RLG00000013818

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000440
Physical Location & Seq
Forward (+)
41793065 .. 41797165
4101 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013818

Sequence Viewer

Length: 2142 bp
ATGGGCTTACTGGGTCTCGTTGGATTGGCGCTCCAATGCTTTGTTGTTCTTGCATGGCCTCTCTTTGCTCTGGTCTATCCTCTGTATTCTTCCATTAAAGCAATCGAGACAAATTCCATTACAGATACTCACAAGATAAATACGTATTGGGTCGTCTTCTCATTGATCTTGCTATTTGAACATGCTTTTATGAAGCTCCTTGAATGGTTCCTGCTCTGGCCATACATTAGGCTACTGATTGTCTTCTTTTTGGTGATGCCACATTTTGATGGTGCCTTATATGTCTATAAACACCTTATCTGTCCATGCCTCTCCATGGATCCCCAAATTGTTATCAACTTGTTCAACAAGCGGAAGGAGTCCCTTGCGAGAAATAACTTTCTCTTTGAGGTGGAGAGATATGTCAAGGAGAATGGACCTGAAGGTTTGGAAAAATTTATTGCTTGCAAGTTAACGAGGACAAATCCCAATGTAAAAGAGATCGATACAGTTTCATCCATGGATAATGAAGCGTCAAAATCCATAAAGCCATATGGTGGACAGAATGATATCAAAGCTGTGCAGGTAATGGTGAAAAAGAAGGAAACAACTGCTAGCCAAGTTAGTCAGGCAGAGCCTAATCTCACTATGAATGAAGATAAATTTTCTTCTAGGAAGATGAATGAAAAAGCCATTGAGGCTGCAGCCGACAGAGAAATTCTGAACACTCCACCTCCAAAGAAAGTTCAGAAGGAGTGGACCAGAGTCAGTCCGCTACCAACTCAAACTGATGCAACTTTTAATTCCCCTCATGGTGAAAATAAAATCAAGGCTACATACAAGGCACTGAAGATAAAGAATGAGGAAGAGCCGAAGCTCACTTGGCCTGAAAACAGTAGTGTTGCAGCCATGGAAATATATGAAAAGCCGGTTGAGGGTGGAACAGTTATAGAAGATCCAGAGCCTCCTAAACAAGTCCAGAAAGAGTGGACTTGTGCTCTGTCTCAGGTAACTACTACATGTGAAAGCAATTTGAATTCCCACCTGCAAGGGAGAAAACACAAGGCAGCATATGAGGCACTGAAAGCAGGGAACCAGGCATTTGTGCCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACCAAATAAGGAGCCAGGAAAGAGCATTCTGAACCAGTCAAAATCCATAAAGCCTAATGGTGGACAGAATGATATCAAAGCTGTGCAGGTAATGGTGAAAAAGAAGGAAACAACTGCTAGCCAAGCCTTACATGTGGTTAGTCAGGCAGAGCCTAATCTCACTGTGAATGAAGATAAATTTTCTTCTAGGAAGATGAATGAAAAATCCATTGAGGCTGCAGCCGACAGAGAAATTCTGAATACTCCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCAGAGTCAGTCCGCTACCAACTCAAACTGATGCAACTTTTAATTCCCCTCTCGGTGATAATAAAAGCAAGGCTACATACAAGGCACTGAAGATAAAGAATGAGGAAGAGCCGAAGCTCACTGGGCCAGCCATGGAAATATATGAAAAGCCAGATGAGGGAACAGGTATAGAAGATCCAGAGCCTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAGGTAACTACTGCATGTGAAAGAAATATGAATTCCCACCTGCAAGGGAGAAAACACAAGGCAGCATATGAGGCACTGAAAGCAGGGAACCAGGCATTTGTGCCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACCAAATAAGGAGCCAGGAAAGAGTATTCCGAACAGTGGATCGAAACAAAAAGTTACTGTAAACGAAAATGTGCAAGGCCAGAAAAATAGTAGTCCAGCTCCAATCACAAATAAGCACTATAAACCAGAAGAGCAGGTAGTGGATGGTGTATCCAGCAATGGCCAGAAAGGGAAAATTGCTATACACGTCGAGAAGGTACAAAGTCAACAACCAAAGCCAAATGAAGTTCCAAGGGTGAAGAGTTATTGTGGCGTATGCTGTTCTGATGAGACTGACTTGCTGTCTCATCTCAACGGAAAAAAACACAAGGAAAATGTGCAAGAGTACCTAATCTGGGTTTGCAAGGATAAAAAAGCCCAGGGGCCTTTGTGA

