Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000440

Physical Location & Seq

Genomic Coordinates Reverse (-)

27879707 .. 27880550

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG172000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAAATATATGAAAAGCCGGTTGAGGCTGGAATAGGTATAGAAGATCCAGAGACTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAAGTAACCACTACATGTGAAAGCAATTTGAATTCCCATCTGCAAGGGCGAAAACACAAGGCAGCATATGAGGCAGTGAAAGTAAGGAACCAGGCATTTTTGTCCAAGATTGCCGCAGCTTCAACTGCAAAAACATCCAATCAGCCAAATAAGGCGCCAGGAAAGAGTTTCCCGAGCAGTGGATCAAAACCAAAAGTTCCTATGAATGAAAATTCAAAATCCATAAAGGCAAATGGTGGACAGAATGATGTCAAAGTTGTGCAGGTAACGGCAAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0042538 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22 zf-met

Protein Analysis

125

Amino Acids

13.48

Weight (kDa)

9.4

Isoelectric Point (pI)

21.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-met	PF12874	27 - 51	2.4e-10	Zinc-finger of C2H2 type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica	Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis	pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis	RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata	RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora	Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa	Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha	Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana	Rw6G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	349
AccB1I	GGYRCC	1 cut(s)	250
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	2 cut(s)	41, 286
AcsI	RAATTY	2 cut(s)	127, 307
AcyI	GRCGYC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	110
AgsI	TTSAA	3 cut(s)	127, 219, 312
AjnI	CCWGG	2 cut(s)	186, 253
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	41, 286
Ama87I	CYCGRG	1 cut(s)	268
ApeKI	GCWGC	2 cut(s)	158, 212
ApoI	RAATTY	2 cut(s)	127, 307
AspLEI	GCGC	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	170, 224
BccI	CCATC	1 cut(s)	141
BciT130I	CCWGG	2 cut(s)	188, 255
BcoDI	GTCTC	1 cut(s)	47
BfoI	RGCGCY	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	349
BisI	GCNGC	3 cut(s)	159, 210, 213
BlsI	GCNGC	3 cut(s)	160, 211, 214
Bme1390I	CCNGG	2 cut(s)	188, 255
BmeT110I	CYCGRG	1 cut(s)	268
BmiI	GGNNCC	2 cut(s)	185, 252
BmrFI	CCNGG	2 cut(s)	188, 255
BsaHI	GRCGYC	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	19
BseBI	CCWGG	2 cut(s)	188, 255
BseGI	GGATG	1 cut(s)	230
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	170, 224
BsgI	GTGCAG	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	46, 278
BspACI	CCGC	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	185, 252
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	41, 286
BspT107I	GGYRCC	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	19
BssMI	GATC	2 cut(s)	46, 278
BssNI	GRCGYC	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	188, 255
BstACI	GRCGYC	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	230
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	2 cut(s)	49, 281
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	46, 278
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 221
BstNI	CCWGG	2 cut(s)	188, 255
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	2 cut(s)	186, 253
BstV1I	GCAGC	2 cut(s)	170, 224
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	230
BtsI	GCAGTG	2 cut(s)	177, 280
BtsIMutI	CAGTG	2 cut(s)	177, 280
BveI	ACCTGC	1 cut(s)	349
CfoI	GCGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	19
CviAII	CATG	1 cut(s)	111
CviJI	RGCY	4 cut(s)	19, 29, 215, 241
CviKI_1	RGCY	4 cut(s)	19, 29, 215, 241
DinI	GGCGCC	1 cut(s)	252
DpnI	GATC	2 cut(s)	48, 280
DpnII	GATC	2 cut(s)	46, 278
Eco88I	CYCGRG	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	127
EcoRII	CCWGG	2 cut(s)	186, 253
EgeI	GGCGCC	1 cut(s)	252
EheI	GGCGCC	1 cut(s)	252
FaeI	CATG	1 cut(s)	114
FaiI	YATR	8 cut(s)	10, 12, 41, 112, 163, 165, 299, 320
FatI	CATG	1 cut(s)	110
FauNDI	CATATG	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	159, 210, 213
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	3 cut(s)	159, 210, 213
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	3 cut(s)	159, 210, 213
HaeII	RGCGCY	1 cut(s)	254
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	114
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	81, 335
Hpy188III	TCNNGA	3 cut(s)	50, 70, 268
Hpy8I	GTNNAC	2 cut(s)	81, 335
HpyCH4V	TGCA	3 cut(s)	139, 224, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 221
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	114
HspAI	GCGC	1 cut(s)	251
KasI	GGCGCC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	46, 278
LpnPI	CCDG	9 cut(s)	15, 33, 63, 83, 173, 200, 240, 267, 344
Lsp1109I	GCAGC	2 cut(s)	170, 224
MaeIII	GTNAC	2 cut(s)	100, 361
MalI	GATC	2 cut(s)	48, 280
MboI	GATC	2 cut(s)	46, 278
MboII	GAAGA	1 cut(s)	56
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	3 cut(s)	121, 127, 307
Mly113I	GGCGCC	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	2 cut(s)	19, 160
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	2 cut(s)	188, 255
MvaI	CCWGG	2 cut(s)	188, 255
MwoI	GCNNNNNNNGC	2 cut(s)	167, 221
NarI	GGCGCC	1 cut(s)	251
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	2 cut(s)	46, 278
NlaIII	CATG	1 cut(s)	114
NlaIV	GGNNCC	2 cut(s)	185, 252
NspI	RCATGY	1 cut(s)	114
PciI	ACATGT	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	160, 211, 214
PleI	GAGTC	1 cut(s)	49
PluTI	GGCGCC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	49
PscI	ACATGT	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	186, 253
PspGI	CCWGG	2 cut(s)	186, 253
PspN4I	GGNNCC	2 cut(s)	185, 252
PsuI	RGATCY	1 cut(s)	46
SatI	GCNGC	3 cut(s)	159, 210, 213
Sau3AI	GATC	2 cut(s)	46, 278
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	188, 255
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	3 cut(s)	40, 217, 363
SfoI	GGCGCC	1 cut(s)	252
Sse9I	AATT	3 cut(s)	121, 127, 307
SsiI	CCGC	1 cut(s)	210
SspDI	GGCGCC	1 cut(s)	250
StyD4I	CCNGG	2 cut(s)	186, 253
TasI	AATT	3 cut(s)	121, 127, 307
TauI	GCSGC	1 cut(s)	212
TscAI	CASTG	2 cut(s)	177, 280
TseI	GCWGC	2 cut(s)	158, 212
TspDTI	ATGAA	3 cut(s)	27, 314, 318
TspRI	CASTG	2 cut(s)	177, 280
XapI	RAATTY	2 cut(s)	127, 307
XceI	RCATGY	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.