Rh6CG171900

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000440
Physical Location & Seq
Reverse (-)
23894321 .. 23896532
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG171900.1

Sequence Viewer

Length: 957 bp
ATGTGGGAAAATCTTATAACTGCATTGTTGGTTATAAATATGTCCACGGTCGGTCAGGCAGAGCCTAATCTCACTGTGAATGAAGATAAAATTTCTTCTACGAAGATGAATGAAAAAGCCATTGAGGGTGCAGCTGATAGAGAAATTCTGAAGACACCACCTCCAAAGAAAGTTCAGAAGGAGTGGACCACAGTCAGTCCGCTACAAACTCAAACTGATGCAACTTTGAGTTCCCCTCCTGGTGATAATAAAGACAAGGCTACATACGAGGCGCTGAAGATAAAGAATGAGGCAGAGCCTAAGCTCACTTGGCCTGAAAACCGTGCTGTTGTAGCCATGGAAATATATGAAAAGCTGGTTGAGGTTGGAATAGGTATAGAAGATCCAGAGACTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCTAGTAACCACTACATGTGAAAGCAATTTGAATTCCCATTTGCAAGGGCGAAAACACAAGGCAGCATATGAGGCAGTGAAAGTAAGGAACCAGGCATTTTTGCCCAACATTGCCGCAACTTCAACCGCAAAAAGATCCAATCAGCCAAATAAGGCGCCGGGAAAGAGTTTCCCGAGCAGTCGATCAAAACCAAAAGTTCCTATGAATGAAAATTCAAAATCCATAAAGGCAAATGGTGGACAGAATGATATCAAAGTTGTGCAGATAACGGCAAAAAAAAAGTCCAGAAGGAGTGGGACCACCGTCAGTCTGCTACCAACTCAAACTGATGCAACTTTTAGTTCCCCTCTTGGTGATAATGAACACAAGGCTACATATGAGGGGCTGAAGATAAAGAATGAGGCAGAGCCGAAGCTCACTCGGCCTGAAAACCATACTGTTGCAGCCATGGAAATATATGAAAAGCTGGTTCAGGTTGGAACAGGTATAGAAGATCTAGAGGCTCCTAAAGAAGTCCAGAAATAG

Protein Analysis

318

Amino Acids

34.97

Weight (kDa)

