Rh6AG172100

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000440
Physical Location & Seq
Reverse (-)
27880610 .. 27889237
8628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG172100.1

Sequence Viewer

Length: 3519 bp
ATGGGCTTACTGGGTCTCGTTGGATTAGCGCTCCAATGCTTTGATGTTCTTGCATGGCCTCTCTTTGCTCTCGTCTATCCTCTGTATTCTTCCATTAGAGCAATCGAGACAAATTCCATTACAGATACTCACAAGATAAACACGTATTGGGTCGTCTTCTCATTGATCTTGCTATTTGAACACGCTTTTATGAAGCTCCTTGAATGGTTCCTGCTCTGGCCATACATTAGGCTACTGATTGTCTTCTTTTTGGTGATGCCACATTTTGATGGTGCCTTATATGTCTATAAACACCTTATCTGTCCATGCCTCTCCATGGATCCCCAAATTGTTATCAACTTGTTCAACAAGCGGAAGGAGTCCCTTGTGAGAGATAACTTTCTCTCTGAGGTGGAGAGATATGTAAAGGAGAATGGACCTGAAGGTTTGGAAAGATTTATTGCTTGCAAGTCAACGAGGACAAATCTCGATGTAAAAGAGTTCAATGCCGTTTCATCCATGGATACTGAAGCGTCAAAATCCATAAAGCCAAATGGTGTACAGAATGATATCAAAGCCGTGCAGGTAATGGCAAAAAAGAAGCGAACAACTGCTAGTCAAGTTTGTCAGGCCGAGCCTAATCTCACTGTGAATGAAGATAAATTTTCTTCTACGAAGATGAATGAAAAAGCCATTGATGGTGCAGCACATAGAGAAATTCTGAAGACACCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCACCACTCAAACTGATGCAACTTTGAGTTCCCCTCTCGGTGATAATAAAGACAAGGCTACATACCAGGCACTGAAGATAAAGAATGAGGCAGATCCTAAGCTCACTTGGCCTGAAAACCGTGCTGCTGCAGCTATGGAAATATATGAAAAGCCAGTTGAGGTTGGAACAGGTATAGAAGATCCAGAGACTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAAGTAACCACTACATGTGAAAGCAATTTGAATTCCCACCTGCAAGGGCGAAAACACAAGGCAGCATATGAGGCTATGAAAGCAAGGAACCAGGAATTTTTGCCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACCGAATGAGGTGCCAGGAAAGAGTTCCCCTAGCAGTGGATCAAAACAAAAGGTTACTATCAATGAAAATTCGAAATCCATAGAGGCAAATGGTGGACAGAATGATATCAAAGCTGTGCAGGTAACGGCAAAAAAGAAGGAAACAACTTCTAGCCAAGTTTGTCAGGCCGAGCCTAATCTCACTGTGAATGAAGATAAATTTTATTCTACGAAGATGAATGAAAAAGCCATAGTGGGTGCAGCACATAGAGAAATTCTGAAGACACCACCTCCAAAGAATGTCCAGAAGGAGTGGACTACCACTCAAACTGATGCAACTTTGAGTTCCCCTCTCGGTGATATTGAAGACAAGGCTACATACGAGGCACTGAAGATAAAGAATGAGGCAGATCCTAAGCTCACTTGGCCTGAAACCCGTGCTGCTGCAGCTATGGAAATATATGAAAAGCCAGTTGAGGTTGGAACAGGTATAGAAGATCCAGAGACTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAAGTAACCACTACATGTGAAAGCAATTTGAATTCCCACCTGCAAGGGCGAAAACACAAGGCAGCATATGAGGCAGTGAAAGCAAGCAACCAGGAATTTTTGCCCAAGATTGCCCCAGCTCCAACTGCAAAAACATCCAATCAACTGAATGAGGCGCCAGGAAAGAGTTCCCCGAGCAGTGGATCAAAACAAAAGGTTACTATCAATGAAAATTTGAAATCCATAGAGGCAAATGGTGGACAGAATGATATCAAAGCTGTGCAGGTAACGGCAAAAAAGAAGGAAACAACTTCTAGCCAAGTTTGTCAGGCCGAGCCTAATCTCACTGTGAATGAAGATAAATTTTATTCTACGAAGATGAATGAAAAAGCCATAGAGGGTGCAGCACATAGAGAAATTCTGAAGACACCACCTCCAAAGAATGTCCAGAAGGAGTGGACCACCACTCAAACTGATGCAACTTTGAGTTCCCCTCTCGGTGATATTGAAGACAAGGCTACATACGAGGCACTGAAGATAAAGAATGAGGCAGATCCTAAGCTCACTTGGCCTGAAAACCGTGCTGCTGCAGCTATGGAAATATATGAAAAGCCAGTTGAGGTTGGAACAGGTATAGAAGATCCAGAGACTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAAGTAACCACTACATGTGAAAGCAATTTGAATTCCCACCTGCAAGGGCGAAAACACAAGGCAGCATATGAGGCAGTGAAAGCAAGCAACCAGGAATTTTTGCCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACTGAATGAGGCGCCAGGAAAGAGTTCCCCGAGCAGTGGATCAAAACAAAAGGTTACTATCAATGAAAATTCGAAATCCATAGAGGCAAATGGTGGACAGAATGATATCAAAGCTATGCAGGTAACGGCAAAAAAGAAGGAAACAACTTCTAGCCAAGTTTGTCAGGCCGAGCCTAATCTCACTGTGAATGAAGATAAATTTTCTTCTACAAAGATGAATGAAAAAGCCATAGAGGGTGCAGCCGATAGAGAAATTCTGAAGACACCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCACAGTCAGTCCGCTACAAACTCAAACTGATGCAACTTTGAGTTCCCCTCCTGGTGATAATAAAGACAAGGCTACATACGAGGCGATGAAGATAAAGAATGTGGCAGAGGCTAAGCTCACTTGGACTGAAAACCGTGTTGTTGTAGCCATGGAAATATATGAAAAGCCGTTTGAGGTTGGAACAGGTATAGAAGATCCAAAGACTCCTGAAGAAGTCCAGAAAGAGTGGACTTGTACCCTGTGTCAAGTAACCACAACATGTGAAACCAATTTGAATTCCCACCTGCAAGGGCGAAAACACAAGGCAGCATATGAGGCAGTGAAAGCAAGGAACCAGGAATTTTTGCCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACCGAATGAGGTGCCAGGAAAGAGTTCCCCGAGCAGTGGATCAAAACAAAAGGTTACTATCAATGAAAATTTGAAATCCATTGAGGCAAATGGTGGACAGAATGATATCAAAGCTATGCAGGTAACGGCAAAAAAGAAGGAAGCAATTTCTAGCCAAGTCAGTCGGGCAGAGCCTAATCTCACTGTGAATGAAGATAAATTTTCTTCTTCGAAGATGAATGAAAAAGCAATTGAGGGTGCAGCCGATAGAGAAATTCTGAAGACACCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCACAGTCAGTCCGCTACAAACTCCAACTGATGCAACTTTGAGTTCCCCTCTTGGTGATAATAAAGACAAGGTACATACGAGGCACTGA

Protein Analysis

1172

Amino Acids

129.25

Weight (kDa)

8.21

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 27 - 103 3e-18 TB2/DP1, HVA22 family
zf-met PF12874 318 - 342 4.4e-09 Zinc-finger of C2H2 type
zf-met PF12874 541 - 565 4.4e-09 Zinc-finger of C2H2 type
zf-met PF12874 764 - 788 4.4e-09 Zinc-finger of C2H2 type
zf-met PF12874 992 - 1016 1e-08 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 4 cut(s) 1017, 1686, 2355, 3039
Acc36I ACCTGC 9 cut(s) 553, 1017, 1222, 1686, 1891, 2355, 2560, 3039, 3244
AccB1I GGYRCC 5 cut(s) 272, 1123, 1792, 2461, 3145
AciI CCGC 3 cut(s) 352, 2759, 3443
AcoI YGGCCR 1 cut(s) 218
AcyI GRCGYC 2 cut(s) 1793, 2462
AfaI GTAC 3 cut(s) 540, 2983, 3504
AfeI AGCGCT 1 cut(s) 30
AfiI CCNNNNNNNGG 5 cut(s) 316, 1148, 1817, 2486, 3170
AflIII ACRYGT 5 cut(s) 141, 983, 1652, 2321, 3005
Alw21I GWGCWC 3 cut(s) 964, 1633, 2302
