Rh6BG175900

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000440
Physical Location & Seq
Reverse (-)
29670636 .. 29677353
6718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG175900.1

Sequence Viewer

Length: 987 bp
ATGCTCTCCGTCACCGCCATCGTCATCGCCGCCGACTACATGCTCGACAGCCTGGTCGAGCTGCTGTTCAGGGTCGCTAACCACCCCAACCACGACGTCGACCTCCAGGGGCGTTTCAATTCTGAATACGACGGTGCCTCTGGTGCCGTTCAGTGCTCCTCAGGTGTTGGTGAATGGCTCTGGGAAGGAGGGTTCGGGTGGGTTGAACTACAAGGAGTTGAGGAGGGCTATGTCGTTTTTGCTGGAGTTGGAAGGCCCCCAGTTTCTCTCCTCACCAAGTCACCAGCTCGCCTCCTCGAGTCCTCCACAGCAGTTCTGGGCTCGTTCTGTCTGGAGTTCTGGGCTCATTCTCCTCCACAGCAGCAAGCGAGCAAGCCACCTCCACCTCAGTACACTCATCCGAATTGTTACGCCACCCGTAACCATACGAAGACGCTGAAGCTCAAGATGGGCTTACTGGGTCTTGTTGGATTTGCGCTCCAATGCTTTCATGTTCTTGCATGGCCTCTCTTTGCTCTGGTCTATCCTCTGTATTCTTCCATTAGAGCAATCGAGACAAATTCCATTACAGATACTCAGAAGATAAATACGTATTGGGTCGTCTTCTCATTGATCGTGCTATTTGAACATGCTTTTATGAAGCTCCTTGAATGGTTCCTGCTCTGGCCAAACATTAGGCTACTGATTGTCTTCTTTTTGGTGATGCCACATTTTGATGGTGCCTTATATGTCTATAAACACCTTATCTATCCATGCCTCTCCATGGATCCCCAAATTGTTATCAACTTGTTCAACAAGCGGAAGGAGTCCCTTGCGAGAGATAACTTTCTCTTTGAGGTGGAGAGATATGTCAAGGAGAATGGACCTGAAGGTTTGGAAAAATTTATTGCTTGCAAGTTAACGAGGACAAATCTCAATGTAAAAGAGATTGATGCAGTTTCATCCATGGATAATGAAGGGGTAGAATGCATAAGATCCCTGATGTGA

Protein Analysis

328

Amino Acids

37.1

Weight (kDa)