8.71

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 139 - 163 5.3e-09 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 17, 35
AccB1I GGYRCC 1 cut(s) 586
AciI CCGC 3 cut(s) 200, 546, 558
AclWI GGATC 2 cut(s) 377, 561
AcsI RAATTY 4 cut(s) 90, 144, 463, 643
AcuI CTGAAG 3 cut(s) 170, 296, 839
AcyI GRCGYC 1 cut(s) 587
AflIII ACRYGT 1 cut(s) 446
AgsI TTSAA 3 cut(s) 463, 555, 648
AjnI CCWGG 2 cut(s) 238, 522
AluBI AGCT 5 cut(s) 134, 304, 355, 847, 898
AluI AGCT 5 cut(s) 134, 304, 355, 847, 898
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 2 cut(s) 377, 561
Ama87I CYCGRG 1 cut(s) 604
AoxI GGCC 2 cut(s) 311, 854
ApeKI GCWGC 3 cut(s) 131, 494, 875
ApoI RAATTY 4 cut(s) 90, 144, 463, 643
ArsI GACNNNNNNTTYG 2 cut(s) 698, 730
AspLEI GCGC 2 cut(s) 274, 589
AspS9I GGNCC 2 cut(s) 186, 729
AsuC2I CCSGG 1 cut(s) 591
AsuHPI GGTGA 2 cut(s) 254, 797
AvaI CYCGRG 1 cut(s) 604
AvaII GGWCC 2 cut(s) 186, 729
BanI GGYRCC 1 cut(s) 586
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 3 cut(s) 143, 506, 887
BceAI ACGGC 1 cut(s) 717
BciT130I CCWGG 2 cut(s) 240, 524
BcnI CCSGG 1 cut(s) 591
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 2 cut(s) 434, 929
BfoI RGCGCY 2 cut(s) 275, 590
BglII AGATCT 1 cut(s) 925
BisI GCNGC 4 cut(s) 132, 495, 546, 876
BlsI GCNGC 4 cut(s) 133, 496, 547, 877
Bme1390I CCNGG 3 cut(s) 240, 524, 591
Bme18I GGWCC 2 cut(s) 186, 729
BmeT110I CYCGRG 1 cut(s) 604
BmgT120I GGNCC 2 cut(s) 186, 729
BmiI GGNNCC 4 cut(s) 521, 588, 730, 936
BmrFI CCNGG 3 cut(s) 240, 524, 591
BmsI GCATC 2 cut(s) 208, 751
BoxI GACNNNNGTC 2 cut(s) 191, 734
BpiI GAAGAC 1 cut(s) 158
BplI GAGNNNNNCTC 2 cut(s) 220, 252
Bpu10I CCTNAGC 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 591
BsaHI GRCGYC 1 cut(s) 587
BsaJI CCNNGG 3 cut(s) 45, 336, 879
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bse3DI GCAATG 1 cut(s) 540
BseBI CCWGG 2 cut(s) 240, 524
BseDI CCNNGG 3 cut(s) 45, 336, 879
BseMI GCAATG 1 cut(s) 540
BseXI GCAGC 3 cut(s) 143, 506, 887
BsgI GTGCAG 2 cut(s) 150, 713
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 313, 856
BshNI GGYRCC 1 cut(s) 586
BsiEI CGRYCG 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 427
BsiHKCI CYCGRG 1 cut(s) 604
BsiSI CCGG 1 cut(s) 590
BslFI GGGAC 1 cut(s) 742
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 742
BsnI GGCC 2 cut(s) 313, 856
BsoBI CYCGRG 1 cut(s) 604
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 4 cut(s) 382, 566, 614, 925
Bsp19I CCATGG 2 cut(s) 336, 879
BspACI CCGC 3 cut(s) 200, 546, 558
BspANI GGCC 2 cut(s) 313, 856
BspLI GGNNCC 4 cut(s) 521, 588, 730, 936
BspPI GGATC 2 cut(s) 377, 561
BspT107I GGYRCC 1 cut(s) 586
BsrDI GCAATG 1 cut(s) 540
BssECI CCNNGG 3 cut(s) 45, 336, 879
BssMI GATC 4 cut(s) 382, 566, 614, 925
BssNI GRCGYC 1 cut(s) 587
BssT1I CCWWGG 2 cut(s) 336, 879
Bst2UI CCWGG 2 cut(s) 240, 524
Bst4CI ACNGT 6 cut(s) 49, 76, 193, 323, 736, 871
BstACI GRCGYC 1 cut(s) 587
BstDEI CTNAG 1 cut(s) 300
BstDSI CCRYGG 3 cut(s) 45, 336, 879
BstH2I RGCGCY 2 cut(s) 275, 590
BstHHI GCGC 2 cut(s) 274, 589
BstKTI GATC 4 cut(s) 385, 569, 617, 928
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 4 cut(s) 382, 566, 614, 925
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 4 cut(s) 310, 332, 503, 853
BstNI CCWGG 2 cut(s) 240, 524
BstNSI RCATGY 1 cut(s) 450
BstPAI GACNNNNGTC 2 cut(s) 191, 734
BstSCI CCNGG 3 cut(s) 238, 522, 589
BstV1I GCAGC 3 cut(s) 143, 506, 887
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 3 cut(s) 382, 566, 925
BstYI RGATCY 3 cut(s) 382, 566, 925
BsuRI GGCC 2 cut(s) 313, 856
BtgI CCRYGG 3 cut(s) 45, 336, 879
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 2 cut(s) 72, 513
CfoI GCGC 2 cut(s) 274, 589
Cfr13I GGNCC 2 cut(s) 186, 729
CviAII CATG 3 cut(s) 337, 447, 880
DdeI CTNAG 1 cut(s) 300
DinI GGCGCC 1 cut(s) 588
DpnI GATC 4 cut(s) 384, 568, 616, 927
DpnII GATC 4 cut(s) 382, 566, 614, 925