Alw26I GTCTC 5 cut(s) 20, 101, 920, 1589, 2258
AlwNI CAGNNNCTG 1 cut(s) 811
Ama87I CYCGRG 3 cut(s) 1810, 2479, 3163
Aor51HI AGCGCT 1 cut(s) 30
AoxI GGCC 9 cut(s) 56, 218, 609, 848, 1278, 1517, 1947, 2186, 2616
Asp700I GAANNNNTTC 4 cut(s) 1135, 1804, 2473, 3157
AspLEI GCGC 3 cut(s) 31, 1795, 2464
AspS9I GGNCC 5 cut(s) 416, 738, 2076, 2745, 3429
AsuHPI GGTGA 6 cut(s) 265, 791, 1460, 2129, 2813, 3497
AsuII TTCGAA 3 cut(s) 1184, 2522, 3344
AvaI CYCGRG 3 cut(s) 1810, 2479, 3163
AvaII GGWCC 5 cut(s) 416, 738, 2076, 2745, 3429
BalI TGGCCA 1 cut(s) 220
BamHI GGATCC 1 cut(s) 319
BanI GGYRCC 5 cut(s) 272, 1123, 1792, 2461, 3145
BbsI GAAGAC 9 cut(s) 148, 235, 710, 1379, 1464, 2048, 2133, 2717, 3401
Bbv12I GWGCWC 3 cut(s) 964, 1633, 2302
BccI CCATC 2 cut(s) 263, 671
BceAI ACGGC 7 cut(s) 473, 542, 1254, 1923, 2592, 2899, 3276
BcgI CGANNNNNNTGC 4 cut(s) 1105, 1139, 3127, 3161
BciVI GTATCC 1 cut(s) 496
BcoDI GTCTC 5 cut(s) 20, 101, 920, 1589, 2258
BfaI CTAG 6 cut(s) 594, 1143, 1263, 1932, 2601, 3285
BfmI CTRYAG 3 cut(s) 867, 1536, 2205
BfoI RGCGCY 3 cut(s) 32, 1796, 2465
BfuAI ACCTGC 9 cut(s) 553, 1017, 1222, 1686, 1891, 2355, 2560, 3039, 3244
BfuI GTATCC 1 cut(s) 496
BlpI GCTNAGC 1 cut(s) 2859
Bme18I GGWCC 5 cut(s) 416, 738, 2076, 2745, 3429
BmeT110I CYCGRG 3 cut(s) 1810, 2479, 3163
BmgT120I GGNCC 5 cut(s) 416, 738, 2076, 2745, 3429
BmiI GGNNCC 9 cut(s) 209, 274, 321, 1058, 1125, 1794, 2463, 3080, 3147
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 6 cut(s) 246, 745, 1414, 2083, 2767, 3451
BmuI ACTGGG 1 cut(s) 20
BoxI GACNNNNGTC 2 cut(s) 2750, 3434
BpiI GAAGAC 9 cut(s) 148, 235, 710, 1379, 1464, 2048, 2133, 2717, 3401
Bpu10I CCTNAGC 3 cut(s) 837, 1506, 2175
Bpu1102I GCTNAGC 1 cut(s) 2859
Bpu14I TTCGAA 3 cut(s) 1184, 2522, 3344
BsaAI YACGTR 1 cut(s) 144
BsaHI GRCGYC 2 cut(s) 1793, 2462
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 315, 498, 2895
Bsc4I CCNNNNNNNGG 5 cut(s) 316, 1148, 1817, 2486, 3170
Bse1I ACTGG 4 cut(s) 15, 893, 1562, 2231
BseDI CCNNGG 3 cut(s) 315, 498, 2895
BseGI GGATG 5 cut(s) 494, 1103, 1772, 2441, 3125
BseLI CCNNNNNNNGG 5 cut(s) 316, 1148, 1817, 2486, 3170
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 4 cut(s) 15, 893, 1562, 2231
BseYI CCCAGC 4 cut(s) 1084, 1753, 2422, 3106
BsgI GTGCAG 8 cut(s) 581, 702, 1250, 1371, 1919, 2040, 2709, 3393
BshFI GGCC 9 cut(s) 58, 220, 611, 850, 1280, 1519, 1949, 2188, 2618
