Rorug06G0053000

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000440
Physical Location & Seq
Forward (+)
7395699 .. 7398241
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0053000.1

Sequence Viewer

Length: 795 bp
ATGTCCGGCGGCGCTCTGAGAAGAAACACTACCCTCACCCGCCTCATACACAAGCACTCCATCACCGACCACCGCACACCTCCGACGCCGGGCCTCAAGGCCCAACTCCAGTCCAAAGCCTACCTCCGCGCCCCCAATGTGTTCCGTAAAGCCAAAGACTACGACCTCTCTCCTCCCTCCCTCTTCTCCTCCGCCTTCTTCTCCGCCAAGTCCTCCTCTTCCTCCGCCGCCGCCGCCGCCACCGCCTCCACCGGCCTCGTCGGCTGGTATCTGGGCCTCGTCAAGAACCGGCCCGTTCTCACCAAGAGCGTCACCGCCGCCCTCATCTACACCGCCGCCGATTTGTCCTCCCAGACTATAGCGAAAGCGGATACTTATGATCCTGTGAGGACATTGCGGATGGCTGGATATGGGATGGTGATTCTAGGGCCGTCGCTGCATTTCTGGTTCAATTTCATGGCCAAAACGTTTCCGAAGCGGGATATGTTTTCGACATTGAAGAAAATGGCTCTGGGGCAGGGACTTTATGGACCTACTATGACTGTTGTGTTCTTCTCTGTGAATGCATTTTTACAAGGTGAAAATGGTGGAGAAGTTTTTGATCGTTTAAAGCGAGACTTGGTCCCTACATTGTTAAGTGGTGTTATGTATTGGCCAGTGTGTGATTTTATCACATTCAGATTCATTCCTGTCCATTTGCAGACATTAGTGAGCAATGGATTTTCATATCTGTGGACCATTTATTTGACATACATGGCAAGCCTGGAGAAAGCAAGTGCAATAGCTAGTGATTGA

Protein Analysis

264

Amino Acids

29.04

Weight (kDa)

