Rmu_sc0000918.1_g000019

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000918.1
OG0000440
Physical Location & Seq
Forward (+)
84122 .. 93784
9663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000918.1_g000019.1.cds

Sequence Viewer

Length: 2520 bp
atgatcacggggaggaggagatcacgaaaatgggaaggatcagccgaggggacgccggaaaaatggaaatccggccgggtcaccgatcggaagctgggtggcttcgatctggggataggtacatcgacggggcaaggtgataccataggcaggctttacgtgcgacggcaagctcggggaaggccgggtcgtggccggaggaagccggaggagagagaaacgtccggatcgggtcgccggggagtctaccaccgggatctaaagccgaaaaacctcctcctagatgaagatggcaacttgaaggtcactaatttcgggttcagtgctttctccgagcacctaaagcaagacgggctcttgcacaccacttgtggcatgccggtttacgtggcgctagaggtgatagggaagaagggttacgacgaagccaaagtggatctctggtcatttggagttattctttatgtgcttctggttgggtttgtgccatttcaagatgacgatttggtctccatgtatagaaagaagatctacagggggagacttcaaatgccccaccttggttttcttatggaagactgctctgatcatttcgctctcggaagggttcgatttgtctcctatgttcgaggagaaggaggagctgagattcgctatgacggggtcggcaagcaacggttttcgaaacttctgtttcgacaggcggcggcgcacttcccttgggcaaggcggcgttcgtggtttcattccaaaactagtttggacggtgctgggatcggcggtgttttgatcacctttgtctgggtggttacggatcagagaggggcaatcgtgtcaaggtctgcgtcacagctacttcacaggcgttctgcgaagggcggcaagtcgctgctcttcagacgattttctacaggtcgatctgggagggaaggtaggatgatgggctcagctccgtttcgggtaaccaaggcaggccaagttttggcccaagctttggtggaacggccggagtcggctgcccgtagccatacgaagacgctgaagctcaagatgggcttactgggtcttgttggatttgcgctccaatgctttggtgttcttgcatggcctctctttgctctggtctatcctctgtattcttccattagagcaatcgagacaaattccattacagatactcacaagataaatacttattgggttgtcttctcattgatcttgctatttgagcatgcttttatgaagcttcttgaatggttcctgctctggccatacattaggctactgattgtcttctttttggtgatgccacattttgatggtgccttatatgtctataaacaccttatctgtccatgcctctccatggatccccaaattgttatcaactcattcaagaagcggaaggagtcccttgtgagagataactttctctatgaggtggagagatatgtaaaggagaatggacctgaaagtttggaaaaatttattccttgcaagtcaacaaggacaaatctcgatgtaaaagagttgaatgcagtttcatccatggataatgaagcgtcaaaatccttaaagccaaatggtggacagaatgatatcaaagctgtgcaggtaatggcaaaaaagaaggaaacaactgctagccaagttagtcaggcagagcctaatctcactgtgaatgaagatggattttcttctaggaagatgaatgaaaaagtcatcgaagttgcagccgacagggaaattctgaagactccgcctccaatgagagtccagaaggagtggaccacagtcaatccggtgcaaactcaaactgatgcaactttgaattcccctctcgatgataataaacacaaggctacatacgaggcactgaacataaagaatgaggcagagcctaagctcactttccctgaaaaccgtactattgcaggtatggaagatccagagtctcctaaagaagtccagaaagagtggacttgtgctctctgtcaggtaactacttcaagtgaaagcattttgaattcccacctgcaagggagaagacacaaggcagcatatgaggcactgaaagcaaggaaccaggcagttgtgtccaagattgccccagcttcaactgcagaaacatccaatcaaccgaataaggagccaggaaagagtattccgagcagtggatcaaaacaaaaagttcctgtaagtgaaaatgtgcaaggccagaaaaatagtagtccagctccaatcacaaagaagcaccacaaacagaaagaggagcacgcagacggtgtatccagcaatggccagaaagggaaaattcctatacacgtcgagaaggtacaaagtcaacaaacgaagccaaataaagttccaaggctgaagagttctcctttgtggtgcgcaatttgtagcatacgctgtcctggtgagattgacttgctgtctcatctcaacggaaaaaaacacaaggaaaaggtgcaagaactactagagaacctaatcaagcccagggaccctacgtaa

Protein Analysis

839

Amino Acids

94.18

Weight (kDa)