5.86

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 176 - 252 9.5e-19 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AatII GACGTC 1 cut(s) 99
AccB1I GGYRCC 3 cut(s) 134, 143, 719
AccI GTMKAC 1 cut(s) 99
AciI CCGC 3 cut(s) 15, 30, 799
AclWI GGATC 3 cut(s) 761, 774, 969
AcoI YGGCCR 1 cut(s) 665
AcsI RAATTY 2 cut(s) 559, 881
AcuI CTGAAG 2 cut(s) 458, 888
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 763
AgsI TTSAA 5 cut(s) 118, 206, 626, 650, 793
AjnI CCWGG 2 cut(s) 51, 105
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
AluBI AGCT 4 cut(s) 61, 287, 442, 643
AluI AGCT 4 cut(s) 61, 287, 442, 643
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 548
AlwI GGATC 3 cut(s) 761, 774, 969
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 3 cut(s) 254, 503, 665
ApeKI GCWGC 2 cut(s) 61, 361
ApoI RAATTY 2 cut(s) 559, 881
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 2 cut(s) 255, 863
AsuHPI GGTGA 5 cut(s) 4, 182, 265, 273, 712
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 1 cut(s) 863
AxyI CCTNAGG 1 cut(s) 160
BalI TGGCCA 1 cut(s) 667
BamHI GGATCC 1 cut(s) 766
BanI GGYRCC 3 cut(s) 134, 143, 719
BanII GRGCYC 2 cut(s) 323, 346
BbsI GAAGAC 3 cut(s) 437, 595, 682
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 48, 373
BccI CCATC 3 cut(s) 26, 442, 710
BceAI ACGGC 1 cut(s) 131
BciT130I CCWGG 2 cut(s) 53, 107
BcoDI GTCTC 1 cut(s) 548
BisI GCNGC 3 cut(s) 30, 62, 362
BlsI GCNGC 3 cut(s) 31, 63, 363
Bme1390I CCNGG 2 cut(s) 53, 107
Bme18I GGWCC 1 cut(s) 863
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 2 cut(s) 255, 863
BmiI GGNNCC 6 cut(s) 136, 145, 257, 656, 721, 768
BmrFI CCNGG 2 cut(s) 53, 107
BmrI ACTGGG 2 cut(s) 254, 467
BmsI GCATC 2 cut(s) 693, 922
BmuI ACTGGG 2 cut(s) 254, 467
BpiI GAAGAC 3 cut(s) 437, 595, 682
BpmI CTGGAG 3 cut(s) 89, 264, 353
BpuEI CTTGAG 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 591
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 106, 762, 945
Bsc4I CCNNNNNNNGG 1 cut(s) 763
Bse1I ACTGG 2 cut(s) 260, 462
Bse21I CCTNAGG 1 cut(s) 160
BseBI CCWGG 2 cut(s) 53, 107
BseDI CCNNGG 3 cut(s) 106, 762, 945
BseGI GGATG 2 cut(s) 397, 941
BseLI CCNNNNNNNGG 1 cut(s) 763
BseMII CTCAG 3 cut(s) 174, 401, 590
BseNI ACTGG 2 cut(s) 260, 462
BseRI GAGGAG 5 cut(s) 148, 236, 260, 284, 342
BseXI GCAGC 2 cut(s) 48, 373
BshFI GGCC 3 cut(s) 256, 505, 667
BshNI GGYRCC 3 cut(s) 134, 143, 719
BsiHKAI GWGCWC 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 793
BslI CCNNNNNNNGG 1 cut(s) 763
BsmAI GTCTC 1 cut(s) 548
BsmFI GGGAC 1 cut(s) 793
BsmI GAATGC 1 cut(s) 971
BsnI GGCC 3 cut(s) 256, 505, 667
BsoBI CYCGRG 1 cut(s) 296
Bsp1286I GDGCHC 3 cut(s) 158, 323, 346
Bsp143I GATC 3 cut(s) 612, 766, 974
Bsp19I CCATGG 2 cut(s) 762, 945
BspACI CCGC 3 cut(s) 15, 30, 799
BspANI GGCC 3 cut(s) 256, 505, 667
BspCNI CTCAG 3 cut(s) 173, 400, 589
BspLI GGNNCC 6 cut(s) 136, 145, 257, 656, 721, 768
BspPI GGATC 3 cut(s) 761, 774, 969
BspT107I GGYRCC 3 cut(s) 134, 143, 719
BsrI ACTGG 2 cut(s) 260, 462
BssECI CCNNGG 3 cut(s) 106, 762, 945
