Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000440

Physical Location & Seq

Genomic Coordinates Forward (+)

41611882 .. 41612818

Gene Structure 937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013809

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAATGAAAAAGCATTTGAGGTTGCAGCCAATAGAGAAATTCTAAATTCTCCACCTGCAAAGAAAGTCCAGAAGGAGTGGACCGCTGTCAGTCCGCTACCAACTCAAACTGATGCAACTTTTCGTTCCCCTCTCGATGATAATAAACACAAGCCTACATACGAGGGACCAAAGATAAAGAATGTGGTAGAGCCGAAGCTCACTCGGCCTGAAAATAATACTATTTTAGCCATGGAAACAAATGAAAAGCTGGTTGAGGTTGGAACAGGTATAGAAGATCCAGAGCATCCTAAAGAAGTCCAAAAAGAGTGGACTTGTGCTCTTTGTCAGGTTATTTCATTGGTCTTTTTGAAATTGTGGAGCGGCACGCTCACGTTGGCAGTGCAGCAGCACCCTGCAATATCTTTTATTGCCCACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0042538 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22 zf-met

Protein Analysis

141

Amino Acids

15.71

Weight (kDa)

6.09

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica	Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis	pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis	RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata	RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora	Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa	Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha	Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana	Rw6G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	64
AccBSI	CCGCTC	1 cut(s)	363
AciI	CCGC	3 cut(s)	84, 95, 363
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	39, 46
AgsI	TTSAA	1 cut(s)	352
AluBI	AGCT	2 cut(s)	199, 250
AluI	AGCT	2 cut(s)	199, 250
Alw21I	GWGCWC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	3 cut(s)	26, 385, 388
ApoI	RAATTY	2 cut(s)	39, 46
AspS9I	GGNCC	2 cut(s)	81, 167
AvaII	GGWCC	2 cut(s)	81, 167
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	3 cut(s)	38, 397, 400
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	4 cut(s)	27, 364, 386, 389
BlsI	GCNGC	4 cut(s)	28, 365, 387, 390
Bme18I	GGWCC	2 cut(s)	81, 167
BmgT120I	GGNCC	2 cut(s)	81, 167
BmiI	GGNNCC	1 cut(s)	168
BmsI	GCATC	2 cut(s)	103, 295
BoxI	GACNNNNGTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	286
BseXI	GCAGC	3 cut(s)	38, 397, 400
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	277
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	3 cut(s)	84, 95, 363
BspANI	GGCC	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	368
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstPAI	GACNNNNGTC	1 cut(s)	86
BstV1I	GCAGC	3 cut(s)	38, 397, 400
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	81, 167
CspCI	CAANNNNNGTGG	2 cut(s)	290, 325
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	7 cut(s)	29, 154, 193, 199, 208, 230, 250
CviKI_1	RGCY	7 cut(s)	29, 154, 193, 199, 208, 230, 250
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	231
Eco47I	GGWCC	2 cut(s)	81, 167
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	235
FaiI	YATR	3 cut(s)	160, 233, 272
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	27, 364, 386, 389
FokI	GGATG	1 cut(s)	273
Fsp4HI	GCNGC	4 cut(s)	27, 364, 386, 389
GluI	GCNGC	4 cut(s)	27, 364, 386, 389
HaeIII	GGCC	1 cut(s)	208
Hin1II	CATG	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	81, 312
Hpy188III	TCNNGA	3 cut(s)	70, 134, 281
Hpy8I	GTNNAC	2 cut(s)	81, 312
HpyAV	CCTTC	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	5 cut(s)	26, 59, 116, 385, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	360
LpnPI	CCDG	8 cut(s)	69, 83, 222, 236, 252, 294, 314, 408
Lsp1109I	GCAGC	3 cut(s)	38, 397, 400
LweI	GCATC	2 cut(s)	103, 295
MaeII	ACGT	1 cut(s)	374
MalI	GATC	1 cut(s)	279
MbiI	CCGCTC	1 cut(s)	363
MboI	GATC	1 cut(s)	277
MboII	GAAGA	1 cut(s)	287
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	3 cut(s)	39, 46, 353
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	4 cut(s)	13, 141, 157, 250
MspA1I	CMGCKG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	205
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	168
NmeAIII	GCCGAG	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	64
PkrI	GCNGC	4 cut(s)	28, 365, 387, 390
PshAI	GACNNNNGTC	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	81, 167
PsuI	RGATCY	1 cut(s)	277
SatI	GCNGC	4 cut(s)	27, 364, 386, 389
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	2 cut(s)	81, 167
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	8 cut(s)	24, 58, 201, 252, 261, 271, 333, 377
SfaNI	GCATC	2 cut(s)	103, 295
SinI	GGWCC	2 cut(s)	81, 167
Sse9I	AATT	3 cut(s)	39, 46, 353
SsiI	CCGC	3 cut(s)	84, 95, 363
StyI	CCWWGG	1 cut(s)	231
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	1 cut(s)	135
TasI	AATT	3 cut(s)	39, 46, 353
TauI	GCSGC	1 cut(s)	366
TscAI	CASTG	1 cut(s)	387
TseI	GCWGC	3 cut(s)	26, 385, 388
TspDTI	ATGAA	4 cut(s)	17, 21, 258, 327
TspRI	CASTG	1 cut(s)	387
VpaK11BI	GGWCC	2 cut(s)	81, 167
XapI	RAATTY	2 cut(s)	39, 46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.