9.74

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2043
AasI GACNNNNNNGTC 1 cut(s) 506
Acc16I TGCGCA 1 cut(s) 2398
Acc36I ACCTGC 3 cut(s) 1603, 1925, 2043
AccB1I GGYRCC 1 cut(s) 1322
AccB7I CCANNNNNTGG 3 cut(s) 982, 994, 1586
AccI GTMKAC 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 224
AciI CCGC 7 cut(s) 704, 707, 730, 780, 879, 1402, 1760
AcoI YGGCCR 5 cut(s) 73, 193, 1004, 1268, 2299
AcsI RAATTY 6 cut(s) 1162, 1484, 1746, 1831, 2026, 2313
AcuI CTGAAG 4 cut(s) 880, 1061, 1772, 2396
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 3 cut(s) 121, 1927, 2337
AfiI CCNNNNNNNGG 9 cut(s) 150, 191, 560, 801, 982, 994, 1366, 1586, 2174
AflIII ACRYGT 1 cut(s) 2323
AhdI GACNNNNNGTC 1 cut(s) 2437
AhlI ACTAGT 1 cut(s) 755
AjiI CACGTC 1 cut(s) 2326
AjnI CCWGG 4 cut(s) 2085, 2152, 2419, 2504
Alw21I GWGCWC 3 cut(s) 339, 1990, 2277
Alw26I GTCTC 6 cut(s) 514, 535, 622, 1151, 1959, 2445
Ama87I CYCGRG 1 cut(s) 174
Aor13HI TCCGGA 1 cut(s) 224
ApeKI GCWGC 4 cut(s) 889, 1016, 1733, 2057
ApoI RAATTY 6 cut(s) 1162, 1484, 1746, 1831, 2026, 2313
AspLEI GCGC 4 cut(s) 394, 712, 1081, 2399
AspS9I GGNCC 4 cut(s) 985, 1466, 1788, 2509
AsuC2I CCSGG 4 cut(s) 77, 186, 239, 254
AsuHPI GGTGA 6 cut(s) 73, 149, 412, 784, 1315, 2435
AsuII TTCGAA 1 cut(s) 683
AsuNHI GCTAGC 1 cut(s) 1643
AvaI CYCGRG 1 cut(s) 174
AvaII GGWCC 3 cut(s) 1466, 1788, 2509
BalI TGGCCA 2 cut(s) 1270, 2301
BamHI GGATCC 1 cut(s) 1369
BanI GGYRCC 1 cut(s) 1322
BanII GRGCYC 2 cut(s) 357, 947
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BbsI GAAGAC 6 cut(s) 582, 1040, 1198, 1285, 1760, 2053
Bbv12I GWGCWC 3 cut(s) 339, 1990, 2277
BbvI GCAGC 4 cut(s) 876, 1003, 1745, 2069
BccI CCATC 5 cut(s) 284, 934, 1045, 1313, 1682
BceAI ACGGC 2 cut(s) 182, 1019
BciT130I CCWGG 4 cut(s) 2087, 2154, 2421, 2506
BciVI GTATCC 1 cut(s) 2299
BclI TGATCA 3 cut(s) 3, 586, 789
BcnI CCSGG 4 cut(s) 77, 186, 239, 254
BcoDI GTCTC 6 cut(s) 514, 535, 622, 1151, 1959, 2445
BcuI ACTAGT 1 cut(s) 755
BfaI CTAG 6 cut(s) 281, 395, 756, 1644, 1701, 2486
BfmI CTRYAG 3 cut(s) 532, 909, 2121
BfoI RGCGCY 1 cut(s) 395
BfuAI ACCTGC 3 cut(s) 1603, 1925, 2043
BfuI GTATCC 1 cut(s) 2299
BglII AGATCT 1 cut(s) 528
BisI GCNGC 8 cut(s) 705, 708, 731, 880, 890, 1017, 1734, 2058
BlpI GCTNAGC 1 cut(s) 946
BlsI GCNGC 8 cut(s) 706, 709, 732, 881, 891, 1018, 1735, 2059
Bme1390I CCNGG 8 cut(s) 77, 186, 239, 254, 2087, 2154, 2421, 2506
Bme18I GGWCC 3 cut(s) 1466, 1788, 2509
BmeRI GACNNNNNGTC 1 cut(s) 2437
BmeT110I CYCGRG 1 cut(s) 174
BmgBI CACGTC 1 cut(s) 2326
BmgT120I GGNCC 4 cut(s) 985, 1466, 1788, 2509
BmiI GGNNCC 7 cut(s) 1259, 1324, 1371, 2084, 2151, 2510, 2511
BmrFI CCNGG 8 cut(s) 77, 186, 239, 254, 2087, 2154, 2421, 2506
BmrI ACTGGG 1 cut(s) 1070
BmsI GCATC 2 cut(s) 1296, 1810