BssMI GATC 3 cut(s) 612, 766, 974
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 2 cut(s) 762, 945
Bst2UI CCWGG 2 cut(s) 53, 107
Bst4CI ACNGT 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 591
BstC8I GCNNGC 5 cut(s) 289, 366, 370, 374, 892
BstDEI CTNAG 3 cut(s) 160, 387, 576
BstDSI CCRYGG 2 cut(s) 762, 945
BstF5I GGATG 2 cut(s) 397, 941
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 3 cut(s) 615, 769, 977
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 3 cut(s) 612, 766, 974
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 2 cut(s) 53, 107
BstNSI RCATGY 2 cut(s) 43, 632
BstSCI CCNGG 2 cut(s) 51, 105
BstSNI TACGTA 1 cut(s) 591
BstV1I GCAGC 2 cut(s) 48, 373
BstV2I GAAGAC 3 cut(s) 437, 595, 682
BstX2I RGATCY 2 cut(s) 766, 974
BstYI RGATCY 2 cut(s) 766, 974
Bsu36I CCTNAGG 1 cut(s) 160
BsuRI GGCC 3 cut(s) 256, 505, 667
BtgI CCRYGG 2 cut(s) 762, 945
BtgZI GCGATG 1 cut(s) 10
BtsCI GGATG 2 cut(s) 397, 941
BtsIMutI CAGTG 1 cut(s) 158
Cac8I GCNNGC 5 cut(s) 289, 366, 370, 374, 892
CfoI GCGC 1 cut(s) 478
Cfr13I GGNCC 2 cut(s) 255, 863
CseI GACGC 1 cut(s) 442
Csp6I GTAC 1 cut(s) 391
CviAII CATG 7 cut(s) 40, 491, 501, 629, 753, 763, 946
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 3 cut(s) 160, 387, 576
DpnI GATC 3 cut(s) 614, 768, 976
DpnII GATC 3 cut(s) 612, 766, 974
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 665
Eco105I TACGTA 1 cut(s) 591
Eco130I CCWWGG 2 cut(s) 762, 945
Eco24I GRGCYC 2 cut(s) 323, 346
Eco47I GGWCC 1 cut(s) 863
Eco57I CTGAAG 2 cut(s) 458, 888
Eco81I CCTNAGG 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 51, 105
EcoT14I CCWWGG 2 cut(s) 762, 945
EcoT22I ATGCAT 1 cut(s) 971
EcoT38I GRGCYC 2 cut(s) 323, 346
ErhI CCWWGG 2 cut(s) 762, 945
FaeI CATG 7 cut(s) 43, 494, 504, 632, 756, 766, 949
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 1 cut(s) 793
FatI CATG 7 cut(s) 39, 490, 500, 628, 752, 762, 945
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 30, 62, 362
FokI GGATG 2 cut(s) 384, 928
FriOI GRGCYC 2 cut(s) 323, 346
Fsp4HI GCNGC 3 cut(s) 30, 62, 362
GlaI GCGC 1 cut(s) 477
GluI GCNGC 3 cut(s) 30, 62, 362
GsuI CTGGAG 3 cut(s) 89, 264, 353
HaeIII GGCC 3 cut(s) 256, 505, 667
HgaI GACGC 1 cut(s) 442
HhaI GCGC 1 cut(s) 478
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 7 cut(s) 43, 494, 504, 632, 756, 766, 949
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HincII GTYRAC 2 cut(s) 100, 900
HindII GTYRAC 2 cut(s) 100, 900
HinfI GANTC 2 cut(s) 299, 806
HpaI GTTAAC 1 cut(s) 900
HphI GGTGA 5 cut(s) 4, 182, 265, 273, 712
Hpy166II GTNNAC 3 cut(s) 100, 393, 900
Hpy188I TCNGA 3 cut(s) 124, 402, 579
Hpy188III TCNNGA 3 cut(s) 332, 445, 553
Hpy8I GTNNAC 3 cut(s) 100, 393, 900
Hpy99I CGWCG 3 cut(s) 98, 101, 134
HpyAV CCTTC 5 cut(s) 179, 246, 796, 863, 950
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 2 cut(s) 96, 590
HpyCH4V TGCA 4 cut(s) 500, 894, 935, 969
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 3 cut(s) 160, 387, 576
HpySE526I ACGT 2 cut(s) 96, 590
