Rroxscaffold_7G00198170

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000440
Physical Location & Seq
Forward (+)
43190423 .. 43195269
4847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00198170.1

Sequence Viewer

Length: 1116 bp
ATGGGCTTACTGGGTCTTGTTGGATTTGCGCTCCAATGCTTTCATGTTCTTGCATGGCCTCTCTTTGCTCTGGTCTATCCTCTGTATTCTTCCATTAGAGCAATCGAGACAAATTCCATTACAGATACTCACAAGTTAAATACGTATTGGGTCGTCTTCTCATTGATCTTGCTATTTGAGCATGCTTTTATGAAGCTCCTTGAATGGTTCCTGCTCTGGCCATACATTAGGCTACTGATTGTCTTCTTTTTGGTGATGCCACATTTTGATGGTGCCTTATATGTCTATAAACACCTTATCTGTCCATGCCTCTCCATGGATCCCCAAATTGTTATCAACTTGTTCAACAAGCGGAAGGAGTCCCTTGCGAGAGATAACTTTCTCTTTGAGGTGGAGAGATATGTCAAGGAGAATGGACCTGAAGGTTTGGAAAAATTTATTGCTTGCAAGTTAACGAGGACAAATCTCAATGTAAAAGAGATCGATGCAGTTTCATCCATGGATAATGAAGCGTCAAAATCCATAAAGCCAAATGGTGGACAGAATGATATCAAAGCTGTGCAGGTAATGGTGAAAAAGAAGGAAACAACTGCTAGCCAGGCAGCATATGAGGCACTGAAGGCAGGGAACCAGGCATTTGTGCCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACCAAATAAGGAGCCAGGAAAGAGTATTCCGAGCAGTGGATCAAAACAAAAAGTTACTGTAAATGAAAATGTGCAAGGCCAGAAAAATAGTAGTCCAGCTCCAATCACAAAGAAGCACTATAAACCGAAAGAGCAGCTAGTAGATGGTGTGTCCAGCAATGGCCAGAAAGGGAAAATTGCTATACACGTCGAGAAGGTACAAAGTCAACACCCAAAGCCAAATGAAGTTCCAAGGGTGAAGAGTTCTCCTATGCGGTGCAATATTTGTGACGTATGCTGTTCTGATGCGATTGACTTGCTGTCTCATCTCAACGGAAAAAAACACAAGGAAAATGTGCAAGAGTACCTAATCAGGGTTGAAAGGATGAAAAAGCCCAGGGGCCTTTGTGATACCGAAACTGGTGAGTTTGACATGGTATCTCATCTTAAGTGA

Protein Analysis

371

Amino Acids

41.75

Weight (kDa)

9.2

Isoelectric Point (pI)