Protein Analysis

714

Amino Acids

79.51

Weight (kDa)

8.98

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 27 - 103 7.8e-19 TB2/DP1, HVA22 family
zf-met PF12874 537 - 561 8.1e-08 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1032, 1674
Acc36I ACCTGC 5 cut(s) 553, 1032, 1204, 1674, 1894
AccB1I GGYRCC 1 cut(s) 272
AccB7I CCANNNNNTGG 1 cut(s) 536
AciI CCGC 3 cut(s) 352, 752, 1415
AclWI GGATC 5 cut(s) 314, 327, 929, 1571, 1816
AcoI YGGCCR 2 cut(s) 218, 1930
AcsI RAATTY 8 cut(s) 112, 434, 641, 696, 1015, 1304, 1359, 1657
AcuI CTGAAG 3 cut(s) 441, 848, 1511
AfaI GTAC 2 cut(s) 1968, 2096
AfiI CCNNNNNNNGG 7 cut(s) 316, 536, 914, 1187, 1559, 1805, 2104
AflIII ACRYGT 3 cut(s) 998, 1258, 1954
AgsI TTSAA 6 cut(s) 179, 203, 346, 1015, 1107, 1749
AhdI GACNNNNNGTC 1 cut(s) 2050
AjiI CACGTC 1 cut(s) 1957
AjnI CCWGG 5 cut(s) 1074, 1141, 1716, 1783, 2127
AluBI AGCT 8 cut(s) 196, 557, 856, 1103, 1208, 1519, 1745, 1868
AluI AGCT 8 cut(s) 196, 557, 856, 1103, 1208, 1519, 1745, 1868
Alw21I GWGCWC 2 cut(s) 979, 1621
Alw26I GTCTC 5 cut(s) 20, 101, 987, 2033, 2058
AlwI GGATC 5 cut(s) 314, 327, 929, 1571, 1816
AoxI GGCC 7 cut(s) 56, 218, 863, 1526, 1846, 1930, 2132
ApeKI GCWGC 7 cut(s) 680, 683, 884, 1046, 1343, 1346, 1688
ApoI RAATTY 8 cut(s) 112, 434, 641, 696, 1015, 1304, 1359, 1657
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 5 cut(s) 416, 738, 1401, 1526, 2132
AsuHPI GGTGA 6 cut(s) 265, 583, 806, 1234, 1469, 2017
AsuNHI GCTAGC 2 cut(s) 593, 1244
AvaII GGWCC 3 cut(s) 416, 738, 1401
BaeGI GKGCMC 2 cut(s) 1089, 1731
BalI TGGCCA 2 cut(s) 220, 1932
BamHI GGATCC 1 cut(s) 319
BanI GGYRCC 1 cut(s) 272
BbsI GAAGAC 2 cut(s) 148, 235
Bbv12I GWGCWC 2 cut(s) 979, 1621
BbvI GCAGC 7 cut(s) 667, 695, 896, 1058, 1330, 1358, 1700
BccI CCATC 2 cut(s) 263, 1907
BciT130I CCWGG 5 cut(s) 1076, 1143, 1718, 1785, 2129
BciVI GTATCC 1 cut(s) 1930
BcoDI GTCTC 5 cut(s) 20, 101, 987, 2033, 2058
BfaI CTAG 4 cut(s) 594, 651, 1245, 1314
BfmI CTRYAG 2 cut(s) 681, 1344
BfoI RGCGCY 1 cut(s) 32
BfuAI ACCTGC 5 cut(s) 553, 1032, 1204, 1674, 1894
BfuI GTATCC 1 cut(s) 1930
BglI GCCNNNNNGGC 1 cut(s) 677
BisI GCNGC 7 cut(s) 681, 684, 885, 1047, 1344, 1347, 1689
BlsI GCNGC 7 cut(s) 682, 685, 886, 1048, 1345, 1348, 1690
Bme1390I CCNGG 5 cut(s) 1076, 1143, 1718, 1785, 2129
Bme18I GGWCC 3 cut(s) 416, 738, 1401
BmeRI GACNNNNNGTC 1 cut(s) 2050
BmgBI CACGTC 1 cut(s) 1957
