FvH4_5g25851
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000440
Physical Location & Seq
Reverse (-)
17345383 .. 17346160
778 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25851.t1

Sequence Viewer

Length: 405 bp
ATGATTTGTTTGGAAGAAAAAAGAGTACTAAAATTCCGGGTTTGTGCTTATTATGAGAAAGAAAATGTCTTAGCTGGGCGAAATTACCAGGCCGGGAATGAGCGTCTCAAAGCTTTCAAAGAGGGTGATGGAGTCATGGTCCGTCTCAGCAAAGAGGGATTTCCAGTGGGTACGTACAATAAGCTGAAGCAAAAGAAGATTGGACCAGTAAAGATACTTGAGAAGATCAACGACAATGCCTATGTTGTTGATTTGCCAGCAGAATATTCCATCTCCAAAACTTTCAATGTTAAGGATCTGTATGAATATCATGCTGCTGTCAAGACTTATCCGTTACCAGCTATAACCTCGAGGTCGGGCTTTTCTCAAGAGAAGGGGACTGATGTAGAACAAAGAGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

135

Amino Acids

15.22

Weight (kDa)

9.24

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 42 - 104 1.4e-19 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 349
AciI CCGC 3 cut(s) 178, 297, 307
AclWI GGATC 1 cut(s) 303
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 3 cut(s) 27, 172, 176
AgsI TTSAA 2 cut(s) 118, 286
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 5 cut(s) 74, 113, 184, 341, 398
AluI AGCT 5 cut(s) 74, 113, 184, 341, 398
Alw26I GTCTC 2 cut(s) 110, 149
AlwI GGATC 1 cut(s) 303
Ama87I CYCGRG 1 cut(s) 349
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 2 cut(s) 314, 398
ApoI RAATTY 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 139, 203
AsuC2I CCSGG 2 cut(s) 38, 94
AsuHPI GGTGA 1 cut(s) 137
AvaII GGWCC 2 cut(s) 139, 203
BbvI GCAGC 2 cut(s) 301, 385
BccI CCATC 2 cut(s) 122, 278
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 2 cut(s) 38, 94
BcoDI GTCTC 2 cut(s) 110, 149
BisI GCNGC 2 cut(s) 315, 399
BlsI GCNGC 2 cut(s) 316, 400
BmcAI AGTACT 1 cut(s) 27
Bme1390I CCNGG 3 cut(s) 38, 89, 94
Bme18I GGWCC 2 cut(s) 139, 203
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 139, 203
BmrFI CCNGG 3 cut(s) 38, 89, 94
BpuEI CTTGAG 2 cut(s) 239, 351
BpuMI CCSGG 2 cut(s) 38, 94
BsaAI YACGTR 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bse1I ACTGG 2 cut(s) 164, 206
BseBI CCWGG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 160
BseNI ACTGG 2 cut(s) 164, 206
BseXI GCAGC 2 cut(s) 301, 385
BseYI CCCAGC 1 cut(s) 74
BshFI GGCC 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 349
BsiSI CCGG 2 cut(s) 37, 93
BslFI GGGAC 1 cut(s) 391
BsmAI GTCTC 2 cut(s) 110, 149
BsmBI CGTCTC 2 cut(s) 110, 149
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 1 cut(s) 92
BsoBI CYCGRG 1 cut(s) 349
Bsp143I GATC 2 cut(s) 225, 295
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 159
BspPI GGATC 1 cut(s) 303
BsrI ACTGG 2 cut(s) 164, 206
BssMI GATC 2 cut(s) 225, 295
Bst2UI CCWGG 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 2 cut(s) 70, 146
BstKTI GATC 2 cut(s) 228, 298
BstMAI GTCTC 2 cut(s) 110, 149
BstMBI GATC 2 cut(s) 225, 295
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 3 cut(s) 36, 87, 92
BstSNI TACGTA 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 301, 385
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 139, 203
CseI GACGC 1 cut(s) 92
