 1 cut(s) 1276
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 3 cut(s) 344, 553, 573
BseRI GAGGAG 5 cut(s) 633, 668, 1070, 1073, 1196
BseSI GKGCMC 1 cut(s) 1287
BshFI GGCC 5 cut(s) 58, 110, 220, 1003, 1075
BsiHKAI GWGCWC 2 cut(s) 904, 1287
BsiSI CCGG 2 cut(s) 716, 1025
BslFI GGGAC 1 cut(s) 1168
BslI CCNNNNNNNGG 2 cut(s) 316, 1151
BsmAI GTCTC 2 cut(s) 369, 812
BsmFI GGGAC 1 cut(s) 1168
BsmI GAATGC 2 cut(s) 668, 1140
BsnI GGCC 5 cut(s) 58, 110, 220, 1003, 1075
Bsp1286I GDGCHC 2 cut(s) 904, 1287
Bsp143I GATC 1 cut(s) 237
Bsp1720I GCTNAGC 1 cut(s) 777
Bsp19I CCATGG 1 cut(s) 315
BspACI CCGC 3 cut(s) 352, 809, 1072
BspANI GGCC 5 cut(s) 58, 110, 220, 1003, 1075
BspCNI CTCAG 1 cut(s) 448
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 3 cut(s) 209, 1062, 1185
BsrDI GCAATG 1 cut(s) 1276
BsrI ACTGG 3 cut(s) 344, 553, 573
BssECI CCNNGG 4 cut(s) 315, 390, 952, 1023
BssMI GATC 1 cut(s) 237
BssT1I CCWWGG 2 cut(s) 315, 952
Bst2UI CCWGG 2 cut(s) 767, 1065
Bst4CI ACNGT 2 cut(s) 722, 800
BstAPI GCANNNNNTGC 1 cut(s) 1196
BstC8I GCNNGC 2 cut(s) 1001, 1188
BstDEI CTNAG 2 cut(s) 456, 777
BstDSI CCRYGG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 1199
BstHHI GCGC 2 cut(s) 1012, 1123
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 2 cut(s) 369, 812
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 6 cut(s) 107, 980, 989, 1009, 1069, 1196
BstNI CCWGG 2 cut(s) 767, 1065
BstNSI RCATGY 1 cut(s) 978
BstSCI CCNGG 4 cut(s) 714, 765, 1023, 1063
BstSLI GKGCMC 1 cut(s) 1287
BstV2I GAAGAC 3 cut(s) 148, 235, 861
BsuI GTATCC 1 cut(s) 87
BsuRI GGCC 5 cut(s) 58, 110, 220, 1003, 1075
BtgI CCRYGG 1 cut(s) 315
BtgZI GCGATG 1 cut(s) 1296
BtsCI GGATG 1 cut(s) 1199
BtsI GCAGTG 2 cut(s) 1090, 1285
BtsIMutI CAGTG 3 cut(s) 546, 1090, 1285
Cac8I GCNNGC 2 cut(s) 1001, 1188
CaiI CAGNNNCTG 1 cut(s) 128
CciI TCATGA 1 cut(s) 234
CfoI GCGC 2 cut(s) 1012, 1123
Cfr13I GGNCC 1 cut(s) 319
Csp6I GTAC 2 cut(s) 696, 801
CviAII CATG 6 cut(s) 235, 306, 316, 975, 1246, 1306
CviQI GTAC 2 cut(s) 696, 801
DdeI CTNAG 2 cut(s) 456, 777
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
DraI TTTAAA 1 cut(s) 939
DraIII CACNNNGTG 1 cut(s) 970
EaeI YGGCCR 3 cut(s) 218, 1001, 1073
Eco130I CCWWGG 2 cut(s) 315, 952
Eco47I GGWCC 1 cut(s) 319
Eco57I CTGAAG 3 cut(s) 444, 792, 1134
EcoRII CCWGG 2 cut(s) 765, 1063
EcoT14I CCWWGG 2 cut(s) 315, 952
ErhI CCWWGG 2 cut(s) 315, 952
FaeI CATG 6 cut(s) 238, 309, 319, 978, 1249, 1309
FaqI GGGAC 1 cut(s) 1168
FatI CATG 6 cut(s) 234, 305, 315, 974, 1245, 1305
Fnu4HI GCNGC 1 cut(s) 1073
FokI GGATG 1 cut(s) 1186
Fsp4HI GCNGC 1 cut(s) 1073
GlaI GCGC 2 cut(s) 1011, 1122
GluI GCNGC 1 cut(s) 1073
GsuI CTGGAG 1 cut(s) 530
HaeIII GGCC 5 cut(s) 58, 110, 220, 1003, 1075
HapII CCGG 2 cut(s) 716, 1025
HhaI GCGC 2 cut(s) 1012, 1123
Hin1II CATG 6 cut(s) 238, 309, 319, 978, 1249, 1309
Hin6I GCGC 2 cut(s) 1010, 1121
HinP1I GCGC 2 cut(s) 1010, 1121
HinfI GANTC 5 cut(s) 125, 166, 866, 1028, 1037
HpaII CCGG 2 cut(s) 716, 1025
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 3 cut(s) 660, 894, 1285
Hpy188I TCNGA 5 cut(s) 124, 457, 613, 627, 1131
Hpy188III TCNNGA 7 cut(s) 235, 431, 476, 509, 817, 863, 883