BshNI GGYRCC 5 cut(s) 272, 1123, 1792, 2461, 3145
BsiHKAI GWGCWC 3 cut(s) 964, 1633, 2302
BsiHKCI CYCGRG 3 cut(s) 1810, 2479, 3163
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 5 cut(s) 316, 1148, 1817, 2486, 3170
BsmAI GTCTC 5 cut(s) 20, 101, 920, 1589, 2258
BsmFI GGGAC 1 cut(s) 346
BsnI GGCC 9 cut(s) 58, 220, 611, 850, 1280, 1519, 1949, 2188, 2618
Bso31I GGTCTC 1 cut(s) 20
BsoBI CYCGRG 3 cut(s) 1810, 2479, 3163
Bsp119I TTCGAA 3 cut(s) 1184, 2522, 3344
Bsp1286I GDGCHC 3 cut(s) 964, 1633, 2302
Bsp1407I TGTACA 1 cut(s) 538
Bsp1720I GCTNAGC 1 cut(s) 2859
Bsp19I CCATGG 3 cut(s) 315, 498, 2895
BspACI CCGC 3 cut(s) 352, 2759, 3443
BspANI GGCC 9 cut(s) 58, 220, 611, 850, 1280, 1519, 1949, 2188, 2618
BspCNI CTCAG 1 cut(s) 379
BspLI GGNNCC 9 cut(s) 209, 274, 321, 1058, 1125, 1794, 2463, 3080, 3147
BspMAI CTGCAG 3 cut(s) 871, 1540, 2209
BspMI ACCTGC 9 cut(s) 553, 1017, 1222, 1686, 1891, 2355, 2560, 3039, 3244
BspT104I TTCGAA 3 cut(s) 1184, 2522, 3344
BspT107I GGYRCC 5 cut(s) 272, 1123, 1792, 2461, 3145
BspTNI GGTCTC 1 cut(s) 20
BsrGI TGTACA 1 cut(s) 538
BsrI ACTGG 4 cut(s) 15, 893, 1562, 2231
BssECI CCNNGG 3 cut(s) 315, 498, 2895
BssNI GRCGYC 2 cut(s) 1793, 2462
BssT1I CCWWGG 3 cut(s) 315, 498, 2895
BstACI GRCGYC 2 cut(s) 1793, 2462
BstAUI TGTACA 1 cut(s) 538
BstBAI YACGTR 1 cut(s) 144
BstBI TTCGAA 3 cut(s) 1184, 2522, 3344
BstC8I GCNNGC 3 cut(s) 445, 1723, 2392
BstDEI CTNAG 5 cut(s) 387, 837, 1506, 2175, 2859
BstDSI CCRYGG 3 cut(s) 315, 498, 2895
BstF5I GGATG 5 cut(s) 494, 1103, 1772, 2441, 3125
BstH2I RGCGCY 3 cut(s) 32, 1796, 2465
BstHHI GCGC 3 cut(s) 31, 1795, 2464
BstMAI GTCTC 5 cut(s) 20, 101, 920, 1589, 2258
BstNSI RCATGY 4 cut(s) 987, 1656, 2325, 3009
BstPAI GACNNNNGTC 2 cut(s) 2750, 3434
BstSFI CTRYAG 3 cut(s) 867, 1536, 2205
BstV2I GAAGAC 9 cut(s) 148, 235, 710, 1379, 1464, 2048, 2133, 2717, 3401
BstX2I RGATCY 8 cut(s) 319, 832, 919, 1501, 1588, 2170, 2257, 2941
BstYI RGATCY 8 cut(s) 319, 832, 919, 1501, 1588, 2170, 2257, 2941
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 9 cut(s) 58, 220, 611, 850, 1280, 1519, 1949, 2188, 2618
BtgI CCRYGG 3 cut(s) 315, 498, 2895
BtgZI GCGATG 1 cut(s) 2846
BtsCI GGATG 5 cut(s) 494, 1103, 1772, 2441, 3125
BtsI GCAGTG 7 cut(s) 1153, 1719, 1822, 2388, 2491, 3072, 3175
BveI ACCTGC 9 cut(s) 553, 1017, 1222, 1686, 1891, 2355, 2560, 3039, 3244
Cac8I GCNNGC 3 cut(s) 445, 1723, 2392