BmgT120I GGNCC 5 cut(s) 416, 738, 1401, 1526, 2132
BmiI GGNNCC 8 cut(s) 209, 274, 321, 1073, 1140, 1715, 1782, 2133
BmrFI CCNGG 5 cut(s) 1076, 1143, 1718, 1785, 2129
BmrI ACTGGG 2 cut(s) 20, 1533
BmsI GCATC 3 cut(s) 246, 760, 1423
BmtI GCTAGC 2 cut(s) 597, 1248
BmuI ACTGGG 2 cut(s) 20, 1533
BoxI GACNNNNGTC 2 cut(s) 743, 1406
BpiI GAAGAC 2 cut(s) 148, 235
Bsa29I ATCGAT 1 cut(s) 483
BsaAI YACGTR 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 7 cut(s) 315, 498, 888, 1533, 2000, 2127, 2128
BsaXI ACNNNNNCTCC 4 cut(s) 697, 727, 1360, 1390
Bsc4I CCNNNNNNNGG 7 cut(s) 316, 536, 914, 1187, 1559, 1805, 2104
Bse118I RCCGGY 1 cut(s) 907
Bse1I ACTGG 3 cut(s) 15, 1162, 1528
Bse3DI GCAATG 1 cut(s) 1933
BseBI CCWGG 5 cut(s) 1076, 1143, 1718, 1785, 2129
BseCI ATCGAT 1 cut(s) 483
BseDI CCNNGG 7 cut(s) 315, 498, 888, 1533, 2000, 2127, 2128
BseGI GGATG 4 cut(s) 494, 1118, 1760, 1918
BseLI CCNNNNNNNGG 7 cut(s) 316, 536, 914, 1187, 1559, 1805, 2104
BseMI GCAATG 1 cut(s) 1933
BseMII CTCAG 1 cut(s) 998
BseNI ACTGG 3 cut(s) 15, 1162, 1528
BseSI GKGCMC 2 cut(s) 1089, 1731
BseXI GCAGC 7 cut(s) 667, 695, 896, 1058, 1330, 1358, 1700
BseYI CCCAGC 2 cut(s) 1099, 1741
BsgI GTGCAG 2 cut(s) 581, 1232
BshFI GGCC 7 cut(s) 58, 220, 865, 1528, 1848, 1932, 2134
BshNI GGYRCC 1 cut(s) 272
BshVI ATCGAT 1 cut(s) 483
BsiHKAI GWGCWC 2 cut(s) 979, 1621
BsiSI CCGG 1 cut(s) 908
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 7 cut(s) 316, 536, 914, 1187, 1559, 1805, 2104
BsmAI GTCTC 5 cut(s) 20, 101, 987, 2033, 2058
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 1152
BsnI GGCC 7 cut(s) 58, 220, 865, 1528, 1848, 1932, 2134
Bso31I GGTCTC 1 cut(s) 20
Bsp1286I GDGCHC 4 cut(s) 979, 1089, 1621, 1731
Bsp143I GATC 6 cut(s) 165, 319, 480, 934, 1576, 1808
Bsp19I CCATGG 4 cut(s) 315, 498, 888, 1533
BspACI CCGC 3 cut(s) 352, 752, 1415
BspANI GGCC 7 cut(s) 58, 220, 865, 1528, 1848, 1932, 2134
BspCNI CTCAG 1 cut(s) 997
BspDI ATCGAT 1 cut(s) 483
BspLI GGNNCC 8 cut(s) 209, 274, 321, 1073, 1140, 1715, 1782, 2133
BspMAI CTGCAG 2 cut(s) 685, 1348
BspMI ACCTGC 5 cut(s) 553, 1032, 1204, 1674, 1894
BspOI GCTAGC 2 cut(s) 597, 1248
BspPI GGATC 5 cut(s) 314, 327, 929, 1571, 1816
BspQI GCTCTTC 3 cut(s) 840, 1503, 1893
BspT107I GGYRCC 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 1933
BsrFI RCCGGY 1 cut(s) 907
BsrI ACTGG 3 cut(s) 15, 1162, 1528
BssAI RCCGGY 1 cut(s) 907
BssECI CCNNGG 7 cut(s) 315, 498, 888, 1533, 2000, 2127, 2128