Eco130I CCWWGG 2 cut(s) 336, 879
Eco32I GATATC 1 cut(s) 682
Eco47I GGWCC 2 cut(s) 186, 729
Eco57I CTGAAG 3 cut(s) 170, 296, 839
Eco88I CYCGRG 1 cut(s) 604
EcoRI GAATTC 1 cut(s) 463
EcoRII CCWGG 2 cut(s) 238, 522
EcoRV GATATC 1 cut(s) 682
EcoT14I CCWWGG 2 cut(s) 336, 879
EgeI GGCGCC 1 cut(s) 588
EheI GGCGCC 1 cut(s) 588
ErhI CCWWGG 2 cut(s) 336, 879
FaeI CATG 3 cut(s) 340, 450, 883
FaqI GGGAC 1 cut(s) 742
FatI CATG 3 cut(s) 336, 446, 879
FauNDI CATATG 2 cut(s) 499, 808
Fnu4HI GCNGC 4 cut(s) 132, 495, 546, 876
Fsp4HI GCNGC 4 cut(s) 132, 495, 546, 876
FspBI CTAG 2 cut(s) 434, 929
GlaI GCGC 2 cut(s) 273, 588
GluI GCNGC 4 cut(s) 132, 495, 546, 876
HaeII RGCGCY 2 cut(s) 275, 590
HaeIII GGCC 2 cut(s) 313, 856
HapII CCGG 1 cut(s) 590
HhaI GCGC 2 cut(s) 274, 589
Hin1I GRCGYC 1 cut(s) 587
Hin1II CATG 3 cut(s) 340, 450, 883
Hin6I GCGC 2 cut(s) 272, 587
HinP1I GCGC 2 cut(s) 272, 587
HinfI GANTC 1 cut(s) 391
HpaII CCGG 1 cut(s) 590
HphI GGTGA 2 cut(s) 254, 797
Hpy166II GTNNAC 4 cut(s) 45, 186, 417, 671
Hpy188I TCNGA 2 cut(s) 150, 177
Hpy188III TCNNGA 6 cut(s) 386, 406, 604, 717, 929, 949
Hpy8I GTNNAC 4 cut(s) 45, 186, 417, 671
HpyAV CCTTC 2 cut(s) 172, 714
HpyCH4III ACNGT 6 cut(s) 49, 76, 193, 323, 736, 871
HpyCH4V TGCA 7 cut(s) 23, 131, 221, 475, 694, 764, 875
HpyF10VI GCNNNNNNNGC 4 cut(s) 310, 332, 503, 853
HpyF3I CTNAG 1 cut(s) 300
Hsp92I GRCGYC 1 cut(s) 587
Hsp92II CATG 3 cut(s) 340, 450, 883
HspAI GCGC 2 cut(s) 272, 587
KasI GGCGCC 1 cut(s) 586
Kzo9I GATC 4 cut(s) 382, 566, 614, 925
LmnI GCTCC 1 cut(s) 940
Lsp1109I GCAGC 3 cut(s) 143, 506, 887
LweI GCATC 2 cut(s) 208, 751
MaeI CTAG 2 cut(s) 434, 929
MaeIII GTNAC 1 cut(s) 436
MalI GATC 4 cut(s) 384, 568, 616, 927
MboI GATC 4 cut(s) 382, 566, 614, 925
MboII GAAGA 8 cut(s) 87, 95, 115, 163, 289, 392, 832, 935
MflI RGATCY 3 cut(s) 382, 566, 925
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 5 cut(s) 90, 144, 457, 463, 643
Mly113I GGCGCC 1 cut(s) 587
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 2 cut(s) 346, 889
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 1 cut(s) 590
MspR9I CCNGG 3 cut(s) 240, 524, 591
MvaI CCWGG 2 cut(s) 240, 524
MwoI GCNNNNNNNGC 4 cut(s) 310, 332, 503, 853
NarI GGCGCC 1 cut(s) 587
NciI CCSGG 1 cut(s) 591
NcoI CCATGG 2 cut(s) 336, 879
NdeI CATATG 2 cut(s) 499, 808
NdeII GATC 4 cut(s) 382, 566, 614, 925
NlaIII CATG 3 cut(s) 340, 450, 883
NlaIV GGNNCC 4 cut(s) 521, 588, 730, 936
NmeAIII GCCGAG 1 cut(s) 832
NspI RCATGY 1 cut(s) 450
PciI ACATGT 1 cut(s) 446
PkrI GCNGC 4 cut(s) 133, 496, 547, 877
PleI GAGTC 1 cut(s) 385
PluTI GGCGCC 1 cut(s) 590
PpsI GAGTC 1 cut(s) 385
PscI ACATGT 1 cut(s) 446
PshAI GACNNNNGTC 2 cut(s) 191, 734
PsiI TTATAA 2 cut(s) 17, 35
Psp6I CCWGG 2 cut(s) 238, 522
PspGI CCWGG 2 cut(s) 238, 522
PspN4I GGNNCC 4 cut(s) 521, 588, 730, 936
PspPI GGNCC 2 cut(s) 186, 729
PsuI RGATCY 3 cut(s) 382, 566, 925
PvuII CAGCTG 1 cut(s) 134
SatI GCNGC 4 cut(s) 132, 495, 546, 876
Sau3AI GATC 4 cut(s) 382, 566, 614, 925
Sau96I GGNCC 2 cut(s) 186, 729
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 3 cut(s) 240, 524, 591
SduI GDGCHC 1 cut(s) 427
SfaNI GCATC 2 cut(s) 208, 751
SfoI GGCGCC 1 cut(s) 588
SinI GGWCC 2 cut(s) 186, 729
Sse9I AATT 5 cut(s) 90, 144, 457, 463, 643
SsiI CCGC 3 cut(s) 200, 546, 558
SspDI GGCGCC 1 cut(s) 586
SspMI CTAG 2 cut(s) 434, 929
StyD4I CCNGG 3 cut(s) 238, 522, 589
StyI CCWWGG 2 cut(s) 336, 879
TaaI ACNGT 6 cut(s) 49, 76, 193, 323, 736, 871
TaqI TCGA 1 cut(s) 613
TaqII GACCGA 1 cut(s) 41
TasI AATT 5 cut(s) 90, 144, 457, 463, 643
TauI GCSGC 1 cut(s) 548
TscAI CASTG 2 cut(s) 79, 513
TseI GCWGC 3 cut(s) 131, 494, 875
TspDTI ATGAA 8 cut(s) 96, 122, 126, 363, 650, 654, 807, 906
TspRI CASTG 2 cut(s) 79, 513
VpaK11BI GGWCC 2 cut(s) 186, 729
XapI RAATTY 4 cut(s) 90, 144, 463, 643
XbaI TCTAGA 1 cut(s) 928
XceI RCATGY 1 cut(s) 450
XspI CTAG 2 cut(s) 434, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.