9.93

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 189 - 249 5.9e-19 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 129
AclI AACGTT 1 cut(s) 467
AclWI GGATC 1 cut(s) 374
AcoI YGGCCR 2 cut(s) 459, 653
AcyI GRCGYC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 2 cut(s) 451, 499
AjnI CCWGG 1 cut(s) 762
AluBI AGCT 1 cut(s) 785
AluI AGCT 1 cut(s) 785
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 1 cut(s) 374
AoxI GGCC 8 cut(s) 91, 99, 253, 274, 290, 428, 459, 653
ApeKI GCWGC 1 cut(s) 436
ArsI GACNNNNNNTTYG 2 cut(s) 727, 759
AspLEI GCGC 2 cut(s) 14, 131
AspS9I GGNCC 8 cut(s) 91, 100, 274, 291, 428, 530, 622, 735
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 6 cut(s) 28, 55, 292, 304, 430, 590
AvaII GGWCC 3 cut(s) 530, 622, 735
BalI TGGCCA 2 cut(s) 461, 655
BarI GAAGNNNNNNTAC 2 cut(s) 13, 45
BbvI GCAGC 1 cut(s) 423
BccI CCATC 3 cut(s) 68, 394, 409
BceAI ACGGC 1 cut(s) 415
BciT130I CCWGG 1 cut(s) 764
BciVI GTATCC 1 cut(s) 364
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 2 cut(s) 425, 786
BfmI CTRYAG 1 cut(s) 357
BfoI RGCGCY 1 cut(s) 15
BfuI GTATCC 1 cut(s) 364
BglI GCCNNNNNGGC 1 cut(s) 261
BisI GCNGC 8 cut(s) 10, 228, 231, 234, 237, 318, 336, 437
BlsI GCNGC 8 cut(s) 11, 229, 232, 235, 238, 319, 337, 438
Bme1390I CCNGG 2 cut(s) 90, 764
Bme18I GGWCC 3 cut(s) 530, 622, 735
BmgT120I GGNCC 8 cut(s) 91, 100, 274, 291, 428, 530, 622, 735
BmiI GGNNCC 1 cut(s) 624
BmrFI CCNGG 2 cut(s) 90, 764
BpmI CTGGAG 2 cut(s) 92, 785
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 2 cut(s) 251, 288
Bse1I ACTGG 2 cut(s) 109, 656
Bse3DI GCAATG 2 cut(s) 392, 721
BseBI CCWGG 1 cut(s) 764
BseGI GGATG 2 cut(s) 405, 420
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 2 cut(s) 392, 721
BseMII CTCAG 1 cut(s) 8
BseNI ACTGG 2 cut(s) 109, 656
BseRI GAGGAG 3 cut(s) 162, 178, 205
BseXI GCAGC 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 8 cut(s) 93, 101, 255, 276, 292, 430, 461, 655
BsiSI CCGG 4 cut(s) 6, 89, 252, 289
BslFI GGGAC 2 cut(s) 534, 608
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 609
BsmFI GGGAC 2 cut(s) 534, 608
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 8 cut(s) 93, 101, 255, 276, 292, 430, 461, 655
Bsp143I GATC 2 cut(s) 379, 601
BspANI GGCC 8 cut(s) 93, 101, 255, 276, 292, 430, 461, 655
BspCNI CTCAG 1 cut(s) 9
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 624
BspPI GGATC 1 cut(s) 374
BsrDI GCAATG 2 cut(s) 392, 721
BsrFI RCCGGY 2 cut(s) 251, 288
BsrI ACTGG 2 cut(s) 109, 656
BssAI RCCGGY 2 cut(s) 251, 288
BssMI GATC 2 cut(s) 379, 601
BssNI GRCGYC 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 764
Bst4CI ACNGT 1 cut(s) 544
Bst6I CTCTTC 2 cut(s) 188, 223
BstACI GRCGYC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 760
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 405, 420
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 131
BstKTI GATC 2 cut(s) 382, 604
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 2 cut(s) 379, 601
BstMWI GCNNNNNNNGC 5 cut(s) 233, 236, 242, 261, 436
BstNI CCWGG 1 cut(s) 764
BstSCI CCNGG 2 cut(s) 88, 762
BstSFI CTRYAG 1 cut(s) 357
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 423
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 8 cut(s) 93, 101, 255, 276, 292, 430, 461, 655
BtsCI GGATG 2 cut(s) 405, 420
BtsIMutI CAGTG 1 cut(s) 663
Cac8I GCNNGC 1 cut(s) 760
CfoI GCGC 2 cut(s) 14, 131
Cfr10I RCCGGY 2 cut(s) 251, 288
Cfr13I GGNCC 8 cut(s) 91, 100, 274, 291, 428, 530, 622, 735
CseI GACGC 2 cut(s) 94, 298
CviAII CATG 2 cut(s) 457, 754
DdeI CTNAG 1 cut(s) 17
DpnI GATC 2 cut(s) 381, 603
DpnII GATC 2 cut(s) 379, 601
DraI TTTAAA 1 cut(s) 609
EaeI YGGCCR 2 cut(s) 459, 653
Eam1104I CTCTTC 2 cut(s) 188, 223
EarI CTCTTC 2 cut(s) 188, 223
EciI GGCGGA 3 cut(s) 181, 193, 214
Eco47I GGWCC 3 cut(s) 530, 622, 735