BssMI GATC 6 cut(s) 165, 319, 480, 934, 1576, 1808
BssT1I CCWWGG 5 cut(s) 315, 498, 888, 1533, 2000
Bst2UI CCWGG 5 cut(s) 1076, 1143, 1718, 1785, 2129
Bst4CI ACNGT 6 cut(s) 490, 875, 925, 1291, 1805, 1828
Bst6I CTCTTC 4 cut(s) 840, 1503, 1893, 2003
BstBAI YACGTR 1 cut(s) 144
BstC8I GCNNGC 4 cut(s) 445, 595, 1246, 1530
BstDEI CTNAG 1 cut(s) 984
BstDSI CCRYGG 4 cut(s) 315, 498, 888, 1533
BstF5I GGATG 4 cut(s) 494, 1118, 1760, 1918
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 6 cut(s) 168, 322, 483, 937, 1579, 1811
BstMAI GTCTC 5 cut(s) 20, 101, 987, 2033, 2058
BstMBI GATC 6 cut(s) 165, 319, 480, 934, 1576, 1808
BstNI CCWGG 5 cut(s) 1076, 1143, 1718, 1785, 2129
BstNSI RCATGY 4 cut(s) 185, 1002, 1262, 1644
BstPAI GACNNNNGTC 2 cut(s) 743, 1406
BstSCI CCNGG 5 cut(s) 1074, 1141, 1716, 1783, 2127
BstSFI CTRYAG 2 cut(s) 681, 1344
BstSLI GKGCMC 2 cut(s) 1089, 1731
BstSNI TACGTA 1 cut(s) 144
BstV1I GCAGC 7 cut(s) 667, 695, 896, 1058, 1330, 1358, 1700
BstV2I GAAGAC 2 cut(s) 148, 235
BstX2I RGATCY 3 cut(s) 319, 934, 1576
BstYI RGATCY 3 cut(s) 319, 934, 1576
Bsu15I ATCGAT 1 cut(s) 483
BsuI GTATCC 1 cut(s) 1930
BsuRI GGCC 7 cut(s) 58, 220, 865, 1528, 1848, 1932, 2134
BsuTUI ATCGAT 1 cut(s) 483
BtgI CCRYGG 4 cut(s) 315, 498, 888, 1533
BtrI CACGTC 1 cut(s) 1957
BtsCI GGATG 4 cut(s) 494, 1118, 1760, 1918
BtsIMutI CAGTG 7 cut(s) 824, 1058, 1287, 1487, 1521, 1700, 1810
BveI ACCTGC 5 cut(s) 553, 1032, 1204, 1674, 1894
Cac8I GCNNGC 4 cut(s) 445, 595, 1246, 1530
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 907
Cfr13I GGNCC 5 cut(s) 416, 738, 1401, 1526, 2132
ClaI ATCGAT 1 cut(s) 483
CseI GACGC 1 cut(s) 501
Csp6I GTAC 2 cut(s) 1967, 2095
CviQI GTAC 2 cut(s) 1967, 2095
DdeI CTNAG 1 cut(s) 984
DpnI GATC 6 cut(s) 167, 321, 482, 936, 1578, 1810
DpnII GATC 6 cut(s) 165, 319, 480, 934, 1576, 1808
DriI GACNNNNNGTC 1 cut(s) 2050
EaeI YGGCCR 2 cut(s) 218, 1930
Eam1104I CTCTTC 4 cut(s) 840, 1503, 1893, 2003
Eam1105I GACNNNNNGTC 1 cut(s) 2050
EarI CTCTTC 4 cut(s) 840, 1503, 1893, 2003
Eco105I TACGTA 1 cut(s) 144
Eco130I CCWWGG 5 cut(s) 315, 498, 888, 1533, 2000
Eco31I GGTCTC 1 cut(s) 20
Eco32I GATATC 2 cut(s) 550, 1201
Eco47I GGWCC 3 cut(s) 416, 738, 1401
Eco57I CTGAAG 3 cut(s) 441, 848, 1511
EcoO109I RGGNCCY 1 cut(s) 2132
EcoRI GAATTC 2 cut(s) 1015, 1657
EcoRII CCWGG 5 cut(s) 1074, 1141, 1716, 1783, 2127
EcoRV GATATC 2 cut(s) 550, 1201
