pycom02g12000
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000440
Physical Location & Seq
Forward (+)
8573479 .. 8573919
441 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12000.1

Sequence Viewer

Length: 441 bp
ATGTTTCAGGTCAGTGACGTTGTTATGGTATTTTTGAGGAAAGAACGATTTCTAGTCGGGACTTACAGCAAGCTCAAGCCTCGCAAGTATGGACCCTATAAAATTATACAGAAGATTCATGATAATGCTTATGTTGTGGATCTTCCTTCTTCAATGGGCATTTCTCCTACCTTCAATGTTATTGATTTATTTGAGTTCCATTCGGATGATGAGCCGTTGTATCCGGATGCTAACTCGAGGATGAGTTCTTTTCACAAAGGGGAAACTGATGTAGAGCAGCTAGCGGAAAAGATAGAAAAACAATTAGAGTGCCGCAAACCCGAGAGCACAACAACAACCAAGTCTGATAGTTTTTTATTTTATATTTTCGTTTCCCTTTTTAGCCCTTCTAAAGTTTGTTTTATTGTAGATTATAAACACACCTTCTTGGCATATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

147

Amino Acids

16.98

Weight (kDa)

6.41

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 6 - 66 1e-18 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 2 cut(s) 284, 313
AclWI GGATC 1 cut(s) 147
AgsI TTSAA 2 cut(s) 153, 175
AluBI AGCT 2 cut(s) 73, 280
AluI AGCT 2 cut(s) 73, 280
Alw21I GWGCWC 1 cut(s) 329
AlwI GGATC 1 cut(s) 147
Ama87I CYCGRG 2 cut(s) 235, 320
Aor13HI TCCGGA 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 277
Asp700I GAANNNNTTC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 92
AsuNHI GCTAGC 1 cut(s) 280
AvaI CYCGRG 2 cut(s) 235, 320
AvaII GGWCC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 289
BceAI ACGGC 1 cut(s) 199
BciVI GTATCC 1 cut(s) 231
BfaI CTAG 2 cut(s) 53, 281
BfuI GTATCC 1 cut(s) 231
BisI GCNGC 2 cut(s) 278, 313
BlsI GCNGC 2 cut(s) 279, 314
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 2 cut(s) 235, 320
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 94
BmsI GCATC 1 cut(s) 217
BmtI GCTAGC 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 223
BseAI TCCGGA 1 cut(s) 223
BseGI GGATG 3 cut(s) 211, 232, 246
BseXI GCAGC 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 329
BsiHKCI CYCGRG 2 cut(s) 235, 320
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 73
BsoBI CYCGRG 2 cut(s) 235, 320
Bsp1286I GDGCHC 1 cut(s) 329
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 2 cut(s) 284, 313
BspEI TCCGGA 1 cut(s) 223
BspHI TCATGA 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 94
BspOI GCTAGC 1 cut(s) 284
BspPI GGATC 1 cut(s) 147
BssMI GATC 1 cut(s) 139
BstC8I GCNNGC 2 cut(s) 71, 282
BstF5I GGATG 3 cut(s) 211, 232, 246
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuI GTATCC 1 cut(s) 231
BtsCI GGATG 3 cut(s) 211, 232, 246
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 2 cut(s) 71, 282
CciI TCATGA 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 92
CviAII CATG 1 cut(s) 119
CviJI RGCY 5 cut(s) 73, 79, 214, 280, 384
CviKI_1 RGCY 5 cut(s) 73, 79, 214, 280, 384
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 92
Eco88I CYCGRG 2 cut(s) 235, 320
FaeI CATG 1 cut(s) 122
FaiI YATR 9 cut(s) 26, 90, 99, 107, 120, 132, 363, 414, 433
FaqI GGGAC 1 cut(s) 73
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 278, 313
FokI GGATG 3 cut(s) 218, 239, 253
Fsp4HI GCNGC 2 cut(s) 278, 313
FspBI CTAG 2 cut(s) 53, 281
GluI GCNGC 2 cut(s) 278, 313
HapII CCGG 1 cut(s) 224
Hin1II CATG 1 cut(s) 122
HinfI GANTC 1 cut(s) 115
HpaII CCGG 1 cut(s) 224
Hpy188I TCNGA 2 cut(s) 205, 346
Hpy188III TCNNGA 3 cut(s) 58, 119, 224
HpyAV CCTTC 4 cut(s) 156, 181, 396, 433
HpyCH4IV ACGT 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 122
Kpn2I TCCGGA 1 cut(s) 223
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 1 cut(s) 237
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 53, 281
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 14
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 3 cut(s) 124, 134, 141
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 2 cut(s) 102, 302
MnlI CCTC 3 cut(s) 30, 90, 231
MroI TCCGGA 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 48
MslI CAYNNNNRTG 2 cut(s) 123, 204
MspI CCGG 1 cut(s) 224
NdeII GATC 1 cut(s) 139
NheI GCTAGC 1 cut(s) 280
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 14
PaeR7I CTCGAG 1 cut(s) 235
PagI TCATGA 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 2 cut(s) 279, 314
PsiI TTATAA 1 cut(s) 414
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 92
PspXI VCTCGAGB 1 cut(s) 235
PsuI RGATCY 1 cut(s) 139
RseI CAYNNNNRTG 2 cut(s) 123, 204
SatI GCNGC 2 cut(s) 278, 313
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 329
SetI ASST 6 cut(s) 12, 21, 75, 173, 282, 425
SfaNI GCATC 1 cut(s) 217
Sfr274I CTCGAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 92
SlaI CTCGAG 1 cut(s) 235
SmiMI CAYNNNNRTG 2 cut(s) 123, 204
SmlI CTYRAG 2 cut(s) 74, 235
SmoI CTYRAG 2 cut(s) 74, 235
Sse9I AATT 2 cut(s) 102, 302
SsiI CCGC 2 cut(s) 284, 313
SspMI CTAG 2 cut(s) 53, 281
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 236
TasI AATT 2 cut(s) 102, 302
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 1 cut(s) 115
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 92
XhoI CTCGAG 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 2 cut(s) 53, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.