RchiOBHm_Chr3g0461871

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000440
Physical Location & Seq
Reverse (-)
9808667 .. 9810244
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42826

Sequence Viewer

Length: 1578 bp
ATGCATGCAAGGTGGGTGAGTTTTCTGCAGAAATTTCCTTTTGTGATTCAACATAAATCTGGTACTCTTAACCGGGTCGCAGATGCTTTGAGTAGGAGGGCGTCCTTACTGGTCACTTTAGCTCAGGAGATCGTGGGGTTTGATCTCTTGAAGGAGTTGTATGAGGAAGATGTTGATTTCAAAGCGATTTGGGCCAAGTGCAGCAATAACAATGCAGTCGCAGATTTTTATGAGAATGAAGGATATTTATTCAAGGGCAACAGACTTTGTATCCCTAGTTCTTCATTGAGGGAAAAACTGATCAGAGATCTGCATGGAGGAGGATTGAGTGGGCACTTGGGCATAGACAAGACTATTGCTAGTCTTGAGGAGAGGTATTTCTGGCCACAGTTGAAGAAGGATGCAGGAACTATTGTGAGAAAGTGCTACACCTGCCAGGTATCTAAGGGTCAGTCCCAAAATACAGGTCTTTATCTACCTTTACCTGTTCCTGATGACATTTGGCAGGACCTTGCTATGGATTTTGTGTTGGGCTTACCCCGTACCCAAAGGGGAGTGGATTCAGTGTTTGTGGTAGTTGACAGGTTCTCTAAGATGGTGCATTTCATCGCATGTAAGAAGACTGCTGATGCTTCTAATATAGCTAAACTGTTCTTCAGGGAAGTGGTTCATTTGCATGGAGTACCCAAGTCCATTACATCTGACAGAGACACCAAGTTCCTTAGCCATTTCTGGATTACTTTGTGGAGGATGTTTGGAACGTCTTTGAACCGTAGTAGCACAGCCCATCCTCAAACGGATGGTCAGACAGAGGTTACTAACAGAACTTTGGGTAACATGGTCCGGAGCGTTTGTGGAGATCGGCCCAAACAGTGGGATTATGCTTTGCCCCAAGTGGAGTTTGCTTATAACAGTGCTGTGCATAGCGCCACAGGGAAGTCACCATTCTCCTTAGTTTATACTACTGTTCCTCAACATGTGGTTGATCTTGTGAAGCTTCCTAAAGTTCCTGGAGTTAGTGTTGCTGCTGATAGTATGGCTAGAGATGTACAAGCTGTTCGGGATGAAGTTAAGGCCAAGCTGGAAGCAACTAATGCTAAGAATAAAGCTGCAGCTGATAAACATCGCAGAGTGAAATTGTTCCAAGAAGGTGATGACGTGATGGTATTTCTGAGGAAGGAGAGATTTCCTGTTGGTACCTATAACAAGCTGAAACCCAGAAAATATGGTCCTTTTAAGGTGCTGCGGAAGATTAACGACAATGCTTATGTTGTCGCTCTACCTGATTCTATGGGTATCTCTAACACTTTTAATGTGGCTGACCTGCATGAGTTTCGTGAAGATGAAGTTCTTTATCCATATGAGAACTCGGGGTCGAGTTCTTCGGAGGTGGAGGAGACTGATGCAGAGAGGATGAAGGCTCAATTTGAACAACAGTTAGACCGTGCTAAAGGAGGAAAACGAAAAGTGACTAGTAGACAGGAAATGGCAGTTCGGTGTCTGATTGGGACGCACCTTACCTTTCCCGAAAAGGAATCGCGCCAGAAACAAGACTCATGGCTTTGCCATGAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-CCHC zf-H2C2

Protein Analysis

525

Amino Acids

59.48

Weight (kDa)