BmtI GCTAGC 1 cut(s) 1647
BmuI ACTGGG 1 cut(s) 1070
BoxI GACNNNNGTC 1 cut(s) 1793
BpiI GAAGAC 6 cut(s) 582, 1040, 1198, 1285, 1760, 2053
Bpu10I CCTNAGC 1 cut(s) 1902
Bpu1102I GCTNAGC 1 cut(s) 946
Bpu14I TTCGAA 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 1031
BpuMI CCSGG 4 cut(s) 77, 186, 239, 254
BsaAI YACGTR 3 cut(s) 160, 388, 2517
BsaHI GRCGYC 1 cut(s) 53
BsaI GGTCTC 1 cut(s) 514
BsaWI WCCGGW 2 cut(s) 224, 1801
BsaXI ACNNNNNCTCC 4 cut(s) 916, 946, 1747, 1777
Bsc4I CCNNNNNNNGG 9 cut(s) 150, 191, 560, 801, 982, 994, 1366, 1586, 2174
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 1065
Bse3DI GCAATG 1 cut(s) 2302
BseAI TCCGGA 1 cut(s) 224
BseBI CCWGG 4 cut(s) 2087, 2154, 2421, 2506
BseGI GGATG 3 cut(s) 942, 1544, 2129
BseLI CCNNNNNNNGG 9 cut(s) 150, 191, 560, 801, 982, 994, 1366, 1586, 2174
BseMI GCAATG 1 cut(s) 2302
BseMII CTCAG 2 cut(s) 636, 960
BseNI ACTGG 1 cut(s) 1065
BseRI GAGGAG 7 cut(s) 28, 31, 224, 266, 645, 654, 2285
BseX3I CGGCCG 2 cut(s) 73, 1004
BseXI GCAGC 4 cut(s) 876, 1003, 1745, 2069
BseYI CCCAGC 3 cut(s) 94, 770, 2110
BsgI GTGCAG 1 cut(s) 1631
Bsh1285I CGRYCG 3 cut(s) 76, 88, 1007
BshNI GGYRCC 1 cut(s) 1322
BsiEI CGRYCG 3 cut(s) 76, 88, 1007
BsiHKAI GWGCWC 3 cut(s) 339, 1990, 2277
BsiHKCI CYCGRG 1 cut(s) 174
BslFI GGGAC 2 cut(s) 64, 1396
BslI CCNNNNNNNGG 9 cut(s) 150, 191, 560, 801, 982, 994, 1366, 1586, 2174
BsmAI GTCTC 6 cut(s) 514, 535, 622, 1151, 1959, 2445
BsmFI GGGAC 2 cut(s) 64, 1396
BsmI GAATGC 1 cut(s) 1540
Bso31I GGTCTC 1 cut(s) 514
BsoBI CYCGRG 1 cut(s) 174
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 5 cut(s) 339, 357, 947, 1990, 2277
Bsp13I TCCGGA 1 cut(s) 224
Bsp1720I GCTNAGC 1 cut(s) 946
Bsp19I CCATGG 2 cut(s) 1365, 1548
BspACI CCGC 7 cut(s) 704, 707, 730, 780, 879, 1402, 1760
BspCNI CTCAG 2 cut(s) 637, 959
BspEI TCCGGA 1 cut(s) 224
BspLI GGNNCC 7 cut(s) 1259, 1324, 1371, 2084, 2151, 2510, 2511
BspMAI CTGCAG 1 cut(s) 2125
BspMI ACCTGC 3 cut(s) 1603, 1925, 2043
BspOI GCTAGC 1 cut(s) 1647
BspQI GCTCTTC 1 cut(s) 899
BspT104I TTCGAA 1 cut(s) 683
BspT107I GGYRCC 1 cut(s) 1322
BspTNI GGTCTC 1 cut(s) 514
BsrDI GCAATG 1 cut(s) 2302
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 1 cut(s) 1065
BssAI RCCGGY 1 cut(s) 379
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 6 cut(s) 559, 719, 966, 1365, 1548, 2369
Bst2UI CCWGG 4 cut(s) 2087, 2154, 2421, 2506
Bst4CI ACNGT 6 cut(s) 678, 767, 1678, 1795, 1925, 2285
Bst6I CTCTTC 2 cut(s) 899, 2372
BstACI GRCGYC 1 cut(s) 53
BstBAI YACGTR 3 cut(s) 160, 388, 2517
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 8 cut(s) 152, 171, 377, 671, 973, 1233, 1645, 2277
BstDEI CTNAG 3 cut(s) 645, 946, 1902
BstDSI CCRYGG 2 cut(s) 1365, 1548
BstEII GGTNACC 2 cut(s) 79, 961