EcoRII CCWGG 1 cut(s) 762
EcoT22I ATGCAT 1 cut(s) 568
FaeI CATG 2 cut(s) 460, 757
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 2 cut(s) 534, 608
FatI CATG 2 cut(s) 456, 753
FauI CCCGC 2 cut(s) 47, 471
Fnu4HI GCNGC 8 cut(s) 10, 228, 231, 234, 237, 318, 336, 437
FokI GGATG 2 cut(s) 412, 427
Fsp4HI GCNGC 8 cut(s) 10, 228, 231, 234, 237, 318, 336, 437
FspBI CTAG 2 cut(s) 425, 786
GlaI GCGC 2 cut(s) 13, 130
GluI GCNGC 8 cut(s) 10, 228, 231, 234, 237, 318, 336, 437
GsuI CTGGAG 2 cut(s) 92, 785
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 8 cut(s) 93, 101, 255, 276, 292, 430, 461, 655
HapII CCGG 4 cut(s) 6, 89, 252, 289
HgaI GACGC 2 cut(s) 94, 298
HhaI GCGC 2 cut(s) 14, 131
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 2 cut(s) 460, 757
Hin6I GCGC 2 cut(s) 12, 129
HinP1I GCGC 2 cut(s) 12, 129
HinfI GANTC 2 cut(s) 421, 681
HpaII CCGG 4 cut(s) 6, 89, 252, 289
HphI GGTGA 6 cut(s) 28, 55, 292, 304, 430, 590
Hpy166II GTNNAC 1 cut(s) 735
Hpy188I TCNGA 4 cut(s) 18, 84, 474, 680
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 735
Hpy99I CGWCG 3 cut(s) 88, 263, 436
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 4 cut(s) 439, 566, 700, 779
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 236, 242, 261, 436
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 467
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 2 cut(s) 460, 757
HspAI GCGC 2 cut(s) 12, 129
Kzo9I GATC 2 cut(s) 379, 601
Lsp1109I GCAGC 1 cut(s) 423
MaeI CTAG 2 cut(s) 425, 786
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 381, 603
MboI GATC 2 cut(s) 379, 601
MboII GAAGA 6 cut(s) 33, 175, 190, 210, 511, 544
MlsI TGGCCA 2 cut(s) 461, 655
MluCI AATT 1 cut(s) 451
MluNI TGGCCA 2 cut(s) 461, 655
MmeI TCCRAC 1 cut(s) 107
Mox20I TGGCCA 2 cut(s) 461, 655
Mph1103I ATGCAT 1 cut(s) 568
MscI TGGCCA 2 cut(s) 461, 655
MseI TTAA 2 cut(s) 608, 635
MslI CAYNNNNRTG 1 cut(s) 730
Msp20I TGGCCA 2 cut(s) 461, 655
MspI CCGG 4 cut(s) 6, 89, 252, 289
MspR9I CCNGG 2 cut(s) 90, 764
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 1 cut(s) 764
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 5 cut(s) 233, 236, 242, 261, 436
NciI CCSGG 1 cut(s) 90
NdeII GATC 2 cut(s) 379, 601
NlaIII CATG 2 cut(s) 460, 757
NlaIV GGNNCC 1 cut(s) 624
NmuCI GTSAC 1 cut(s) 310
NsiI ATGCAT 1 cut(s) 568
PcsI WCGNNNNNNNCGW 1 cut(s) 610
PctI GAATGC 1 cut(s) 568
PfeI GAWTC 2 cut(s) 421, 681
PflFI GACNNNGTC 1 cut(s) 620
PkrI GCNGC 8 cut(s) 11, 229, 232, 235, 238, 319, 337, 438
Psp1406I AACGTT 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 762
PspGI CCWGG 1 cut(s) 762
PspN4I GGNNCC 1 cut(s) 624
PspPI GGNCC 8 cut(s) 91, 100, 274, 291, 428, 530, 622, 735
PsyI GACNNNGTC 1 cut(s) 620
RseI CAYNNNNRTG 1 cut(s) 730
SaqAI TTAA 2 cut(s) 608, 635
SatI GCNGC 8 cut(s) 10, 228, 231, 234, 237, 318, 336, 437
Sau3AI GATC 2 cut(s) 379, 601
Sau96I GGNCC 8 cut(s) 91, 100, 274, 291, 428, 530, 622, 735
ScrFI CCNGG 2 cut(s) 90, 764
SetI ASST 7 cut(s) 82, 126, 168, 470, 535, 580, 787
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 3 cut(s) 530, 622, 735
SmiMI CAYNNNNRTG 1 cut(s) 730
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 451
SspMI CTAG 2 cut(s) 425, 786
StyD4I CCNGG 2 cut(s) 88, 762
TaaI ACNGT 1 cut(s) 544
TaiI ACGT 1 cut(s) 470
TaqI TCGA 1 cut(s) 491
TasI AATT 1 cut(s) 451
TauI GCSGC 7 cut(s) 12, 230, 233, 236, 239, 320, 338
TfiI GAWTC 2 cut(s) 421, 681
Tru1I TTAA 2 cut(s) 608, 635
Tru9I TTAA 2 cut(s) 608, 635
TscAI CASTG 1 cut(s) 663
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 436
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 445, 673, 714
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 1 cut(s) 663
Tth111I GACNNNGTC 1 cut(s) 620
VpaK11BI GGWCC 3 cut(s) 530, 622, 735
XspI CTAG 2 cut(s) 425, 786
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.