Prupe.8G229300_v2.0.a1

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000440
Physical Location & Seq
Forward (+)
20513526 .. 20516664
3139 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G229300.7

Sequence Viewer

Length: 1311 bp
ATGGAACAAAAGTTCCTCGCTGTACGGACAGGTCTTGCTTCTTCACAAGGTCTTGTCCAAAGTCTTTCAAGTTCCGATTTCAGAGCTGAGGACAACGACAAGGAAAACGATACGAAGAAGCTGAAGCTGAAGATGGGCTTCGTGGGTCTTGTTGAATTTGCCTTTCAGTGCTTTGATGTTCTTGCATGCCCTCTACTTGCTCTGCTGTATCCTCTATGTTGTTCCATTAGGGCGATTGAGGCCAATTCTATTTCAGATTCTCAGAGGTTGAATGCTTATTGGGTTGTCTTCTCATTGATTTTGCTCTTTGAACATGCATTTATGAAGTTCCTTGAATGGCTCCCACTGTGGCCGCACATTAGGCTAATGATTGTCTTCTGGTTGCTGATACCTCAATATGGTGGTGCATTTTATGTCTATAACCACCTTATCCGTCCATGCCTCTCCGTGGACCTACAAATTGTTATCAACTGGTTTAACAAGCGGAAGAAGTCCTCGTTTGACAGAGACAATTTTCTTGCCGAGGTGGAGAGATATGTAAAGGAGAACGGACCTGAAGCGCTGGAAAATATTGTTGCTTCCACATCTGAGAAAACAAAGTCAAGTCCCGATGCGAAAGAGTTCAAAGCAGTTTCTCTGGATAATAAAGAGAAGACACCTTTTGAAGGTGCTTATGGACTTAAGCCTCAAAATGTTCTTGACTTAGTTCCACTTCCAGAAGAGATGAAGATGAGTGATGATGGAGAGGGTTTGGCGGACCAAGTGAAAAGAGTGCACGAAGAAGTGAGGGCAGTAATAAAGGCTAGTTCTGCAGACAATCAACACCGAAGAGTCAAAGATTTTGAAGAAGGTGACATGGTTTGGGTGCATTTGAAGAAGGAAAGATTTCCAAAAGACACATACCATAAATTGAAGTCCAAGATGTTTGGGCCATATAAGGTGTTGAAGAAAATGAGCTCAATCGCTTACATGATAGAGCTGCCACCGGATCTCCAGATTAGCCCATATTTCAATGTGTTTGATTTGTATTTGTTTGAGGGATTTGATGAAGAAACAATTTCAAAGGAGGCACAACCATATATTGTTGAGGATGTGTTGGATGTCAAAGAGGTGACGTCAAAGAAGGGTAACCAATATAGGCGGTTCTTAGTGAAATGGTTGGGTAAGAATGCTACTGAGAATACTTGGATTGCTGAATATGATTTAAAGAGGATTGTTGCAGAGAGATATGCTGAAGTTGTTAAAGCTTTCTCGCCAGAGTCGACTTCTTCCCAACCTGGTGGAGTTGATGCAGGATCATCTGTTCGTTAG

Protein Analysis

437

Amino Acids

50.04

Weight (kDa)