EcoT14I CCWWGG 5 cut(s) 315, 498, 888, 1533, 2000
ErhI CCWWGG 5 cut(s) 315, 498, 888, 1533, 2000
FaqI GGGAC 1 cut(s) 346
FauNDI CATATG 3 cut(s) 532, 1051, 1693
Fnu4HI GCNGC 7 cut(s) 681, 684, 885, 1047, 1344, 1347, 1689
FokI GGATG 4 cut(s) 481, 1105, 1747, 1925
Fsp4HI GCNGC 7 cut(s) 681, 684, 885, 1047, 1344, 1347, 1689
FspBI CTAG 4 cut(s) 594, 651, 1245, 1314
GlaI GCGC 1 cut(s) 30
GluI GCNGC 7 cut(s) 681, 684, 885, 1047, 1344, 1347, 1689
GsaI CCCAGC 2 cut(s) 1103, 1745
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 7 cut(s) 58, 220, 865, 1528, 1848, 1932, 2134
HapII CCGG 1 cut(s) 908
HgaI GACGC 1 cut(s) 501
HhaI GCGC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 2 cut(s) 453, 1976
HindII GTYRAC 2 cut(s) 453, 1976
HinfI GANTC 3 cut(s) 359, 744, 1407
HpaI GTTAAC 1 cut(s) 453
HpaII CCGG 1 cut(s) 908
HphI GGTGA 6 cut(s) 265, 583, 806, 1234, 1469, 2017
Hpy166II GTNNAC 9 cut(s) 453, 539, 738, 969, 1190, 1401, 1611, 1831, 1976
Hpy188I TCNGA 6 cut(s) 702, 729, 1158, 1365, 1800, 2035
Hpy188III TCNNGA 7 cut(s) 106, 938, 958, 1390, 1580, 1600, 1960
Hpy8I GTNNAC 9 cut(s) 453, 539, 738, 969, 1190, 1401, 1611, 1831, 1976
Hpy99I CGWCG 1 cut(s) 1961
HpyAV CCTTC 7 cut(s) 349, 416, 574, 724, 1225, 1387, 1957
HpyCH4III ACNGT 6 cut(s) 490, 875, 925, 1291, 1805, 1828
HpyCH4IV ACGT 2 cut(s) 143, 1956
HpyF3I CTNAG 1 cut(s) 984
HpySE526I ACGT 2 cut(s) 143, 1956
HspAI GCGC 1 cut(s) 29
KspAI GTTAAC 1 cut(s) 453
Kzo9I GATC 6 cut(s) 165, 319, 480, 934, 1576, 1808
LguI GCTCTTC 3 cut(s) 840, 1503, 1893
LmnI GCTCC 5 cut(s) 36, 201, 1138, 1780, 1873
Lsp1109I GCAGC 7 cut(s) 667, 695, 896, 1058, 1330, 1358, 1700
LweI GCATC 3 cut(s) 246, 760, 1423
MaeI CTAG 4 cut(s) 594, 651, 1245, 1314
MaeII ACGT 2 cut(s) 143, 1956
MaeIII GTNAC 3 cut(s) 988, 1630, 1822
MalI GATC 6 cut(s) 167, 321, 482, 936, 1578, 1810
MboI GATC 6 cut(s) 165, 319, 480, 934, 1576, 1808
MflI RGATCY 3 cut(s) 319, 934, 1576
MhlI GDGCHC 4 cut(s) 979, 1089, 1621, 1731
MlsI TGGCCA 2 cut(s) 220, 1932
MluNI TGGCCA 2 cut(s) 220, 1932
MlyI GAGTC 3 cut(s) 368, 753, 1416
Mox20I TGGCCA 2 cut(s) 220, 1932
MscI TGGCCA 2 cut(s) 220, 1932
MseI TTAA 4 cut(s) 96, 452, 780, 1443
MslI CAYNNNNRTG 1 cut(s) 267
Msp20I TGGCCA 2 cut(s) 220, 1932
MspI CCGG 1 cut(s) 908
MspR9I CCNGG 5 cut(s) 1076, 1143, 1718, 1785, 2129
Mva1269I GAATGC 1 cut(s) 1152
MvaI CCWGG 5 cut(s) 1076, 1143, 1718, 1785, 2129
NcoI CCATGG 4 cut(s) 315, 498, 888, 1533
