RchiOBHm_Chr6g0270181

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000440
Physical Location & Seq
Reverse (-)
27981960 .. 27983844
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24238

Sequence Viewer

Length: 735 bp
ATGGAAATATATGACAAGCCGGTTGAGGTTGGAACAGGTATAGAAGATCCAGAGACTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAAGTAACCACTACATGTGAAAGCAATTTGAGTTCGCACCTGCAAGGACGAAAACAGAAGTCAACATATGAGGCAGTGAAAGTAAGGAACCAGGCATTTTTATCCAAGATTGCCGCAGCTTCTACTGCAAAAACATCCAATCAGCCAAATAAGGTGCCAGGAAAGAGTTTCCCGAGCAGTGGATCAAAACCAAAAGTTCCTATGAATGAAAATTCAAAATCCATAAAGGCAAATGGTGGACAGAATGATATCAAAGTTGTGCAGGTGAATGAAAAAGGCATTGAGTTTGCAGCTGATGGAGAAACTATGAATGAGTGGACCACCGTCCGTCTGCTAACAACTCAAACTGATGCCATTTTTAGTTCCCCTCTTGGTGATAATAAACACAAGGCTACATACGAGGGGCTGAAGATAAAGAATGAGGCAGAGCCGAATCTCACTCGGCCTGAAAACCATACTGTTGCAGCCATGGAAATATATGAAAAGCTGGTTGAGGTTGGAACAGGTATAGAAGATCCAGAGGCTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAGTTGACTATATATGAAAACGATTTGAATTCCCACCTGCAGGGGAAAAACACCAGGCAGCATATGAGGCACTAA

Protein Analysis

244

Amino Acids

27.05

Weight (kDa)

6.12

Isoelectric Point (pI)