Csp6I GTAC 3 cut(s) 26, 171, 175
CviAII CATG 2 cut(s) 136, 311
CviJI RGCY 7 cut(s) 74, 92, 113, 184, 341, 360, 398
CviKI_1 RGCY 7 cut(s) 74, 92, 113, 184, 341, 360, 398
CviQI GTAC 3 cut(s) 26, 171, 175
DdeI CTNAG 2 cut(s) 70, 146
DpnI GATC 2 cut(s) 227, 297
DpnII GATC 2 cut(s) 225, 295
Eco105I TACGTA 1 cut(s) 174
Eco47I GGWCC 2 cut(s) 139, 203
Eco57I CTGAAG 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 87
Esp3I CGTCTC 2 cut(s) 110, 149
FaeI CATG 2 cut(s) 139, 314
FaiI YATR 6 cut(s) 54, 137, 243, 303, 312, 344
FalI AAGNNNNNCTT 1 cut(s) 385
FaqI GGGAC 1 cut(s) 391
FatI CATG 2 cut(s) 135, 310
Fnu4HI GCNGC 2 cut(s) 315, 399
Fsp4HI GCNGC 2 cut(s) 315, 399
GluI GCNGC 2 cut(s) 315, 399
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 92
HapII CCGG 2 cut(s) 37, 93
HgaI GACGC 1 cut(s) 92
Hin1II CATG 2 cut(s) 139, 314
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 1 cut(s) 132
HpaII CCGG 2 cut(s) 37, 93
HphI GGTGA 1 cut(s) 137
Hpy188III TCNNGA 2 cut(s) 322, 368
HpyAV CCTTC 1 cut(s) 367
HpyCH4IV ACGT 1 cut(s) 173
HpyF3I CTNAG 2 cut(s) 70, 146
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 2 cut(s) 139, 314
Kzo9I GATC 2 cut(s) 225, 295
LpnPI CCDG 9 cut(s) 50, 60, 74, 101, 106, 177, 219, 270, 351
Lsp1109I GCAGC 2 cut(s) 301, 385
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 333
MalI GATC 2 cut(s) 227, 297
MboI GATC 2 cut(s) 225, 295
MboII GAAGA 3 cut(s) 26, 208, 235
MflI RGATCY 1 cut(s) 295
MluCI AATT 2 cut(s) 32, 82
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 4 cut(s) 115, 148, 345, 358
MseI TTAA 2 cut(s) 291, 403
MspI CCGG 2 cut(s) 37, 93
MspR9I CCNGG 3 cut(s) 38, 89, 94
MvaI CCWGG 1 cut(s) 89
NciI CCSGG 2 cut(s) 38, 94
NdeII GATC 2 cut(s) 225, 295
NlaIII CATG 2 cut(s) 139, 314
PaeR7I CTCGAG 1 cut(s) 349
PkrI GCNGC 2 cut(s) 316, 400
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 87
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 87
PspPI GGNCC 2 cut(s) 139, 203
PspXI VCTCGAGB 1 cut(s) 349
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 3 cut(s) 27, 172, 176
RsaNI GTAC 3 cut(s) 26, 171, 175
SaqAI TTAA 2 cut(s) 291, 403
SatI GCNGC 2 cut(s) 315, 399
Sau3AI GATC 2 cut(s) 225, 295
Sau96I GGNCC 2 cut(s) 139, 203
ScaI AGTACT 1 cut(s) 27
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 3 cut(s) 38, 89, 94
SetI ASST 8 cut(s) 76, 115, 176, 186, 343, 350, 356, 400
Sfr274I CTCGAG 1 cut(s) 349
SinI GGWCC 2 cut(s) 139, 203
SlaI CTCGAG 1 cut(s) 349
SmlI CTYRAG 3 cut(s) 218, 349, 366
SmoI CTYRAG 3 cut(s) 218, 349, 366
SnaBI TACGTA 1 cut(s) 174
Sse9I AATT 2 cut(s) 32, 82
SspI AATATT 1 cut(s) 266
StyD4I CCNGG 3 cut(s) 36, 87, 92
TaiI ACGT 1 cut(s) 176
TaqI TCGA 1 cut(s) 350
TasI AATT 2 cut(s) 32, 82
TatI WGTACW 1 cut(s) 25
Tru1I TTAA 2 cut(s) 291, 403
Tru9I TTAA 2 cut(s) 291, 403
TscAI CASTG 1 cut(s) 171
TseI GCWGC 2 cut(s) 314, 398
TspDTI ATGAA 1 cut(s) 318
TspGWI ACGGA 2 cut(s) 131, 321
TspRI CASTG 1 cut(s) 171
VpaK11BI GGWCC 2 cut(s) 139, 203
XapI RAATTY 1 cut(s) 32
XhoI CTCGAG 1 cut(s) 349
ZrmI AGTACT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.