9.07

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 94 - 149 1.4e-17 Integrase zinc binding domain
zf-H2C2 PF09337 112 - 146 1e-06 H2C2 zinc finger
rve PF00665 172 - 263 6.8e-07 Integrase core domain
SH3_Tf2-1 PF24626 384 - 445 1.4e-19 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 909
AarI CACCTGC 1 cut(s) 440
Acc36I ACCTGC 2 cut(s) 440, 1332
Acc65I GGTACC 1 cut(s) 1196
AccB1I GGYRCC 1 cut(s) 1196
AccB7I CCANNNNNTGG 1 cut(s) 873
AccI GTMKAC 1 cut(s) 1477
AccII CGCG 1 cut(s) 1540
AccIII TCCGGA 1 cut(s) 843
AciI CCGC 1 cut(s) 1246
AcoI YGGCCR 1 cut(s) 383
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 640
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 5 cut(s) 64, 544, 684, 1050, 1198
AfiI CCNNNNNNNGG 2 cut(s) 517, 873
AflIII ACRYGT 1 cut(s) 976
AgsI TTSAA 7 cut(s) 50, 151, 181, 253, 394, 769, 1430
AhlI ACTAGT 1 cut(s) 1472
AjiI CACGTC 1 cut(s) 1159
AjnI CCWGG 2 cut(s) 435, 1009
AluBI AGCT 9 cut(s) 122, 644, 997, 1055, 1081, 1109, 1115, 1210, 1573
AluI AGCT 9 cut(s) 122, 644, 997, 1055, 1081, 1109, 1115, 1210, 1573
Alw26I GTCTC 2 cut(s) 702, 1391
Ama87I CYCGRG 1 cut(s) 1369
Aor13HI TCCGGA 1 cut(s) 843
AoxI GGCC 4 cut(s) 192, 383, 863, 1074
ApeKI GCWGC 5 cut(s) 201, 1025, 1109, 1112, 1243
ApoI RAATTY 1 cut(s) 32
ArsI GACNNNNNNTTYG 4 cut(s) 451, 483, 787, 819
Asp700I GAANNNNTTC 2 cut(s) 666, 1139
Asp718I GGTACC 1 cut(s) 1196
AspLEI GCGC 2 cut(s) 929, 1542
AspS9I GGNCC 5 cut(s) 192, 508, 841, 864, 1229
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 3 cut(s) 28, 933, 1163
AvaI CYCGRG 1 cut(s) 1369
AvaII GGWCC 3 cut(s) 508, 841, 1229
BaeGI GKGCMC 1 cut(s) 336
BalI TGGCCA 1 cut(s) 385
BanI GGYRCC 1 cut(s) 1196
BbsI GAAGAC 1 cut(s) 626
BbvI GCAGC 5 cut(s) 213, 1012, 1096, 1124, 1230
BccI CCATC 4 cut(s) 589, 794, 795, 1156
BcgI CGANNNNNNTGC 2 cut(s) 1316, 1350
BciT130I CCWGG 2 cut(s) 437, 1011
BciVI GTATCC 1 cut(s) 281
BclI TGATCA 1 cut(s) 300
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 702, 1391
BcuI ACTAGT 1 cut(s) 1472
BfaI CTAG 4 cut(s) 276, 360, 1041, 1473
BfmI CTRYAG 3 cut(s) 26, 1110, 1574
BfoI RGCGCY 1 cut(s) 930
BfuAI ACCTGC 2 cut(s) 440, 1332
BfuI GTATCC 1 cut(s) 281
BglII AGATCT 1 cut(s) 307
BisI GCNGC 5 cut(s) 202, 1026, 1110, 1113, 1244
BlsI GCNGC 5 cut(s) 203, 1027, 1111, 1114, 1245
Bme1390I CCNGG 3 cut(s) 74, 437, 1011
Bme18I GGWCC 3 cut(s) 508, 841, 1229
BmeT110I CYCGRG 1 cut(s) 1369
BmgBI CACGTC 1 cut(s) 1159
BmgT120I GGNCC 5 cut(s) 192, 508, 841, 864, 1229
BmiI GGNNCC 1 cut(s) 1198
BmrFI CCNGG 3 cut(s) 74, 437, 1011
BmsI GCATC 4 cut(s) 73, 391, 619, 1393
BpiI GAAGAC 1 cut(s) 626
BpmI CTGGAG 1 cut(s) 1032
Bpu10I CCTNAGC 2 cut(s) 123, 722
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 1122
BsaHI GRCGYC 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 843
BsaXI ACNNNNNCTCC 4 cut(s) 838, 868, 1005, 1035
Bsc4I CCNNNNNNNGG 2 cut(s) 517, 873
Bse1I ACTGG 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 1122