6.09

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1118
AccI GTMKAC 1 cut(s) 1262
AciI CCGC 4 cut(s) 353, 484, 755, 1141
AclWI GGATC 2 cut(s) 996, 1303
AcoI YGGCCR 1 cut(s) 350
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 4 cut(s) 143, 149, 576, 1254
AcyI GRCGYC 1 cut(s) 1115
AfaI GTAC 1 cut(s) 24
AfeI AGCGCT 1 cut(s) 561
AfiI CCNNNNNNNGG 3 cut(s) 398, 448, 665
AflII CTTAAG 1 cut(s) 680
AjnI CCWGG 1 cut(s) 1276
AloI GAACNNNNNNTCC 3 cut(s) 28, 29, 1287
AluBI AGCT 6 cut(s) 86, 121, 127, 957, 979, 1247
AluI AGCT 6 cut(s) 86, 121, 127, 957, 979, 1247
Alw21I GWGCWC 2 cut(s) 777, 959
Alw26I GTCTC 1 cut(s) 501
Alw44I GTGCAC 1 cut(s) 773
AlwI GGATC 2 cut(s) 996, 1303
Aor51HI AGCGCT 1 cut(s) 561
AoxI GGCC 3 cut(s) 240, 350, 929
ApaLI GTGCAC 1 cut(s) 773
ApeKI GCWGC 1 cut(s) 979
ApoI RAATTY 1 cut(s) 155
Asp700I GAANNNNTTC 2 cut(s) 620, 885
AspLEI GCGC 1 cut(s) 562
AspS9I GGNCC 4 cut(s) 451, 551, 757, 929
AsuHPI GGTGA 2 cut(s) 863, 1123
AvaII GGWCC 3 cut(s) 451, 551, 757
BaeGI GKGCMC 1 cut(s) 777
BanII GRGCYC 1 cut(s) 959
BbsI GAAGAC 3 cut(s) 280, 367, 659
Bbv12I GWGCWC 2 cut(s) 777, 959
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 966
BccI CCATC 2 cut(s) 127, 734
BciT130I CCWGG 1 cut(s) 1278
BciVI GTATCC 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 1 cut(s) 804
BfmI CTRYAG 1 cut(s) 810
BfoI RGCGCY 1 cut(s) 563
BfrI CTTAAG 1 cut(s) 680
BfuI GTATCC 1 cut(s) 219
BisI GCNGC 2 cut(s) 353, 980
BlsI GCNGC 2 cut(s) 354, 981
Bme1390I CCNGG 1 cut(s) 1278
Bme18I GGWCC 3 cut(s) 451, 551, 757
BmgT120I GGNCC 4 cut(s) 451, 551, 757, 929
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 1278
BmsI GCATC 2 cut(s) 601, 1279
BpiI GAAGAC 3 cut(s) 280, 367, 659
BpmI CTGGAG 1 cut(s) 977
Bpu10I CCTNAGC 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 1115
BsaJI CCNNGG 2 cut(s) 447, 522
BsaWI WCCGGW 1 cut(s) 985
BsaXI ACNNNNNCTCC 2 cut(s) 975, 1005
Bsc4I CCNNNNNNNGG 3 cut(s) 398, 448, 665
Bse1I ACTGG 1 cut(s) 476
BseBI CCWGG 1 cut(s) 1278
BseDI CCNNGG 2 cut(s) 447, 522
BseGI GGATG 2 cut(s) 1096, 1105
BseLI CCNNNNNNNGG 3 cut(s) 398, 448, 665
BseMII CTCAG 4 cut(s) 78, 275, 579, 1167
BseNI ACTGG 1 cut(s) 476
BseSI GKGCMC 1 cut(s) 777
BseXI GCAGC 1 cut(s) 966
BshFI GGCC 3 cut(s) 242, 352, 931
BsiHKAI GWGCWC 2 cut(s) 777, 959
BsiSI CCGG 1 cut(s) 986
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 3 cut(s) 398, 448, 665
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 591
BsmI GAATGC 2 cut(s) 277, 1174
BsnI GGCC 3 cut(s) 242, 352, 931
Bsp1286I GDGCHC 2 cut(s) 777, 959
Bsp143I GATC 2 cut(s) 988, 1295
BspACI CCGC 4 cut(s) 353, 484, 755, 1141
BspANI GGCC 3 cut(s) 242, 352, 931
BspCNI CTCAG 4 cut(s) 79, 274, 580, 1168
BspLI GGNNCC 1 cut(s) 341
BspMAI CTGCAG 1 cut(s) 814
BspPI GGATC 2 cut(s) 996, 1303
BspTI CTTAAG 1 cut(s) 680
BsrI ACTGG 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 447, 522
BssMI GATC 2 cut(s) 988, 1295
BssNI GRCGYC 1 cut(s) 1115
Bst2UI CCWGG 1 cut(s) 1278
Bst4CI ACNGT 1 cut(s) 348
Bst6I CTCTTC 2 cut(s) 714, 823
BstACI GRCGYC 1 cut(s) 1115
BstAFI CTTAAG 1 cut(s) 680