26.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 27 - 103 3.9e-19 TB2/DP1, HVA22 family
zf-met PF12874 313 - 336 7.4e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 553
AccB1I GGYRCC 1 cut(s) 272
AccB7I CCANNNNNTGG 1 cut(s) 536
AciI CCGC 2 cut(s) 352, 937
AclWI GGATC 3 cut(s) 314, 327, 730
AcoI YGGCCR 2 cut(s) 218, 844
AcsI RAATTY 2 cut(s) 112, 434
AcuI CTGAAG 2 cut(s) 441, 638
AfaI GTAC 2 cut(s) 882, 1028
AfiI CCNNNNNNNGG 4 cut(s) 316, 536, 719, 1036
AflII CTTAAG 1 cut(s) 1109
AflIII ACRYGT 1 cut(s) 868
AgsI TTSAA 4 cut(s) 203, 346, 663, 1043
AhdI GACNNNNNGTC 1 cut(s) 982
AjiI CACGTC 1 cut(s) 871
AjnI CCWGG 4 cut(s) 597, 630, 697, 1058
AluBI AGCT 5 cut(s) 196, 557, 659, 782, 820
AluI AGCT 5 cut(s) 196, 557, 659, 782, 820
Alw26I GTCTC 2 cut(s) 101, 990
AlwI GGATC 3 cut(s) 314, 327, 730
AoxI GGCC 5 cut(s) 56, 218, 760, 844, 1063
ApeKI GCWGC 2 cut(s) 602, 817
ApoI RAATTY 2 cut(s) 112, 434
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 2 cut(s) 416, 1063
AsuHPI GGTGA 4 cut(s) 265, 583, 931, 1097
AsuNHI GCTAGC 1 cut(s) 593
AvaII GGWCC 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 645
BalI TGGCCA 2 cut(s) 220, 846
BamHI GGATCC 1 cut(s) 319
BanI GGYRCC 1 cut(s) 272
BbsI GAAGAC 2 cut(s) 148, 235
BbvI GCAGC 2 cut(s) 614, 829
BccI CCATC 2 cut(s) 263, 821
BcgI CGANNNNNNTGC 2 cut(s) 961, 995
BciT130I CCWGG 4 cut(s) 599, 632, 699, 1060
BcoDI GTCTC 2 cut(s) 101, 990
BfaI CTAG 2 cut(s) 594, 821
BfrI CTTAAG 1 cut(s) 1109
BfuAI ACCTGC 1 cut(s) 553
BisI GCNGC 2 cut(s) 603, 818
BlsI GCNGC 2 cut(s) 604, 819
Bme1390I CCNGG 4 cut(s) 599, 632, 699, 1060
Bme18I GGWCC 1 cut(s) 416
BmeRI GACNNNNNGTC 1 cut(s) 982
BmgBI CACGTC 1 cut(s) 871
BmgT120I GGNCC 2 cut(s) 416, 1063
BmiI GGNNCC 6 cut(s) 209, 274, 321, 629, 696, 1064
BmrFI CCNGG 4 cut(s) 599, 632, 699, 1060
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 3 cut(s) 246, 475, 958
BmtI GCTAGC 1 cut(s) 597
BmuI ACTGGG 1 cut(s) 20
BpiI GAAGAC 2 cut(s) 148, 235
Bsa29I ATCGAT 1 cut(s) 483
BsaAI YACGTR 1 cut(s) 144
BsaJI CCNNGG 5 cut(s) 315, 498, 914, 1058, 1059
Bsc4I CCNNNNNNNGG 4 cut(s) 316, 536, 719, 1036
Bse1I ACTGG 2 cut(s) 15, 1087
Bse3DI GCAATG 1 cut(s) 847
BseBI CCWGG 4 cut(s) 599, 632, 699, 1060
BseCI ATCGAT 1 cut(s) 483
BseDI CCNNGG 5 cut(s) 315, 498, 914, 1058, 1059
BseGI GGATG 3 cut(s) 494, 674, 1053
BseLI CCNNNNNNNGG 4 cut(s) 316, 536, 719, 1036
BseMI GCAATG 1 cut(s) 847
BseNI ACTGG 2 cut(s) 15, 1087
BseSI GKGCMC 1 cut(s) 645
BseXI GCAGC 2 cut(s) 614, 829
BseYI CCCAGC 1 cut(s) 655
BsgI GTGCAG 1 cut(s) 581
BshFI GGCC 5 cut(s) 58, 220, 762, 846, 1065
BshNI GGYRCC 1 cut(s) 272
BshVI ATCGAT 1 cut(s) 483
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 4 cut(s) 316, 536, 719, 1036
BsmAI GTCTC 2 cut(s) 101, 990
BsmFI GGGAC 1 cut(s) 346
BsnI GGCC 5 cut(s) 58, 220, 762, 846, 1065
Bsp1286I GDGCHC 1 cut(s) 645
Bsp143I GATC 4 cut(s) 165, 319, 480, 722
Bsp19I CCATGG 2 cut(s) 315, 498
BspACI CCGC 2 cut(s) 352, 937
BspANI GGCC 5 cut(s) 58, 220, 762, 846, 1065
BspDI ATCGAT 1 cut(s) 483
BspLI GGNNCC 6 cut(s) 209, 274, 321, 629, 696, 1064
BspMI ACCTGC 1 cut(s) 553
BspOI GCTAGC 1 cut(s) 597
BspPI GGATC 3 cut(s) 314, 327, 730
BspT107I GGYRCC 1 cut(s) 272