BseAI TCCGGA 1 cut(s) 843
BseBI CCWGG 2 cut(s) 437, 1011
BseGI GGATG 6 cut(s) 406, 756, 787, 805, 1069, 1419
BseJI GATNNNNATC 1 cut(s) 1122
BseLI CCNNNNNNNGG 2 cut(s) 517, 873
BseMII CTCAG 2 cut(s) 137, 1163
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 3 cut(s) 333, 383, 1409
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 5 cut(s) 213, 1012, 1096, 1124, 1230
BsgI GTGCAG 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 1540
BshFI GGCC 4 cut(s) 194, 385, 865, 1076
BshNI GGYRCC 1 cut(s) 1196
BsiHKCI CYCGRG 1 cut(s) 1369
BsiSI CCGG 2 cut(s) 73, 844
BslFI GGGAC 2 cut(s) 439, 1522
BslI CCNNNNNNNGG 2 cut(s) 517, 873
BsmAI GTCTC 2 cut(s) 702, 1391
BsmFI GGGAC 2 cut(s) 439, 1522
BsnI GGCC 4 cut(s) 194, 385, 865, 1076
BsoBI CYCGRG 1 cut(s) 1369
Bsp1286I GDGCHC 1 cut(s) 336
Bsp13I TCCGGA 1 cut(s) 843
Bsp1407I TGTACA 1 cut(s) 1048
Bsp143I GATC 6 cut(s) 129, 142, 300, 307, 859, 985
BspACI CCGC 1 cut(s) 1246
BspANI GGCC 4 cut(s) 194, 385, 865, 1076
BspCNI CTCAG 2 cut(s) 136, 1164
BspEI TCCGGA 1 cut(s) 843
BspFNI CGCG 1 cut(s) 1540
BspLI GGNNCC 1 cut(s) 1198
BspMAI CTGCAG 2 cut(s) 30, 1114
BspMI ACCTGC 2 cut(s) 440, 1332
BspT107I GGYRCC 1 cut(s) 1196
BsrGI TGTACA 1 cut(s) 1048
BsrI ACTGG 1 cut(s) 114
BssMI GATC 6 cut(s) 129, 142, 300, 307, 859, 985
BssNI GRCGYC 1 cut(s) 101
Bst2UI CCWGG 2 cut(s) 437, 1011
Bst4CI ACNGT 8 cut(s) 390, 651, 773, 873, 914, 967, 1437, 1445
BstACI GRCGYC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 1094
BstAUI TGTACA 1 cut(s) 1048
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 7 cut(s) 123, 444, 591, 722, 952, 1098, 1172
BstF5I GGATG 6 cut(s) 406, 756, 787, 805, 1069, 1419
BstFNI CGCG 1 cut(s) 1540
BstH2I RGCGCY 1 cut(s) 930
BstHHI GCGC 2 cut(s) 929, 1542
BstKTI GATC 6 cut(s) 132, 145, 303, 310, 862, 988
BstMAI GTCTC 2 cut(s) 702, 1391
BstMBI GATC 6 cut(s) 129, 142, 300, 307, 859, 985
BstMWI GCNNNNNNNGC 3 cut(s) 191, 432, 1094
BstNI CCWGG 2 cut(s) 437, 1011
BstNSI RCATGY 3 cut(s) 8, 615, 980
BstSCI CCNGG 3 cut(s) 72, 435, 1009
BstSFI CTRYAG 3 cut(s) 26, 1110, 1574
BstSLI GKGCMC 1 cut(s) 336
BstUI CGCG 1 cut(s) 1540
BstV1I GCAGC 5 cut(s) 213, 1012, 1096, 1124, 1230
BstV2I GAAGAC 1 cut(s) 626
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuI GTATCC 1 cut(s) 281
BsuRI GGCC 4 cut(s) 194, 385, 865, 1076
BtgZI GCGATG 2 cut(s) 592, 1109
BtrI CACGTC 1 cut(s) 1159
BtsCI GGATG 6 cut(s) 406, 756, 787, 805, 1069, 1419
BtsIMutI CAGTG 3 cut(s) 570, 878, 919
BveI ACCTGC 2 cut(s) 440, 1332
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 2 cut(s) 929, 1542
Cfr13I GGNCC 5 cut(s) 192, 508, 841, 864, 1229
CseI GACGC 2 cut(s) 90, 1519
Csp6I GTAC 5 cut(s) 63, 543, 683, 1049, 1197
CviAII CATG 9 cut(s) 5, 314, 612, 677, 838, 977, 1328, 1557, 1568
CviQI GTAC 5 cut(s) 63, 543, 683, 1049, 1197
DdeI CTNAG 7 cut(s) 123, 444, 591, 722, 952, 1098, 1172
DpnI GATC 6 cut(s) 131, 144, 302, 309, 861, 987
