Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002817.1

Orthogroup ID

OG0000440

Physical Location & Seq

Genomic Coordinates Forward (+)

75997 .. 78207

Gene Structure 2211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002817.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atggaaatatatgaaaagccggttgaggctggaataggtatagaagatccagagactcctaaagaagtccagaaagagtggacttgtgctctctgtcaagtaaccactacatgtgaaagcaatttgaattcccatctgcaagggcgaaaacacaaggcagcatatgaggcagtgaaagtaaggaaccaggcatttttgtccaagattgccgcagcttcaactgcaaaaacatccaatcagccaaataaggcgccaggaaagagtttcccgagcagtggatcaaaaccaaaagttcctatgaatgaaaattcaaaatccataaaggcaaatggtggacagaatgatgtcaaagttgtgcaggtgaatgaaaaaggcattgagtttgcagctgatggagaaactctgaatactccacccccaaagaaagtccaggagtggaccaccgtcagtctgctaccaactcaaactgatgccatttttagttcccctcttggtgataataaacacaaggctacatacgaggggctgaagataaagaatgaggcagagccgaagctcactcggcctgaaaaccatactgttgcagccatggaaatatatgaaaagctggttgaggttggaacaggtatagaagatcgagaggctcctaaagaagtccagaaagagtggacttgtgctctctgtcaggaagctgtttttaaaagtaacccgggatctacttttgttttggaagttgatccatcgagtaatcggtttcaaaggcttttcctagcttatgcaagctgtgttgaaggctttgaattctgtgttcctgtattgtatgtggatgggacttttgggaatagtatttacaatgggcagattctttgtgcaactggaatgaatggaaatcaaggttatttcattggtcttttcgaaattgtggagcggcatgctcccgttgaccgtgcagcggcaccttgcaatatcttttattaccccccaataaattttatgttattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0042538 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22 zf-met

Protein Analysis

334

Amino Acids

36.71

Weight (kDa)

5.71

Isoelectric Point (pI)