23.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 27 - 50 4.7e-08 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 144, 349, 705
Acc36I ACCTGC 3 cut(s) 144, 349, 705
AccB1I GGYRCC 1 cut(s) 250
AciI CCGC 1 cut(s) 210
AclWI GGATC 3 cut(s) 41, 286, 605
AcsI RAATTY 2 cut(s) 307, 688
AcuI CTGAAG 1 cut(s) 524
AfiI CCNNNNNNNGG 2 cut(s) 275, 700
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 2 cut(s) 312, 688
AjnI CCWGG 3 cut(s) 186, 253, 713
AluBI AGCT 3 cut(s) 215, 389, 583
AluI AGCT 3 cut(s) 215, 389, 583
Alw21I GWGCWC 2 cut(s) 91, 655
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 3 cut(s) 41, 286, 605
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 1 cut(s) 539
ApeKI GCWGC 4 cut(s) 212, 386, 560, 718
ApoI RAATTY 2 cut(s) 307, 688
AspS9I GGNCC 1 cut(s) 414
AsuHPI GGTGA 2 cut(s) 373, 482
AvaI CYCGRG 1 cut(s) 268
AvaII GGWCC 1 cut(s) 414
BanI GGYRCC 1 cut(s) 250
Bbv12I GWGCWC 2 cut(s) 91, 655
BbvI GCAGC 4 cut(s) 224, 398, 572, 730
BccI CCATC 1 cut(s) 386
BciT130I CCWGG 3 cut(s) 188, 255, 715
BcoDI GTCTC 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 698
BfuAI ACCTGC 3 cut(s) 144, 349, 705
BisI GCNGC 5 cut(s) 210, 213, 387, 561, 719
BlsI GCNGC 5 cut(s) 211, 214, 388, 562, 720
Bme1390I CCNGG 3 cut(s) 188, 255, 715
Bme18I GGWCC 1 cut(s) 414
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 3 cut(s) 185, 252, 621
BmrFI CCNGG 3 cut(s) 188, 255, 715
BmsI GCATC 1 cut(s) 436
BoxI GACNNNNGTC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 564
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 700
Bse118I RCCGGY 1 cut(s) 19
BseBI CCWGG 3 cut(s) 188, 255, 715
BseDI CCNNGG 1 cut(s) 564
BseGI GGATG 1 cut(s) 230
BseLI CCNNNNNNNGG 2 cut(s) 275, 700
BseXI GCAGC 4 cut(s) 224, 398, 572, 730
BsgI GTGCAG 1 cut(s) 377
BshFI GGCC 1 cut(s) 541
BshNI GGYRCC 1 cut(s) 250
BsiHKAI GWGCWC 2 cut(s) 91, 655
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 2 cut(s) 275, 700
BsmAI GTCTC 1 cut(s) 47
BsnI GGCC 1 cut(s) 541
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 2 cut(s) 91, 655
Bsp143I GATC 3 cut(s) 46, 278, 610
Bsp19I CCATGG 1 cut(s) 564
BspACI CCGC 1 cut(s) 210
BspANI GGCC 1 cut(s) 541
BspLI GGNNCC 3 cut(s) 185, 252, 621
BspMAI CTGCAG 1 cut(s) 702
BspMI ACCTGC 3 cut(s) 144, 349, 705
BspPI GGATC 3 cut(s) 41, 286, 605
BspT107I GGYRCC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 564
BssMI GATC 3 cut(s) 46, 278, 610
BssT1I CCWWGG 1 cut(s) 564
Bst2UI CCWGG 3 cut(s) 188, 255, 715
Bst4CI ACNGT 2 cut(s) 421, 556
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 1 cut(s) 230
BstKTI GATC 3 cut(s) 49, 281, 613
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 3 cut(s) 46, 278, 610
BstMWI GCNNNNNNNGC 2 cut(s) 221, 727
BstNI CCWGG 3 cut(s) 188, 255, 715
BstNSI RCATGY 1 cut(s) 114
BstPAI GACNNNNGTC 1 cut(s) 419
BstSCI CCNGG 3 cut(s) 186, 253, 713
BstSFI CTRYAG 1 cut(s) 698
BstV1I GCAGC 4 cut(s) 224, 398, 572, 730
BstX2I RGATCY 2 cut(s) 46, 610
BstYI RGATCY 2 cut(s) 46, 610
BsuRI GGCC 1 cut(s) 541
BtgI CCRYGG 1 cut(s) 564
BtsCI GGATG 1 cut(s) 230
BtsI GCAGTG 2 cut(s) 177, 280
BtsIMutI CAGTG 2 cut(s) 177, 280
BveI ACCTGC 3 cut(s) 144, 349, 705
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 414
CviAII CATG 2 cut(s) 111, 565
DpnI GATC 3 cut(s) 48, 280, 612
DpnII GATC 3 cut(s) 46, 278, 610