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 6 cut(s) 87, 261, 588, 703, 1147, 1176
BstDSI CCRYGG 1 cut(s) 447
BstEII GGTNACC 1 cut(s) 1127
BstENI CCTNNNNNAGG 1 cut(s) 663
BstF5I GGATG 2 cut(s) 1096, 1105
BstH2I RGCGCY 1 cut(s) 563
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 2 cut(s) 991, 1298
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 2 cut(s) 988, 1295
BstMWI GCNNNNNNNGC 3 cut(s) 239, 361, 809
BstNI CCWGG 1 cut(s) 1278
BstNSI RCATGY 2 cut(s) 189, 317
BstPI GGTNACC 1 cut(s) 1127
BstSCI CCNGG 1 cut(s) 1276
BstSFI CTRYAG 1 cut(s) 810
BstSLI GKGCMC 1 cut(s) 777
BstV1I GCAGC 1 cut(s) 966
BstV2I GAAGAC 3 cut(s) 280, 367, 659
BstX2I RGATCY 1 cut(s) 988
BstXI CCANNNNNNTGG 1 cut(s) 1280
BstYI RGATCY 1 cut(s) 988
BsuI GTATCC 1 cut(s) 219
BsuRI GGCC 3 cut(s) 242, 352, 931
BtgI CCRYGG 1 cut(s) 447
BtsCI GGATG 2 cut(s) 1096, 1105
BtsIMutI CAGTG 2 cut(s) 173, 344
Cac8I GCNNGC 1 cut(s) 187
CfoI GCGC 1 cut(s) 562
Cfr13I GGNCC 4 cut(s) 451, 551, 757, 929
CsiI ACCWGGT 1 cut(s) 1276
Csp6I GTAC 1 cut(s) 23
CviAII CATG 5 cut(s) 186, 314, 438, 856, 970
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 6 cut(s) 87, 261, 588, 703, 1147, 1176
DpnI GATC 2 cut(s) 990, 1297
DpnII GATC 2 cut(s) 988, 1295
DraI TTTAAA 1 cut(s) 1206
EaeI YGGCCR 1 cut(s) 350
Eam1104I CTCTTC 2 cut(s) 714, 823
EarI CTCTTC 2 cut(s) 714, 823
EciI GGCGGA 1 cut(s) 770
Ecl136II GAGCTC 1 cut(s) 957
Eco24I GRGCYC 1 cut(s) 959
Eco47I GGWCC 3 cut(s) 451, 551, 757
Eco47III AGCGCT 1 cut(s) 561
Eco53kI GAGCTC 1 cut(s) 957
Eco57I CTGAAG 4 cut(s) 143, 149, 576, 1254
Eco91I GGTNACC 1 cut(s) 1127
EcoICRI GAGCTC 1 cut(s) 957
EcoNI CCTNNNNNAGG 1 cut(s) 663
EcoO65I GGTNACC 1 cut(s) 1127
EcoRII CCWGG 1 cut(s) 1276
EcoT22I ATGCAT 1 cut(s) 319
EcoT38I GRGCYC 1 cut(s) 959
FaeI CATG 5 cut(s) 189, 317, 441, 859, 973
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 1 cut(s) 591
FatI CATG 5 cut(s) 185, 313, 437, 855, 969
FblI GTMKAC 1 cut(s) 1262
Fnu4HI GCNGC 2 cut(s) 353, 980
FokI GGATG 2 cut(s) 1103, 1112
FriOI GRGCYC 1 cut(s) 959
Fsp4HI GCNGC 2 cut(s) 353, 980
FspBI CTAG 1 cut(s) 804
GlaI GCGC 1 cut(s) 561
GluI GCNGC 2 cut(s) 353, 980
GsuI CTGGAG 1 cut(s) 977
HaeII RGCGCY 1 cut(s) 563
HaeIII GGCC 3 cut(s) 242, 352, 931
HapII CCGG 1 cut(s) 986
HhaI GCGC 1 cut(s) 562
Hin1I GRCGYC 1 cut(s) 1115
Hin1II CATG 5 cut(s) 189, 317, 441, 859, 973
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HincII GTYRAC 1 cut(s) 1263
HindII GTYRAC 1 cut(s) 1263
HindIII AAGCTT 1 cut(s) 1245
HinfI GANTC 3 cut(s) 257, 831, 1259
HpaII CCGG 1 cut(s) 986
HphI GGTGA 2 cut(s) 863, 1123
Hpy166II GTNNAC 3 cut(s) 451, 775, 1263
Hpy188I TCNGA 5 cut(s) 76, 83, 256, 264, 589
Hpy188III TCNNGA 5 cut(s) 608, 638, 698, 716, 994
Hpy8I GTNNAC 3 cut(s) 451, 775, 1263
HpyAV CCTTC 4 cut(s) 659, 842, 871, 1117
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4IV ACGT 1 cut(s) 1115
HpyCH4V TGCA 8 cut(s) 185, 317, 407, 775, 812, 868, 1220, 1292
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 361, 809
HpyF3I CTNAG 6 cut(s) 87, 261, 588, 703, 1147, 1176
HpySE526I ACGT 1 cut(s) 1115
Hsp92I GRCGYC 1 cut(s) 1115