25.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica	Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis	pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis	RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata	RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora	Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa	Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha	Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana	Rw6G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	349
Acc36I	ACCTGC	1 cut(s)	349
AccB1I	GGYRCC	2 cut(s)	250, 955
AccBSI	CCGCTC	1 cut(s)	928
AciI	CCGC	3 cut(s)	210, 928, 953
AclWI	GGATC	4 cut(s)	41, 286, 721, 731
AcsI	RAATTY	4 cut(s)	127, 307, 800, 988
AcuI	CTGAAG	1 cut(s)	548
AcyI	GRCGYC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	275, 952
AflIII	ACRYGT	1 cut(s)	110
AgsI	TTSAA	6 cut(s)	127, 219, 312, 758, 791, 800
AjnI	CCWGG	3 cut(s)	186, 253, 429
AluBI	AGCT	7 cut(s)	215, 389, 556, 607, 692, 773, 783
AluI	AGCT	7 cut(s)	215, 389, 556, 607, 692, 773, 783
Alw21I	GWGCWC	2 cut(s)	91, 679
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	4 cut(s)	41, 286, 721, 731
Ama87I	CYCGRG	2 cut(s)	268, 709
AoxI	GGCC	1 cut(s)	563
ApeKI	GCWGC	5 cut(s)	158, 212, 386, 584, 950
ApoI	RAATTY	4 cut(s)	127, 307, 800, 988
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	438
AsuC2I	CCSGG	2 cut(s)	710, 711
AsuHPI	GGTGA	2 cut(s)	373, 506
AsuII	TTCGAA	1 cut(s)	915
AvaI	CYCGRG	2 cut(s)	268, 709
AvaII	GGWCC	1 cut(s)	438
BanI	GGYRCC	2 cut(s)	250, 955
Bbv12I	GWGCWC	2 cut(s)	91, 679
BbvI	GCAGC	5 cut(s)	170, 224, 398, 596, 962
BccI	CCATC	4 cut(s)	141, 386, 748, 821
BciT130I	CCWGG	3 cut(s)	188, 255, 431
BcnI	CCSGG	2 cut(s)	710, 711
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	770
BfoI	RGCGCY	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	349
BisI	GCNGC	8 cut(s)	159, 210, 213, 387, 585, 929, 951, 954
BlsI	GCNGC	8 cut(s)	160, 211, 214, 388, 586, 930, 952, 955
Bme1390I	CCNGG	5 cut(s)	188, 255, 431, 710, 711
Bme18I	GGWCC	1 cut(s)	438
BmeT110I	CYCGRG	2 cut(s)	268, 709
BmgT120I	GGNCC	1 cut(s)	438
BmiI	GGNNCC	4 cut(s)	185, 252, 645, 957
BmrFI	CCNGG	5 cut(s)	188, 255, 431, 710, 711
BmsI	GCATC	1 cut(s)	460
BoxI	GACNNNNGTC	1 cut(s)	443
Bpu14I	TTCGAA	1 cut(s)	915
BpuMI	CCSGG	2 cut(s)	710, 711
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	588, 709
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 952
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	880
BseBI	CCWGG	3 cut(s)	188, 255, 431
BseDI	CCNNGG	2 cut(s)	588, 709
BseGI	GGATG	2 cut(s)	230, 832
BseLI	CCNNNNNNNGG	2 cut(s)	275, 952
BseNI	ACTGG	1 cut(s)	880
BseXI	GCAGC	5 cut(s)	170, 224, 398, 596, 962
BsgI	GTGCAG	2 cut(s)	377, 969
BshFI	GGCC	1 cut(s)	565
BshNI	GGYRCC	2 cut(s)	250, 955
BsiHKAI	GWGCWC	2 cut(s)	91, 679
BsiHKCI	CYCGRG	2 cut(s)	268, 709
BsiSI	CCGG	2 cut(s)	20, 710
BslFI	GGGAC	1 cut(s)	844
BslI	CCNNNNNNNGG	2 cut(s)	275, 952
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	844
BsnI	GGCC	1 cut(s)	565
BsoBI	CYCGRG	2 cut(s)	268, 709
Bsp119I	TTCGAA	1 cut(s)	915
Bsp1286I	GDGCHC	2 cut(s)	91, 679