NdeI CATATG 3 cut(s) 532, 1051, 1693
NdeII GATC 6 cut(s) 165, 319, 480, 934, 1576, 1808
NheI GCTAGC 2 cut(s) 593, 1244
NlaIV GGNNCC 8 cut(s) 209, 274, 321, 1073, 1140, 1715, 1782, 2133
NspI RCATGY 4 cut(s) 185, 1002, 1262, 1644
PaqCI CACCTGC 2 cut(s) 1032, 1674
PasI CCCWGGG 1 cut(s) 2128
PciI ACATGT 2 cut(s) 998, 1258
PciSI GCTCTTC 3 cut(s) 840, 1503, 1893
PctI GAATGC 1 cut(s) 1152
PflMI CCANNNNNTGG 1 cut(s) 536
PkrI GCNGC 7 cut(s) 682, 685, 886, 1048, 1345, 1348, 1690
PleI GAGTC 3 cut(s) 367, 752, 1415
PpsI GAGTC 3 cut(s) 367, 752, 1415
Ppu21I YACGTR 1 cut(s) 144
PscI ACATGT 2 cut(s) 998, 1258
PshAI GACNNNNGTC 2 cut(s) 743, 1406
Psp6I CCWGG 5 cut(s) 1074, 1141, 1716, 1783, 2127
PspFI CCCAGC 2 cut(s) 1099, 1741
PspGI CCWGG 5 cut(s) 1074, 1141, 1716, 1783, 2127
PspN4I GGNNCC 8 cut(s) 209, 274, 321, 1073, 1140, 1715, 1782, 2133
PspPI GGNCC 5 cut(s) 416, 738, 1401, 1526, 2132
PstI CTGCAG 2 cut(s) 685, 1348
PsuI RGATCY 3 cut(s) 319, 934, 1576
RsaI GTAC 2 cut(s) 1968, 2096
RsaNI GTAC 2 cut(s) 1967, 2095
RseI CAYNNNNRTG 1 cut(s) 267
SapI GCTCTTC 3 cut(s) 840, 1503, 1893
SaqAI TTAA 4 cut(s) 96, 452, 780, 1443
SatI GCNGC 7 cut(s) 681, 684, 885, 1047, 1344, 1347, 1689
Sau3AI GATC 6 cut(s) 165, 319, 480, 934, 1576, 1808
Sau96I GGNCC 5 cut(s) 416, 738, 1401, 1526, 2132
SchI GAGTC 3 cut(s) 368, 753, 1416
ScrFI CCNGG 5 cut(s) 1076, 1143, 1718, 1785, 2129
SduI GDGCHC 4 cut(s) 979, 1089, 1621, 1731
SfaNI GCATC 3 cut(s) 246, 760, 1423
SfcI CTRYAG 2 cut(s) 681, 1344
SinI GGWCC 3 cut(s) 416, 738, 1401
SmiMI CAYNNNNRTG 1 cut(s) 267
SnaBI TACGTA 1 cut(s) 144
SsiI CCGC 3 cut(s) 352, 752, 1415
SspMI CTAG 4 cut(s) 594, 651, 1245, 1314
StyD4I CCNGG 5 cut(s) 1074, 1141, 1716, 1783, 2127
StyI CCWWGG 5 cut(s) 315, 498, 888, 1533, 2000
TaaI ACNGT 6 cut(s) 490, 875, 925, 1291, 1805, 1828
TaiI ACGT 2 cut(s) 146, 1959
TaqI TCGA 4 cut(s) 105, 483, 1811, 1959
Tru1I TTAA 4 cut(s) 96, 452, 780, 1443
Tru9I TTAA 4 cut(s) 96, 452, 780, 1443
TscAI CASTG 7 cut(s) 831, 1065, 1294, 1494, 1528, 1707, 1810
TseI GCWGC 7 cut(s) 680, 683, 884, 1046, 1343, 1346, 1688
TspGWI ACGGA 1 cut(s) 2079
TspRI CASTG 7 cut(s) 831, 1065, 1294, 1494, 1528, 1707, 1810
Van91I CCANNNNNTGG 1 cut(s) 536
VpaK11BI GGWCC 3 cut(s) 416, 738, 1401
XapI RAATTY 8 cut(s) 112, 434, 641, 696, 1015, 1304, 1359, 1657
XceI RCATGY 4 cut(s) 185, 1002, 1262, 1644
XspI CTAG 4 cut(s) 594, 651, 1245, 1314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.