Hsp92II CATG 5 cut(s) 189, 317, 441, 859, 973
HspAI GCGC 1 cut(s) 560
Kzo9I GATC 2 cut(s) 988, 1295
LmnI GCTCC 1 cut(s) 345
Lsp1109I GCAGC 1 cut(s) 966
LweI GCATC 2 cut(s) 601, 1279
MabI ACCWGGT 1 cut(s) 1276
MaeI CTAG 1 cut(s) 804
MaeII ACGT 1 cut(s) 1115
MaeIII GTNAC 3 cut(s) 851, 1111, 1127
MalI GATC 2 cut(s) 990, 1297
MboI GATC 2 cut(s) 988, 1295
MflI RGATCY 1 cut(s) 988
MhlI GDGCHC 2 cut(s) 777, 959
MluCI AATT 6 cut(s) 155, 244, 459, 511, 908, 1056
MlyI GAGTC 2 cut(s) 840, 1268
MmeI TCCRAC 1 cut(s) 1077
Mph1103I ATGCAT 1 cut(s) 319
MroXI GAANNNNTTC 2 cut(s) 620, 885
MseI TTAA 4 cut(s) 477, 681, 1205, 1242
MspCI CTTAAG 1 cut(s) 680
MspI CCGG 1 cut(s) 986
MspR9I CCNGG 1 cut(s) 1278
Mva1269I GAATGC 2 cut(s) 277, 1174
MvaI CCWGG 1 cut(s) 1278
MwoI GCNNNNNNNGC 3 cut(s) 239, 361, 809
NdeII GATC 2 cut(s) 988, 1295
NlaIII CATG 5 cut(s) 189, 317, 441, 859, 973
NlaIV GGNNCC 1 cut(s) 341
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 2 cut(s) 851, 1111
NsiI ATGCAT 1 cut(s) 319
NspI RCATGY 2 cut(s) 189, 317
PaeI GCATGC 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 1259
PctI GAATGC 2 cut(s) 277, 1174
PdmI GAANNNNTTC 2 cut(s) 620, 885
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 354, 981
PleI GAGTC 2 cut(s) 839, 1267
PpsI GAGTC 2 cut(s) 839, 1267
Psp124BI GAGCTC 1 cut(s) 959
Psp6I CCWGG 1 cut(s) 1276
PspEI GGTNACC 1 cut(s) 1127
PspGI CCWGG 1 cut(s) 1276
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 4 cut(s) 451, 551, 757, 929
PstI CTGCAG 1 cut(s) 814
PsuI RGATCY 1 cut(s) 988
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SacI GAGCTC 1 cut(s) 959
SalI GTCGAC 1 cut(s) 1261
SaqAI TTAA 4 cut(s) 477, 681, 1205, 1242
SatI GCNGC 2 cut(s) 353, 980
Sau3AI GATC 2 cut(s) 988, 1295
Sau96I GGNCC 4 cut(s) 451, 551, 757, 929
SchI GAGTC 2 cut(s) 840, 1268
ScrFI CCNGG 1 cut(s) 1278
SduI GDGCHC 2 cut(s) 777, 959
SexAI ACCWGGT 1 cut(s) 1276
SfaNI GCATC 2 cut(s) 601, 1279
SfcI CTRYAG 1 cut(s) 810
SinI GGWCC 3 cut(s) 451, 551, 757
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
SphI GCATGC 1 cut(s) 189
Sse9I AATT 6 cut(s) 155, 244, 459, 511, 908, 1056
SsiI CCGC 4 cut(s) 353, 484, 755, 1141
SspI AATATT 1 cut(s) 571
SspMI CTAG 1 cut(s) 804
SstI GAGCTC 1 cut(s) 959
StyD4I CCNGG 1 cut(s) 1276
TaaI ACNGT 1 cut(s) 348
TaiI ACGT 1 cut(s) 1118
TaqI TCGA 1 cut(s) 1262
TasI AATT 6 cut(s) 155, 244, 459, 511, 908, 1056
TauI GCSGC 1 cut(s) 355
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 4 cut(s) 477, 681, 1205, 1242
Tru9I TTAA 4 cut(s) 477, 681, 1205, 1242
TscAI CASTG 2 cut(s) 173, 351
TseFI GTSAC 2 cut(s) 851, 1111
TseI GCWGC 1 cut(s) 979
Tsp45I GTSAC 2 cut(s) 851, 1111
TspDTI ATGAA 3 cut(s) 338, 740, 1062
TspGWI ACGGA 4 cut(s) 40, 422, 436, 564
TspRI CASTG 2 cut(s) 173, 351
Vha464I CTTAAG 1 cut(s) 680
VneI GTGCAC 1 cut(s) 773
VpaK11BI GGWCC 3 cut(s) 451, 551, 757
XagI CCTNNNNNAGG 1 cut(s) 663
XapI RAATTY 1 cut(s) 155
XceI RCATGY 2 cut(s) 189, 317
XmiI GTMKAC 1 cut(s) 1262
XmnI GAANNNNTTC 2 cut(s) 620, 885
XspI CTAG 1 cut(s) 804
ZraI GACGTC 1 cut(s) 1116
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.