Eco130I CCWWGG 1 cut(s) 564
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 414
Eco57I CTGAAG 1 cut(s) 524
Eco88I CYCGRG 1 cut(s) 268
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 3 cut(s) 186, 253, 713
EcoRV GATATC 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 2 cut(s) 114, 568
FatI CATG 2 cut(s) 110, 564
FauNDI CATATG 2 cut(s) 163, 723
Fnu4HI GCNGC 5 cut(s) 210, 213, 387, 561, 719
FokI GGATG 1 cut(s) 217
Fsp4HI GCNGC 5 cut(s) 210, 213, 387, 561, 719
GluI GCNGC 5 cut(s) 210, 213, 387, 561, 719
HaeIII GGCC 1 cut(s) 541
HapII CCGG 1 cut(s) 20
Hin1II CATG 2 cut(s) 114, 568
HincII GTYRAC 2 cut(s) 159, 666
HindII GTYRAC 2 cut(s) 159, 666
HinfI GANTC 2 cut(s) 55, 529
HpaII CCGG 1 cut(s) 20
HphI GGTGA 2 cut(s) 373, 482
Hpy166II GTNNAC 6 cut(s) 81, 159, 335, 414, 645, 666
Hpy188III TCNNGA 5 cut(s) 50, 70, 268, 614, 634
Hpy8I GTNNAC 6 cut(s) 81, 159, 335, 414, 645, 666
HpyCH4III ACNGT 2 cut(s) 421, 556
HpyCH4V TGCA 6 cut(s) 139, 224, 358, 386, 560, 700
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 727
Hsp92II CATG 2 cut(s) 114, 568
Kzo9I GATC 3 cut(s) 46, 278, 610
LmnI GCTCC 1 cut(s) 625
Lsp1109I GCAGC 4 cut(s) 224, 398, 572, 730
LweI GCATC 1 cut(s) 436
MaeIII GTNAC 1 cut(s) 100
MalI GATC 3 cut(s) 48, 280, 612
MboI GATC 3 cut(s) 46, 278, 610
MboII GAAGA 3 cut(s) 56, 517, 620
MflI RGATCY 2 cut(s) 46, 610
MhlI GDGCHC 2 cut(s) 91, 655
MluCI AATT 3 cut(s) 121, 307, 688
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 2 cut(s) 10, 574
MnlI CCTC 8 cut(s) 19, 160, 474, 490, 511, 583, 610, 720
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 3 cut(s) 188, 255, 715
MvaI CCWGG 3 cut(s) 188, 255, 715
MwoI GCNNNNNNNGC 2 cut(s) 221, 727
NcoI CCATGG 1 cut(s) 564
NdeI CATATG 2 cut(s) 163, 723
NdeII GATC 3 cut(s) 46, 278, 610
NlaIII CATG 2 cut(s) 114, 568
NlaIV GGNNCC 3 cut(s) 185, 252, 621
NmeAIII GCCGAG 1 cut(s) 517
NspI RCATGY 1 cut(s) 114
PaqCI CACCTGC 3 cut(s) 144, 349, 705
PciI ACATGT 1 cut(s) 110
PfeI GAWTC 1 cut(s) 529
PkrI GCNGC 5 cut(s) 211, 214, 388, 562, 720
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PscI ACATGT 1 cut(s) 110
PshAI GACNNNNGTC 1 cut(s) 419
Psp6I CCWGG 3 cut(s) 186, 253, 713
PspGI CCWGG 3 cut(s) 186, 253, 713
PspN4I GGNNCC 3 cut(s) 185, 252, 621
PspPI GGNCC 1 cut(s) 414
PstI CTGCAG 1 cut(s) 702
PsuI RGATCY 2 cut(s) 46, 610
PvuII CAGCTG 1 cut(s) 389
SatI GCNGC 5 cut(s) 210, 213, 387, 561, 719
Sau3AI GATC 3 cut(s) 46, 278, 610
Sau96I GGNCC 1 cut(s) 414
SbfI CCTGCAGG 1 cut(s) 702
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 3 cut(s) 188, 255, 715
SdaI CCTGCAGG 1 cut(s) 702
SduI GDGCHC 2 cut(s) 91, 655
SfaNI GCATC 1 cut(s) 436
SfcI CTRYAG 1 cut(s) 698
SinI GGWCC 1 cut(s) 414
Sse8387I CCTGCAGG 1 cut(s) 702
Sse9I AATT 3 cut(s) 121, 307, 688
SsiI CCGC 1 cut(s) 210
StyD4I CCNGG 3 cut(s) 186, 253, 713
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 2 cut(s) 421, 556
TasI AATT 3 cut(s) 121, 307, 688
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 1 cut(s) 529
TscAI CASTG 2 cut(s) 177, 280
TseI GCWGC 4 cut(s) 212, 386, 560, 718
TspDTI ATGAA 6 cut(s) 314, 318, 381, 419, 591, 690
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 2 cut(s) 177, 280
VpaK11BI GGWCC 1 cut(s) 414
XapI RAATTY 2 cut(s) 307, 688
XceI RCATGY 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.