Hpy8I GTNNAC 3 cut(s) 660, 894, 1285
HpyAV CCTTC 3 cut(s) 403, 648, 1243
HpyCH4III ACNGT 2 cut(s) 722, 800
HpyCH4IV ACGT 2 cut(s) 181, 648
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 980, 989, 1009, 1069, 1196
HpyF3I CTNAG 2 cut(s) 456, 777
HpySE526I ACGT 2 cut(s) 181, 648
Hsp92II CATG 6 cut(s) 238, 309, 319, 978, 1249, 1309
HspAI GCGC 2 cut(s) 1010, 1121
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 5 cut(s) 201, 213, 272, 1060, 1183
LweI GCATC 8 cut(s) 26, 194, 617, 1097, 1208, 1319, 1324, 1335
MaeII ACGT 2 cut(s) 181, 648
MaeIII GTNAC 1 cut(s) 679
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 6 cut(s) 148, 235, 367, 526, 599, 861
MhlI GDGCHC 2 cut(s) 904, 1287
MlsI TGGCCA 2 cut(s) 220, 1003
MluCI AATT 6 cut(s) 112, 327, 379, 438, 1017, 1369
MluNI TGGCCA 2 cut(s) 220, 1003
MlyI GAGTC 2 cut(s) 875, 1037
Mox20I TGGCCA 2 cut(s) 220, 1003
MscI TGGCCA 2 cut(s) 220, 1003
MseI TTAA 4 cut(s) 705, 938, 1256, 1372
MslI CAYNNNNRTG 2 cut(s) 267, 1320
Msp20I TGGCCA 2 cut(s) 220, 1003
MspI CCGG 2 cut(s) 716, 1025
MspR9I CCNGG 4 cut(s) 716, 767, 1025, 1065
Mva1269I GAATGC 2 cut(s) 668, 1140
MvaI CCWGG 2 cut(s) 767, 1065
MwoI GCNNNNNNNGC 6 cut(s) 107, 980, 989, 1009, 1069, 1196
NciI CCSGG 2 cut(s) 716, 1025
NcoI CCATGG 1 cut(s) 315
NdeII GATC 1 cut(s) 237
NlaIII CATG 6 cut(s) 238, 309, 319, 978, 1249, 1309
NlaIV GGNNCC 3 cut(s) 209, 1062, 1185
NmeAIII GCCGAG 1 cut(s) 415
NspI RCATGY 1 cut(s) 978
PagI TCATGA 1 cut(s) 234
PctI GAATGC 2 cut(s) 668, 1140
PfeI GAWTC 3 cut(s) 125, 166, 1037
PkrI GCNGC 1 cut(s) 1074
PleI GAGTC 2 cut(s) 874, 1036
PpsI GAGTC 2 cut(s) 874, 1036
PsiI TTATAA 1 cut(s) 1170
Psp1406I AACGTT 1 cut(s) 648
Psp6I CCWGG 2 cut(s) 765, 1063
PspGI CCWGG 2 cut(s) 765, 1063
PspN4I GGNNCC 3 cut(s) 209, 1062, 1185
PspPI GGNCC 1 cut(s) 319
PstNI CAGNNNCTG 1 cut(s) 128
RsaI GTAC 2 cut(s) 697, 802
RsaNI GTAC 2 cut(s) 696, 801
RseI CAYNNNNRTG 2 cut(s) 267, 1320
SaqAI TTAA 4 cut(s) 705, 938, 1256, 1372
SatI GCNGC 1 cut(s) 1073
Sau3AI GATC 1 cut(s) 237
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 2 cut(s) 875, 1037
ScrFI CCNGG 4 cut(s) 716, 767, 1025, 1065
SduI GDGCHC 2 cut(s) 904, 1287
SfaNI GCATC 8 cut(s) 26, 194, 617, 1097, 1208, 1319, 1324, 1335
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 2 cut(s) 267, 1320
SmlI CTYRAG 1 cut(s) 863
SmoI CTYRAG 1 cut(s) 863
Sse9I AATT 6 cut(s) 112, 327, 379, 438, 1017, 1369
SsiI CCGC 3 cut(s) 352, 809, 1072
StyD4I CCNGG 4 cut(s) 714, 765, 1023, 1063
StyI CCWWGG 2 cut(s) 315, 952
TaaI ACNGT 2 cut(s) 722, 800
TaiI ACGT 2 cut(s) 184, 651
TaqI TCGA 3 cut(s) 34, 267, 816
TasI AATT 6 cut(s) 112, 327, 379, 438, 1017, 1369
TauI GCSGC 1 cut(s) 1075
TfiI GAWTC 3 cut(s) 125, 166, 1037
Tru1I TTAA 4 cut(s) 705, 938, 1256, 1372
Tru9I TTAA 4 cut(s) 705, 938, 1256, 1372
TscAI CASTG 3 cut(s) 553, 1090, 1292
TspDTI ATGAA 4 cut(s) 206, 492, 1128, 1262
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 3 cut(s) 553, 1090, 1292
VneI GTGCAC 1 cut(s) 1283
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 1 cut(s) 1017
XceI RCATGY 1 cut(s) 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.