BspTI CTTAAG 1 cut(s) 1109
BsrDI GCAATG 1 cut(s) 847
BsrI ACTGG 2 cut(s) 15, 1087
BssECI CCNNGG 5 cut(s) 315, 498, 914, 1058, 1059
BssMI GATC 4 cut(s) 165, 319, 480, 722
BssT1I CCWWGG 3 cut(s) 315, 498, 914
Bst2UI CCWGG 4 cut(s) 599, 632, 699, 1060
Bst4CI ACNGT 1 cut(s) 742
Bst6I CTCTTC 1 cut(s) 917
BstAFI CTTAAG 1 cut(s) 1109
BstBAI YACGTR 1 cut(s) 144
BstC8I GCNNGC 3 cut(s) 183, 445, 595
BstDSI CCRYGG 2 cut(s) 315, 498
BstF5I GGATG 3 cut(s) 494, 674, 1053
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 4 cut(s) 168, 322, 483, 725
BstMAI GTCTC 2 cut(s) 101, 990
BstMBI GATC 4 cut(s) 165, 319, 480, 722
BstMWI GCNNNNNNNGC 5 cut(s) 178, 599, 611, 620, 665
BstNI CCWGG 4 cut(s) 599, 632, 699, 1060
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 4 cut(s) 597, 630, 697, 1058
BstSLI GKGCMC 1 cut(s) 645
BstSNI TACGTA 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 614, 829
BstV2I GAAGAC 2 cut(s) 148, 235
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
Bsu15I ATCGAT 1 cut(s) 483
BsuRI GGCC 5 cut(s) 58, 220, 762, 846, 1065
BsuTUI ATCGAT 1 cut(s) 483
BtgI CCRYGG 2 cut(s) 315, 498
BtrI CACGTC 1 cut(s) 871
BtsCI GGATG 3 cut(s) 494, 674, 1053
BtsI GCAGTG 1 cut(s) 724
BtsIMutI CAGTG 2 cut(s) 614, 724
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 3 cut(s) 183, 445, 595
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 416, 1063
ClaI ATCGAT 1 cut(s) 483
CseI GACGC 1 cut(s) 501
Csp6I GTAC 2 cut(s) 881, 1027
CviAII CATG 7 cut(s) 44, 54, 182, 306, 316, 499, 1096
CviQI GTAC 2 cut(s) 881, 1027
DpnI GATC 4 cut(s) 167, 321, 482, 724
DpnII GATC 4 cut(s) 165, 319, 480, 722
DriI GACNNNNNGTC 1 cut(s) 982
EaeI YGGCCR 2 cut(s) 218, 844
Eam1104I CTCTTC 1 cut(s) 917
Eam1105I GACNNNNNGTC 1 cut(s) 982
EarI CTCTTC 1 cut(s) 917
Eco105I TACGTA 1 cut(s) 144
Eco130I CCWWGG 3 cut(s) 315, 498, 914
Eco32I GATATC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 416
Eco57I CTGAAG 2 cut(s) 441, 638
EcoO109I RGGNCCY 1 cut(s) 1063
EcoRII CCWGG 4 cut(s) 597, 630, 697, 1058
EcoRV GATATC 1 cut(s) 550
EcoT14I CCWWGG 3 cut(s) 315, 498, 914
ErhI CCWWGG 3 cut(s) 315, 498, 914
FaeI CATG 7 cut(s) 47, 57, 185, 309, 319, 502, 1099
FaqI GGGAC 1 cut(s) 346
FatI CATG 7 cut(s) 43, 53, 181, 305, 315, 498, 1095
FauNDI CATATG 1 cut(s) 607
Fnu4HI GCNGC 2 cut(s) 603, 818
FokI GGATG 3 cut(s) 481, 661, 1060
Fsp4HI GCNGC 2 cut(s) 603, 818
FspBI CTAG 2 cut(s) 594, 821
GlaI GCGC 1 cut(s) 30
GluI GCNGC 2 cut(s) 603, 818
GsaI CCCAGC 1 cut(s) 659
HaeIII GGCC 5 cut(s) 58, 220, 762, 846, 1065
HgaI GACGC 1 cut(s) 501
HhaI GCGC 1 cut(s) 31
Hin1II CATG 7 cut(s) 47, 57, 185, 309, 319, 502, 1099
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 2 cut(s) 453, 890
HindII GTYRAC 2 cut(s) 453, 890
HinfI GANTC 1 cut(s) 359
HpaI GTTAAC 1 cut(s) 453
HphI GGTGA 4 cut(s) 265, 583, 931, 1097
Hpy166II GTNNAC 3 cut(s) 453, 539, 890
Hpy188I TCNGA 2 cut(s) 714, 967
Hpy188III TCNNGA 2 cut(s) 106, 874
Hpy8I GTNNAC 3 cut(s) 453, 539, 890
Hpy99I CGWCG 1 cut(s) 875
HpyAV CCTTC 5 cut(s) 349, 416, 574, 613, 871
HpyCH4III ACNGT 1 cut(s) 742
HpyCH4IV ACGT 3 cut(s) 143, 870, 954
HpyCH4V TGCA 8 cut(s) 53, 447, 488, 562, 668, 757, 942, 1021
