pycom11g11060
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000440
Physical Location & Seq
Reverse (-)
9512459 .. 9512824
366 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g11060.1

Sequence Viewer

Length: 366 bp
ATGAATAGAATTAGTGGCAACGCTGAAAATTATGTTGACAACATCAAGCAGGTCCCTAGCGTGACTCACAAGCACCTTCACGAAACAAGTCATAAATACAAAGCTCATGTAGATTCCAAAAGGCGAATGGCCGAGTTTGATGTGGGAGATTTTGTTTGGGTAGTTTTGATGAAGGATTGTTTTTTAGCTAAAGATTATAACAAATTATGTGCAACGGAAGATTGGCCACATAAAATTCTTGAAAAGATTTACCCCAATGATTATGGCCTGAAGTTACCAAGCCATATTTGTGCTTCAGATGTATTTAATGTGAAACACCTCATACTATTCAGTGGGGACATCGACTATACTGGACATGCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

122

Amino Acids

14.0

Weight (kDa)

7.12

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 49 - 107 1.9e-12 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
Acc36I ACCTGC 1 cut(s) 40
AcoI YGGCCR 2 cut(s) 129, 224
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 2 cut(s) 279, 290
AgsI TTSAA 1 cut(s) 242
AluBI AGCT 2 cut(s) 104, 188
AluI AGCT 2 cut(s) 104, 188
AoxI GGCC 3 cut(s) 129, 224, 265
ApoI RAATTY 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 52
AvaII GGWCC 1 cut(s) 52
BalI TGGCCA 1 cut(s) 226
BfaI CTAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 40
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bse1I ACTGG 1 cut(s) 355
BseNI ACTGG 1 cut(s) 355
BshFI GGCC 3 cut(s) 131, 226, 267
BslFI GGGAC 2 cut(s) 38, 350
BsmFI GGGAC 2 cut(s) 38, 350
BsnI GGCC 3 cut(s) 131, 226, 267
BspANI GGCC 3 cut(s) 131, 226, 267
BspLI GGNNCC 1 cut(s) 54
BspMI ACCTGC 1 cut(s) 40
BsrI ACTGG 1 cut(s) 355
BstNSI RCATGY 1 cut(s) 359
BsuRI GGCC 3 cut(s) 131, 226, 267
BtsIMutI CAGTG 1 cut(s) 337
BveI ACCTGC 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 2 cut(s) 107, 356
CviJI RGCY 6 cut(s) 104, 131, 188, 226, 267, 282
CviKI_1 RGCY 6 cut(s) 104, 131, 188, 226, 267, 282
EaeI YGGCCR 2 cut(s) 129, 224
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 2 cut(s) 279, 290
EcoO109I RGGNCCY 1 cut(s) 52
FaeI CATG 2 cut(s) 110, 359
FaqI GGGAC 2 cut(s) 38, 350
FatI CATG 2 cut(s) 106, 355
FspBI CTAG 1 cut(s) 57
HaeIII GGCC 3 cut(s) 131, 226, 267
Hin1II CATG 2 cut(s) 110, 359
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 2 cut(s) 64, 113
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 2 cut(s) 80, 239
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 86, 166
HpyCH4V TGCA 2 cut(s) 212, 359
Hsp92II CATG 2 cut(s) 110, 359
LpnPI CCDG 3 cut(s) 35, 281, 336
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 61, 273
MboII GAAGA 1 cut(s) 230
MlsI TGGCCA 1 cut(s) 226
MluCI AATT 4 cut(s) 9, 28, 203, 234
MluNI TGGCCA 1 cut(s) 226
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 1 cut(s) 329
Mox20I TGGCCA 1 cut(s) 226
MscI TGGCCA 1 cut(s) 226
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 226
NlaIII CATG 2 cut(s) 110, 359
NlaIV GGNNCC 1 cut(s) 54
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 61
NspI RCATGY 1 cut(s) 359
PfeI GAWTC 1 cut(s) 113
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 52
PsiI TTATAA 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 1 cut(s) 306
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 58
SetI ASST 5 cut(s) 54, 78, 106, 190, 321
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 4 cut(s) 9, 28, 203, 234
SspMI CTAG 1 cut(s) 57
TaqI TCGA 1 cut(s) 342
TasI AATT 4 cut(s) 9, 28, 203, 234
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 17, 185
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 234
XceI RCATGY 1 cut(s) 359
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.