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 7 cut(s) 43, 494, 504, 632, 756, 766, 949
HspAI GCGC 1 cut(s) 476
KspAI GTTAAC 1 cut(s) 900
Kzo9I GATC 3 cut(s) 612, 766, 974
LmnI GCTCC 3 cut(s) 161, 483, 648
Lsp1109I GCAGC 2 cut(s) 48, 373
LweI GCATC 2 cut(s) 693, 922
MaeII ACGT 2 cut(s) 96, 590
MaeIII GTNAC 4 cut(s) 10, 279, 407, 419
MalI GATC 3 cut(s) 614, 768, 976
MboI GATC 3 cut(s) 612, 766, 974
MboII GAAGA 5 cut(s) 442, 528, 592, 595, 682
MflI RGATCY 2 cut(s) 766, 974
MhlI GDGCHC 3 cut(s) 158, 323, 346
MlsI TGGCCA 1 cut(s) 667
MluCI AATT 5 cut(s) 118, 403, 559, 774, 881
MluNI TGGCCA 1 cut(s) 667
MlyI GAGTC 2 cut(s) 308, 815
MmeI TCCRAC 2 cut(s) 229, 448
Mox20I TGGCCA 1 cut(s) 667
Mph1103I ATGCAT 1 cut(s) 971
MscI TGGCCA 1 cut(s) 667
MseI TTAA 1 cut(s) 899
MslI CAYNNNNRTG 1 cut(s) 714
Msp20I TGGCCA 1 cut(s) 667
MspR9I CCNGG 2 cut(s) 53, 107
Mva1269I GAATGC 1 cut(s) 971
MvaI CCWGG 2 cut(s) 53, 107
MwoI GCNNNNNNNGC 1 cut(s) 143
NcoI CCATGG 2 cut(s) 762, 945
NdeII GATC 3 cut(s) 612, 766, 974
NlaIII CATG 7 cut(s) 43, 494, 504, 632, 756, 766, 949
NlaIV GGNNCC 6 cut(s) 136, 145, 257, 656, 721, 768
NmuCI GTSAC 2 cut(s) 10, 279
NsiI ATGCAT 1 cut(s) 971
NspI RCATGY 2 cut(s) 43, 632
PaeR7I CTCGAG 1 cut(s) 296
PctI GAATGC 1 cut(s) 971
PkrI GCNGC 3 cut(s) 31, 63, 363
PleI GAGTC 2 cut(s) 307, 814
PpsI GAGTC 2 cut(s) 307, 814
Ppu21I YACGTR 1 cut(s) 591
Psp6I CCWGG 2 cut(s) 51, 105
PspGI CCWGG 2 cut(s) 51, 105
PspN4I GGNNCC 6 cut(s) 136, 145, 257, 656, 721, 768
PspPI GGNCC 2 cut(s) 255, 863
PspXI VCTCGAGB 1 cut(s) 296
PsuI RGATCY 2 cut(s) 766, 974
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 1 cut(s) 714
SalI GTCGAC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 899
SatI GCNGC 3 cut(s) 30, 62, 362
Sau3AI GATC 3 cut(s) 612, 766, 974
Sau96I GGNCC 2 cut(s) 255, 863
SchI GAGTC 2 cut(s) 308, 815
ScrFI CCNGG 2 cut(s) 53, 107
SduI GDGCHC 3 cut(s) 158, 323, 346
SfaNI GCATC 2 cut(s) 693, 922
Sfr274I CTCGAG 1 cut(s) 296
SinI GGWCC 1 cut(s) 863
SlaI CTCGAG 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 714
SmlI CTYRAG 2 cut(s) 296, 443
SmoI CTYRAG 2 cut(s) 296, 443
SnaBI TACGTA 1 cut(s) 591
Sse9I AATT 5 cut(s) 118, 403, 559, 774, 881
SsiI CCGC 3 cut(s) 15, 30, 799
StyD4I CCNGG 2 cut(s) 51, 105
StyI CCWWGG 2 cut(s) 762, 945
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 2 cut(s) 99, 593
TaqI TCGA 5 cut(s) 45, 57, 99, 297, 552
TasI AATT 5 cut(s) 118, 403, 559, 774, 881
TatI WGTACW 1 cut(s) 390
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 899
Tru9I TTAA 1 cut(s) 899
TscAI CASTG 1 cut(s) 158
TseFI GTSAC 2 cut(s) 10, 279
TseI GCWGC 2 cut(s) 61, 361
Tsp45I GTSAC 2 cut(s) 10, 279
TspDTI ATGAA 4 cut(s) 479, 653, 930, 969
TspRI CASTG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 863
XapI RAATTY 2 cut(s) 559, 881
XceI RCATGY 2 cut(s) 43, 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XhoI CTCGAG 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 99
ZraI GACGTC 1 cut(s) 97
Zsp2I ATGCAT 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.