DpnII GATC 6 cut(s) 129, 142, 300, 307, 859, 985
EaeI YGGCCR 1 cut(s) 383
Eco47I GGWCC 3 cut(s) 508, 841, 1229
Eco57I CTGAAG 1 cut(s) 640
Eco88I CYCGRG 1 cut(s) 1369
EcoO109I RGGNCCY 1 cut(s) 508
EcoRII CCWGG 2 cut(s) 435, 1009
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 9 cut(s) 8, 317, 615, 680, 841, 980, 1331, 1560, 1571
FaqI GGGAC 2 cut(s) 439, 1522
FatI CATG 9 cut(s) 4, 313, 611, 676, 837, 976, 1327, 1556, 1567
FauNDI CATATG 1 cut(s) 1360
FbaI TGATCA 1 cut(s) 300
FblI GTMKAC 1 cut(s) 1477
Fnu4HI GCNGC 5 cut(s) 202, 1026, 1110, 1113, 1244
FokI GGATG 6 cut(s) 413, 763, 774, 812, 1076, 1426
Fsp4HI GCNGC 5 cut(s) 202, 1026, 1110, 1113, 1244
FspBI CTAG 4 cut(s) 276, 360, 1041, 1473
GlaI GCGC 2 cut(s) 928, 1541
GluI GCNGC 5 cut(s) 202, 1026, 1110, 1113, 1244
GsuI CTGGAG 1 cut(s) 1032
HaeII RGCGCY 1 cut(s) 930
HaeIII GGCC 4 cut(s) 194, 385, 865, 1076
HapII CCGG 2 cut(s) 73, 844
HgaI GACGC 2 cut(s) 90, 1519
HhaI GCGC 2 cut(s) 929, 1542
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 9 cut(s) 8, 317, 615, 680, 841, 980, 1331, 1560, 1571
Hin6I GCGC 2 cut(s) 927, 1540
HinP1I GCGC 2 cut(s) 927, 1540
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HindIII AAGCTT 1 cut(s) 995
HinfI GANTC 5 cut(s) 46, 560, 1286, 1535, 1553
HpaII CCGG 2 cut(s) 73, 844
HphI GGTGA 3 cut(s) 28, 933, 1163
Hpy166II GTNNAC 2 cut(s) 580, 1478
Hpy188I TCNGA 6 cut(s) 305, 703, 807, 1173, 1387, 1503
Hpy188III TCNNGA 9 cut(s) 125, 148, 365, 491, 733, 844, 1061, 1337, 1526
Hpy8I GTNNAC 2 cut(s) 580, 1478
HpyAV CCTTC 6 cut(s) 145, 233, 391, 1142, 1171, 1411
HpyCH4III ACNGT 8 cut(s) 390, 651, 773, 873, 914, 967, 1437, 1445
HpyCH4IV ACGT 2 cut(s) 761, 1158
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 432, 1094
HpyF3I CTNAG 7 cut(s) 123, 444, 591, 722, 952, 1098, 1172
HpySE526I ACGT 2 cut(s) 761, 1158
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 9 cut(s) 8, 317, 615, 680, 841, 980, 1331, 1560, 1571
HspAI GCGC 2 cut(s) 927, 1540
Kpn2I TCCGGA 1 cut(s) 843
KpnI GGTACC 1 cut(s) 1200
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 6 cut(s) 129, 142, 300, 307, 859, 985
LmnI GCTCC 1 cut(s) 846
Lsp1109I GCAGC 5 cut(s) 213, 1012, 1096, 1124, 1230
LweI GCATC 4 cut(s) 73, 391, 619, 1393
MaeI CTAG 4 cut(s) 276, 360, 1041, 1473
MaeII ACGT 2 cut(s) 761, 1158
MaeIII GTNAC 5 cut(s) 112, 814, 833, 939, 1468
MalI GATC 6 cut(s) 131, 144, 302, 309, 861, 987
MboI GATC 6 cut(s) 129, 142, 300, 307, 859, 985
MboII GAAGA 8 cut(s) 179, 273, 406, 631, 646, 1261, 1352, 1374
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 336
MlsI TGGCCA 1 cut(s) 385
MluCI AATT 3 cut(s) 32, 1136, 1424
MluNI TGGCCA 1 cut(s) 385
MlyI GAGTC 1 cut(s) 1547
Mox20I TGGCCA 1 cut(s) 385
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 843
MroXI GAANNNNTTC 2 cut(s) 666, 1139
MscI TGGCCA 1 cut(s) 385
MseI TTAA 5 cut(s) 69, 1071, 1236, 1254, 1311
MslI CAYNNNNRTG 1 cut(s) 675