Bsp143I	GATC	5 cut(s)	46, 278, 634, 713, 736
Bsp19I	CCATGG	1 cut(s)	588
BspACI	CCGC	3 cut(s)	210, 928, 953
BspANI	GGCC	1 cut(s)	565
BspLI	GGNNCC	4 cut(s)	185, 252, 645, 957
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	4 cut(s)	41, 286, 721, 731
BspT104I	TTCGAA	1 cut(s)	915
BspT107I	GGYRCC	2 cut(s)	250, 955
BsrBI	CCGCTC	1 cut(s)	928
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	880
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	588, 709
BssMI	GATC	5 cut(s)	46, 278, 634, 713, 736
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	588
Bst2UI	CCWGG	3 cut(s)	188, 255, 431
Bst4CI	ACNGT	3 cut(s)	445, 580, 947
BstACI	GRCGYC	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	915
BstC8I	GCNNGC	2 cut(s)	781, 933
BstDSI	CCRYGG	1 cut(s)	588
BstF5I	GGATG	2 cut(s)	230, 832
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	5 cut(s)	49, 281, 637, 716, 739
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	5 cut(s)	46, 278, 634, 713, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 221, 562
BstNI	CCWGG	3 cut(s)	188, 255, 431
BstNSI	RCATGY	2 cut(s)	114, 935
BstPAI	GACNNNNGTC	1 cut(s)	443
BstSCI	CCNGG	5 cut(s)	186, 253, 429, 708, 709
BstV1I	GCAGC	5 cut(s)	170, 224, 398, 596, 962
BstX2I	RGATCY	2 cut(s)	46, 713
BstYI	RGATCY	2 cut(s)	46, 713
BsuRI	GGCC	1 cut(s)	565
BtgI	CCRYGG	1 cut(s)	588
BtsCI	GGATG	2 cut(s)	230, 832
BtsI	GCAGTG	2 cut(s)	177, 280
BtsIMutI	CAGTG	2 cut(s)	177, 280
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	2 cut(s)	781, 933
CfoI	GCGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	438
Cfr9I	CCCGGG	1 cut(s)	709
CviAII	CATG	3 cut(s)	111, 589, 932
DinI	GGCGCC	1 cut(s)	252
DpnI	GATC	5 cut(s)	48, 280, 636, 715, 738
DpnII	GATC	5 cut(s)	46, 278, 634, 713, 736
DraI	TTTAAA	1 cut(s)	700
Eco130I	CCWWGG	1 cut(s)	588
Eco47I	GGWCC	1 cut(s)	438
Eco57I	CTGAAG	1 cut(s)	548
Eco88I	CYCGRG	2 cut(s)	268, 709
EcoRI	GAATTC	2 cut(s)	127, 800
EcoRII	CCWGG	3 cut(s)	186, 253, 429
EcoT14I	CCWWGG	1 cut(s)	588
EgeI	GGCGCC	1 cut(s)	252
EheI	GGCGCC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	3 cut(s)	114, 592, 935
FaqI	GGGAC	1 cut(s)	844
FatI	CATG	3 cut(s)	110, 588, 931
FauNDI	CATATG	1 cut(s)	163
Fnu4HI	GCNGC	8 cut(s)	159, 210, 213, 387, 585, 929, 951, 954
FokI	GGATG	2 cut(s)	217, 839
Fsp4HI	GCNGC	8 cut(s)	159, 210, 213, 387, 585, 929, 951, 954
FspBI	CTAG	1 cut(s)	770
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	8 cut(s)	159, 210, 213, 387, 585, 929, 951, 954
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	565
HapII	CCGG	2 cut(s)	20, 710
HhaI	GCGC	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	3 cut(s)	114, 592, 935
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	943
HindII	GTYRAC	1 cut(s)	943
HinfI	GANTC	2 cut(s)	55, 862
HpaII	CCGG	2 cut(s)	20, 710
HphI	GGTGA	2 cut(s)	373, 506
Hpy166II	GTNNAC	5 cut(s)	81, 335, 438, 669, 943
Hpy188I	TCNGA	1 cut(s)	405
Hpy188III	TCNNGA	6 cut(s)	50, 70, 268, 638, 658, 686
Hpy8I	GTNNAC	5 cut(s)	81, 335, 438, 669, 943
HpyAV	CCTTC	1 cut(s)	785
HpyCH4III	ACNGT	3 cut(s)	445, 580, 947
HpyCH4V	TGCA	9 cut(s)	139, 224, 358, 386, 584, 779, 872, 950, 963