CaiI CAGNNNCTG 1 cut(s) 811
CfoI GCGC 3 cut(s) 31, 1795, 2464
Cfr13I GGNCC 5 cut(s) 416, 738, 2076, 2745, 3429
CseI GACGC 1 cut(s) 501
Csp6I GTAC 3 cut(s) 539, 2982, 3503
CviAII CATG 9 cut(s) 54, 306, 316, 499, 984, 1653, 2322, 2896, 3006
CviQI GTAC 3 cut(s) 539, 2982, 3503
DdeI CTNAG 5 cut(s) 387, 837, 1506, 2175, 2859
DinI GGCGCC 2 cut(s) 1794, 2463
EaeI YGGCCR 1 cut(s) 218
Eco130I CCWWGG 3 cut(s) 315, 498, 2895
Eco31I GGTCTC 1 cut(s) 20
Eco32I GATATC 5 cut(s) 550, 1219, 1888, 2557, 3241
Eco47I GGWCC 5 cut(s) 416, 738, 2076, 2745, 3429
Eco47III AGCGCT 1 cut(s) 30
Eco88I CYCGRG 3 cut(s) 1810, 2479, 3163
EcoRI GAATTC 4 cut(s) 1000, 1669, 2338, 3022
EcoRV GATATC 5 cut(s) 550, 1219, 1888, 2557, 3241
EcoT14I CCWWGG 3 cut(s) 315, 498, 2895
EgeI GGCGCC 2 cut(s) 1794, 2463
EheI GGCGCC 2 cut(s) 1794, 2463
ErhI CCWWGG 3 cut(s) 315, 498, 2895
FaeI CATG 9 cut(s) 57, 309, 319, 502, 987, 1656, 2325, 2899, 3009
FaqI GGGAC 1 cut(s) 346
FatI CATG 9 cut(s) 53, 305, 315, 498, 983, 1652, 2321, 2895, 3005
FauNDI CATATG 4 cut(s) 1036, 1705, 2374, 3058
FokI GGATG 5 cut(s) 481, 1090, 1759, 2428, 3112
FspBI CTAG 6 cut(s) 594, 1143, 1263, 1932, 2601, 3285
GlaI GCGC 3 cut(s) 30, 1794, 2463
GsaI CCCAGC 4 cut(s) 1088, 1757, 2426, 3110
HaeII RGCGCY 3 cut(s) 32, 1796, 2465
HaeIII GGCC 9 cut(s) 58, 220, 611, 850, 1280, 1519, 1949, 2188, 2618
HgaI GACGC 1 cut(s) 501
HhaI GCGC 3 cut(s) 31, 1795, 2464
Hin1I GRCGYC 2 cut(s) 1793, 2462
Hin1II CATG 9 cut(s) 57, 309, 319, 502, 987, 1656, 2325, 2899, 3009
Hin6I GCGC 3 cut(s) 29, 1793, 2462
HinP1I GCGC 3 cut(s) 29, 1793, 2462
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HinfI GANTC 5 cut(s) 359, 928, 1597, 2266, 2950
HphI GGTGA 6 cut(s) 265, 791, 1460, 2129, 2813, 3497
Hpy188I TCNGA 6 cut(s) 388, 702, 1371, 2040, 2709, 3393
HpyCH4IV ACGT 1 cut(s) 143
HpyF3I CTNAG 5 cut(s) 387, 837, 1506, 2175, 2859
HpySE526I ACGT 1 cut(s) 143
Hsp92I GRCGYC 2 cut(s) 1793, 2462
Hsp92II CATG 9 cut(s) 57, 309, 319, 502, 987, 1656, 2325, 2899, 3009
HspAI GCGC 3 cut(s) 29, 1793, 2462
KasI GGCGCC 2 cut(s) 1792, 2461
LmnI GCTCC 3 cut(s) 36, 201, 1762
LweI GCATC 6 cut(s) 246, 745, 1414, 2083, 2767, 3451
MaeI CTAG 6 cut(s) 594, 1143, 1263, 1932, 2601, 3285
MaeII ACGT 1 cut(s) 143
MfeI CAATTG 1 cut(s) 3363
MflI RGATCY 8 cut(s) 319, 832, 919, 1501, 1588, 2170, 2257, 2941
MhlI GDGCHC 3 cut(s) 964, 1633, 2302
MlsI TGGCCA 1 cut(s) 220