HpyF10VI GCNNNNNNNGC 5 cut(s) 178, 599, 611, 620, 665
HpySE526I ACGT 3 cut(s) 143, 870, 954
Hsp92II CATG 7 cut(s) 47, 57, 185, 309, 319, 502, 1099
HspAI GCGC 1 cut(s) 29
KspAI GTTAAC 1 cut(s) 453
Kzo9I GATC 4 cut(s) 165, 319, 480, 722
LmnI GCTCC 4 cut(s) 36, 201, 694, 787
Lsp1109I GCAGC 2 cut(s) 614, 829
LweI GCATC 3 cut(s) 246, 475, 958
MaeI CTAG 2 cut(s) 594, 821
MaeII ACGT 3 cut(s) 143, 870, 954
MaeIII GTNAC 2 cut(s) 736, 950
MalI GATC 4 cut(s) 167, 321, 482, 724
MboI GATC 4 cut(s) 165, 319, 480, 722
MboII GAAGA 4 cut(s) 81, 148, 235, 934
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 645
MlsI TGGCCA 2 cut(s) 220, 846
MluCI AATT 4 cut(s) 112, 327, 434, 858
MluNI TGGCCA 2 cut(s) 220, 846
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 6 cut(s) 69, 90, 320, 382, 450, 604
Mox20I TGGCCA 2 cut(s) 220, 846
MscI TGGCCA 2 cut(s) 220, 846
MseI TTAA 3 cut(s) 137, 452, 1110
MslI CAYNNNNRTG 1 cut(s) 267
Msp20I TGGCCA 2 cut(s) 220, 846
MspCI CTTAAG 1 cut(s) 1109
MspR9I CCNGG 4 cut(s) 599, 632, 699, 1060
MvaI CCWGG 4 cut(s) 599, 632, 699, 1060
MwoI GCNNNNNNNGC 5 cut(s) 178, 599, 611, 620, 665
NcoI CCATGG 2 cut(s) 315, 498
NdeI CATATG 1 cut(s) 607
NdeII GATC 4 cut(s) 165, 319, 480, 722
NheI GCTAGC 1 cut(s) 593
NlaIII CATG 7 cut(s) 47, 57, 185, 309, 319, 502, 1099
NlaIV GGNNCC 6 cut(s) 209, 274, 321, 629, 696, 1064
NmuCI GTSAC 1 cut(s) 950
NspI RCATGY 1 cut(s) 185
PaeI GCATGC 1 cut(s) 185
PasI CCCWGGG 1 cut(s) 1059
PflMI CCANNNNNTGG 1 cut(s) 536
PkrI GCNGC 2 cut(s) 604, 819
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Ppu21I YACGTR 1 cut(s) 144
Psp6I CCWGG 4 cut(s) 597, 630, 697, 1058
PspFI CCCAGC 1 cut(s) 655
PspGI CCWGG 4 cut(s) 597, 630, 697, 1058
PspN4I GGNNCC 6 cut(s) 209, 274, 321, 629, 696, 1064
PspPI GGNCC 2 cut(s) 416, 1063
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 2 cut(s) 882, 1028
RsaNI GTAC 2 cut(s) 881, 1027
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 3 cut(s) 137, 452, 1110
SatI GCNGC 2 cut(s) 603, 818
Sau3AI GATC 4 cut(s) 165, 319, 480, 722
Sau96I GGNCC 2 cut(s) 416, 1063
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 4 cut(s) 599, 632, 699, 1060
SduI GDGCHC 1 cut(s) 645
SfaNI GCATC 3 cut(s) 246, 475, 958
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 1109
SmoI CTYRAG 1 cut(s) 1109
SnaBI TACGTA 1 cut(s) 144
SphI GCATGC 1 cut(s) 185
Sse9I AATT 4 cut(s) 112, 327, 434, 858
SsiI CCGC 2 cut(s) 352, 937
SspI AATATT 1 cut(s) 946
SspMI CTAG 2 cut(s) 594, 821
StyD4I CCNGG 4 cut(s) 597, 630, 697, 1058
StyI CCWWGG 3 cut(s) 315, 498, 914
TaaI ACNGT 1 cut(s) 742
TaiI ACGT 3 cut(s) 146, 873, 957
TaqI TCGA 3 cut(s) 105, 483, 873
TasI AATT 4 cut(s) 112, 327, 434, 858
Tru1I TTAA 3 cut(s) 137, 452, 1110
Tru9I TTAA 3 cut(s) 137, 452, 1110
TscAI CASTG 2 cut(s) 621, 724
TseFI GTSAC 1 cut(s) 950
TseI GCWGC 2 cut(s) 602, 817
Tsp45I GTSAC 1 cut(s) 950
TspDTI ATGAA 7 cut(s) 32, 206, 483, 522, 762, 921, 1064
TspGWI ACGGA 1 cut(s) 1011
TspRI CASTG 2 cut(s) 621, 724
Van91I CCANNNNNTGG 1 cut(s) 536
Vha464I CTTAAG 1 cut(s) 1109
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 2 cut(s) 112, 434
XceI RCATGY 1 cut(s) 185
XspI CTAG 2 cut(s) 594, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.