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 221, 562
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	3 cut(s)	114, 592, 935
HspAI	GCGC	1 cut(s)	251
KasI	GGCGCC	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	46, 278, 634, 713, 736
LmnI	GCTCC	3 cut(s)	649, 925, 940
Lsp1109I	GCAGC	5 cut(s)	170, 224, 398, 596, 962
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	1 cut(s)	770
MaeIII	GTNAC	2 cut(s)	100, 704
MalI	GATC	5 cut(s)	48, 280, 636, 715, 738
MbiI	CCGCTC	1 cut(s)	928
MboI	GATC	5 cut(s)	46, 278, 634, 713, 736
MboII	GAAGA	3 cut(s)	56, 541, 644
MflI	RGATCY	2 cut(s)	46, 713
MhlI	GDGCHC	2 cut(s)	91, 679
MluCI	AATT	6 cut(s)	121, 127, 307, 800, 918, 988
Mly113I	GGCGCC	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	598
MnlI	CCTC	7 cut(s)	19, 160, 498, 514, 535, 607, 634
MseI	TTAA	1 cut(s)	699
MspA1I	CMGCKG	2 cut(s)	389, 953
MspI	CCGG	2 cut(s)	20, 710
MspR9I	CCNGG	5 cut(s)	188, 255, 431, 710, 711
MvaI	CCWGG	3 cut(s)	188, 255, 431
MwoI	GCNNNNNNNGC	3 cut(s)	167, 221, 562
NarI	GGCGCC	1 cut(s)	251
NciI	CCSGG	2 cut(s)	710, 711
NcoI	CCATGG	1 cut(s)	588
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	5 cut(s)	46, 278, 634, 713, 736
NlaIII	CATG	3 cut(s)	114, 592, 935
NlaIV	GGNNCC	4 cut(s)	185, 252, 645, 957
NmeAIII	GCCGAG	1 cut(s)	541
NspI	RCATGY	2 cut(s)	114, 935
NspV	TTCGAA	1 cut(s)	915
PaeI	GCATGC	1 cut(s)	935
PaqCI	CACCTGC	1 cut(s)	349
PciI	ACATGT	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	862
PfoI	TCCNGGA	1 cut(s)	429
PkrI	GCNGC	8 cut(s)	160, 211, 214, 388, 586, 930, 952, 955
PleI	GAGTC	1 cut(s)	49
PluTI	GGCGCC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	49
PscI	ACATGT	1 cut(s)	110
PshAI	GACNNNNGTC	1 cut(s)	443
Psp6I	CCWGG	3 cut(s)	186, 253, 429
PspGI	CCWGG	3 cut(s)	186, 253, 429
PspN4I	GGNNCC	4 cut(s)	185, 252, 645, 957
PspPI	GGNCC	1 cut(s)	438
PsuI	RGATCY	2 cut(s)	46, 713
PvuII	CAGCTG	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	8 cut(s)	159, 210, 213, 387, 585, 929, 951, 954
Sau3AI	GATC	5 cut(s)	46, 278, 634, 713, 736
Sau96I	GGNCC	1 cut(s)	438
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	5 cut(s)	188, 255, 431, 710, 711
SduI	GDGCHC	2 cut(s)	91, 679
SfaNI	GCATC	1 cut(s)	460
SfoI	GGCGCC	1 cut(s)	252
SfuI	TTCGAA	1 cut(s)	915
SinI	GGWCC	1 cut(s)	438
SmaI	CCCGGG	1 cut(s)	711
SphI	GCATGC	1 cut(s)	935
Sse9I	AATT	6 cut(s)	121, 127, 307, 800, 918, 988
SsiI	CCGC	3 cut(s)	210, 928, 953
SspDI	GGCGCC	1 cut(s)	250
SspMI	CTAG	1 cut(s)	770
StyD4I	CCNGG	5 cut(s)	186, 253, 429, 708, 709
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	3 cut(s)	445, 580, 947
TaqI	TCGA	3 cut(s)	637, 743, 915
TasI	AATT	6 cut(s)	121, 127, 307, 800, 918, 988
TauI	GCSGC	3 cut(s)	212, 931, 956
TfiI	GAWTC	1 cut(s)	862
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	2 cut(s)	177, 280
TseI	GCWGC	5 cut(s)	158, 212, 386, 584, 950
TspDTI	ATGAA	7 cut(s)	27, 314, 318, 381, 615, 892, 896
TspMI	CCCGGG	1 cut(s)	709
TspRI	CASTG	2 cut(s)	177, 280
VpaK11BI	GGWCC	1 cut(s)	438
XapI	RAATTY	4 cut(s)	127, 307, 800, 988
XceI	RCATGY	2 cut(s)	114, 935
XmaI	CCCGGG	1 cut(s)	709
XspI	CTAG	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.