MluNI TGGCCA 1 cut(s) 220
Mly113I GGCGCC 2 cut(s) 1793, 2462
MlyI GAGTC 5 cut(s) 368, 922, 1591, 2260, 2944
MmeI TCCRAC 6 cut(s) 883, 1552, 1784, 2221, 2905, 3479
Mox20I TGGCCA 1 cut(s) 220
MroXI GAANNNNTTC 4 cut(s) 1135, 1804, 2473, 3157
MscI TGGCCA 1 cut(s) 220
MslI CAYNNNNRTG 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 220
MunI CAATTG 1 cut(s) 3363
NarI GGCGCC 2 cut(s) 1793, 2462
NcoI CCATGG 3 cut(s) 315, 498, 2895
NdeI CATATG 4 cut(s) 1036, 1705, 2374, 3058
NlaIII CATG 9 cut(s) 57, 309, 319, 502, 987, 1656, 2325, 2899, 3009
NlaIV GGNNCC 9 cut(s) 209, 274, 321, 1058, 1125, 1794, 2463, 3080, 3147
NmeAIII GCCGAG 4 cut(s) 637, 1306, 1975, 2644
NspI RCATGY 4 cut(s) 987, 1656, 2325, 3009
NspV TTCGAA 3 cut(s) 1184, 2522, 3344
PaqCI CACCTGC 4 cut(s) 1017, 1686, 2355, 3039
PciI ACATGT 4 cut(s) 983, 1652, 2321, 3005
PdmI GAANNNNTTC 4 cut(s) 1135, 1804, 2473, 3157
PleI GAGTC 5 cut(s) 367, 922, 1591, 2260, 2944
PluTI GGCGCC 2 cut(s) 1796, 2465
PpsI GAGTC 5 cut(s) 367, 922, 1591, 2260, 2944
Ppu21I YACGTR 1 cut(s) 144
PscI ACATGT 4 cut(s) 983, 1652, 2321, 3005
PshAI GACNNNNGTC 2 cut(s) 2750, 3434
PspFI CCCAGC 4 cut(s) 1084, 1753, 2422, 3106
PspN4I GGNNCC 9 cut(s) 209, 274, 321, 1058, 1125, 1794, 2463, 3080, 3147
PspPI GGNCC 5 cut(s) 416, 738, 2076, 2745, 3429
PstI CTGCAG 3 cut(s) 871, 1540, 2209
PstNI CAGNNNCTG 1 cut(s) 811
PsuI RGATCY 8 cut(s) 319, 832, 919, 1501, 1588, 2170, 2257, 2941
RsaI GTAC 3 cut(s) 540, 2983, 3504
RsaNI GTAC 3 cut(s) 539, 2982, 3503
RseI CAYNNNNRTG 1 cut(s) 267
Sau96I GGNCC 5 cut(s) 416, 738, 2076, 2745, 3429
SchI GAGTC 5 cut(s) 368, 922, 1591, 2260, 2944
SduI GDGCHC 3 cut(s) 964, 1633, 2302
SfaNI GCATC 6 cut(s) 246, 745, 1414, 2083, 2767, 3451
SfcI CTRYAG 3 cut(s) 867, 1536, 2205
SfoI GGCGCC 2 cut(s) 1794, 2463
SfuI TTCGAA 3 cut(s) 1184, 2522, 3344
SinI GGWCC 5 cut(s) 416, 738, 2076, 2745, 3429
SmiMI CAYNNNNRTG 1 cut(s) 267
SsiI CCGC 3 cut(s) 352, 2759, 3443
SspDI GGCGCC 2 cut(s) 1792, 2461
SspMI CTAG 6 cut(s) 594, 1143, 1263, 1932, 2601, 3285
StyI CCWWGG 3 cut(s) 315, 498, 2895
TaiI ACGT 1 cut(s) 146
TaqI TCGA 5 cut(s) 105, 468, 1184, 2522, 3344
TatI WGTACW 1 cut(s) 538
VpaK11BI GGWCC 5 cut(s) 416, 738, 2076, 2745, 3429
XceI RCATGY 4 cut(s) 987, 1656, 2325, 3009
XmnI GAANNNNTTC 4 cut(s) 1135, 1804, 2473, 3157
XspI CTAG 6 cut(s) 594, 1143, 1263, 1932, 2601, 3285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.