Msp20I TGGCCA 1 cut(s) 385
MspA1I CMGCKG 1 cut(s) 1115
MspI CCGG 2 cut(s) 73, 844
MspR9I CCNGG 3 cut(s) 74, 437, 1011
MvaI CCWGG 2 cut(s) 437, 1011
MvnI CGCG 1 cut(s) 1540
MwoI GCNNNNNNNGC 3 cut(s) 191, 432, 1094
NciI CCSGG 1 cut(s) 74
NdeI CATATG 1 cut(s) 1360
NdeII GATC 6 cut(s) 129, 142, 300, 307, 859, 985
NlaIII CATG 9 cut(s) 8, 317, 615, 680, 841, 980, 1331, 1560, 1571
NlaIV GGNNCC 1 cut(s) 1198
NmuCI GTSAC 3 cut(s) 112, 939, 1468
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 8, 615, 980
PaeI GCATGC 1 cut(s) 8
PaqCI CACCTGC 1 cut(s) 440
PciI ACATGT 1 cut(s) 976
PdmI GAANNNNTTC 2 cut(s) 666, 1139
PfeI GAWTC 4 cut(s) 46, 560, 1286, 1535
PflMI CCANNNNNTGG 1 cut(s) 873
PfoI TCCNGGA 1 cut(s) 1009
PkrI GCNGC 5 cut(s) 203, 1027, 1111, 1114, 1245
PleI GAGTC 1 cut(s) 1547
PpsI GAGTC 1 cut(s) 1547
PpuMI RGGWCCY 1 cut(s) 508
PscI ACATGT 1 cut(s) 976
PsiI TTATAA 1 cut(s) 909
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 2 cut(s) 435, 1009
PspGI CCWGG 2 cut(s) 435, 1009
PspN4I GGNNCC 1 cut(s) 1198
PspPI GGNCC 5 cut(s) 192, 508, 841, 864, 1229
PspPPI RGGWCCY 1 cut(s) 508
PsrI GAACNNNNNNTAC 4 cut(s) 262, 294, 1041, 1073
PstI CTGCAG 2 cut(s) 30, 1114
PsuI RGATCY 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 1115
RsaI GTAC 5 cut(s) 64, 544, 684, 1050, 1198
RsaNI GTAC 5 cut(s) 63, 543, 683, 1049, 1197
RseI CAYNNNNRTG 1 cut(s) 675
SaqAI TTAA 5 cut(s) 69, 1071, 1236, 1254, 1311
SatI GCNGC 5 cut(s) 202, 1026, 1110, 1113, 1244
Sau3AI GATC 6 cut(s) 129, 142, 300, 307, 859, 985
Sau96I GGNCC 5 cut(s) 192, 508, 841, 864, 1229
SchI GAGTC 1 cut(s) 1547
ScrFI CCNGG 3 cut(s) 74, 437, 1011
SduI GDGCHC 1 cut(s) 336
SfaNI GCATC 4 cut(s) 73, 391, 619, 1393
SfcI CTRYAG 3 cut(s) 26, 1110, 1574
SinI GGWCC 3 cut(s) 508, 841, 1229
SmiMI CAYNNNNRTG 1 cut(s) 675
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SpeI ACTAGT 1 cut(s) 1472
SphI GCATGC 1 cut(s) 8
Sse9I AATT 3 cut(s) 32, 1136, 1424
SsiI CCGC 1 cut(s) 1246
SspMI CTAG 4 cut(s) 276, 360, 1041, 1473
StyD4I CCNGG 3 cut(s) 72, 435, 1009
TaaI ACNGT 8 cut(s) 390, 651, 773, 873, 914, 967, 1437, 1445
TaiI ACGT 2 cut(s) 764, 1161
TaqI TCGA 1 cut(s) 1376
TasI AATT 3 cut(s) 32, 1136, 1424
TatI WGTACW 1 cut(s) 1048
TfiI GAWTC 4 cut(s) 46, 560, 1286, 1535
Tru1I TTAA 5 cut(s) 69, 1071, 1236, 1254, 1311
Tru9I TTAA 5 cut(s) 69, 1071, 1236, 1254, 1311
TscAI CASTG 3 cut(s) 570, 878, 919
TseFI GTSAC 3 cut(s) 112, 939, 1468
TseI GCWGC 5 cut(s) 201, 1025, 1109, 1112, 1243
Tsp45I GTSAC 3 cut(s) 112, 939, 1468
TspDTI ATGAA 7 cut(s) 252, 273, 595, 659, 1080, 1359, 1430
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 3 cut(s) 570, 878, 919
Van91I CCANNNNNTGG 1 cut(s) 873
VpaK11BI GGWCC 3 cut(s) 508, 841, 1229
XapI RAATTY 1 cut(s) 32
XceI RCATGY 3 cut(s) 8, 615, 980
XmiI GTMKAC 1 cut(s) 1477
XmnI GAANNNNTTC 2 cut(s) 666, 1139
XspI CTAG 4 cut(s) 276, 360, 1041, 1473
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.