BstF5I GGATG 3 cut(s) 942, 1544, 2129
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 4 cut(s) 394, 712, 1081, 2399
BstMAI GTCTC 6 cut(s) 514, 535, 622, 1151, 1959, 2445
BstMCI CGRYCG 3 cut(s) 76, 88, 1007
BstMWI GCNNNNNNNGC 7 cut(s) 160, 343, 352, 1228, 2066, 2075, 2120
BstNI CCWGG 4 cut(s) 2087, 2154, 2421, 2506
BstNSI RCATGY 2 cut(s) 379, 1235
BstPAI GACNNNNGTC 1 cut(s) 1793
BstPI GGTNACC 2 cut(s) 79, 961
BstSCI CCNGG 8 cut(s) 75, 184, 237, 252, 2085, 2152, 2419, 2504
BstSFI CTRYAG 3 cut(s) 532, 909, 2121
BstSNI TACGTA 1 cut(s) 2517
BstV1I GCAGC 4 cut(s) 876, 1003, 1745, 2069
BstV2I GAAGAC 6 cut(s) 582, 1040, 1198, 1285, 1760, 2053
BstX2I RGATCY 5 cut(s) 256, 436, 528, 1369, 1945
BstXI CCANNNNNNTGG 1 cut(s) 1091
BstYI RGATCY 5 cut(s) 256, 436, 528, 1369, 1945
BstZI CGGCCG 2 cut(s) 73, 1004
BsuI GTATCC 1 cut(s) 2299
BtgI CCRYGG 2 cut(s) 1365, 1548
BtrI CACGTC 1 cut(s) 2326
BtsCI GGATG 3 cut(s) 942, 1544, 2129
BtsI GCAGTG 1 cut(s) 2179
BtsIMutI CAGTG 5 cut(s) 328, 1674, 1874, 2069, 2179
BveI ACCTGC 3 cut(s) 1603, 1925, 2043
Cac8I GCNNGC 8 cut(s) 152, 171, 377, 671, 973, 1233, 1645, 2277
CfoI GCGC 4 cut(s) 394, 712, 1081, 2399
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 4 cut(s) 985, 1466, 1788, 2509
CseI GACGC 4 cut(s) 61, 834, 1045, 1551
Csp6I GTAC 3 cut(s) 120, 1926, 2336
CviAII CATG 7 cut(s) 376, 514, 1104, 1232, 1356, 1366, 1549
CviQI GTAC 3 cut(s) 120, 1926, 2336
DdeI CTNAG 3 cut(s) 645, 946, 1902
DrdI GACNNNNNNGTC 1 cut(s) 506
DriI GACNNNNNGTC 1 cut(s) 2437
DseDI GACNNNNNNGTC 1 cut(s) 506
EaeI YGGCCR 5 cut(s) 73, 193, 1004, 1268, 2299
EagI CGGCCG 2 cut(s) 73, 1004
Eam1104I CTCTTC 2 cut(s) 899, 2372
Eam1105I GACNNNNNGTC 1 cut(s) 2437
EarI CTCTTC 2 cut(s) 899, 2372
EciI GGCGGA 1 cut(s) 1749
EclXI CGGCCG 2 cut(s) 73, 1004
Eco105I TACGTA 1 cut(s) 2517
Eco130I CCWWGG 6 cut(s) 559, 719, 966, 1365, 1548, 2369
Eco24I GRGCYC 2 cut(s) 357, 947
Eco31I GGTCTC 1 cut(s) 514
Eco32I GATATC 1 cut(s) 1600
Eco47I GGWCC 3 cut(s) 1466, 1788, 2509
Eco52I CGGCCG 2 cut(s) 73, 1004
Eco57I CTGAAG 4 cut(s) 880, 1061, 1772, 2396
Eco88I CYCGRG 1 cut(s) 174
Eco91I GGTNACC 2 cut(s) 79, 961
EcoO109I RGGNCCY 1 cut(s) 2509
EcoO65I GGTNACC 2 cut(s) 79, 961
EcoRI GAATTC 2 cut(s) 1831, 2026
EcoRII CCWGG 4 cut(s) 2085, 2152, 2419, 2504
EcoRV GATATC 1 cut(s) 1600
EcoT14I CCWWGG 6 cut(s) 559, 719, 966, 1365, 1548, 2369
EcoT38I GRGCYC 2 cut(s) 357, 947
ErhI CCWWGG 6 cut(s) 559, 719, 966, 1365, 1548, 2369
FaeI CATG 7 cut(s) 379, 517, 1107, 1235, 1359, 1369, 1552
FalI AAGNNNNNCTT 2 cut(s) 1040, 1072
FaqI GGGAC 2 cut(s) 64, 1396
FatI CATG 7 cut(s) 375, 513, 1103, 1231, 1355, 1365, 1548
FauNDI CATATG 1 cut(s) 2062
FbaI TGATCA 3 cut(s) 3, 586, 789
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 8 cut(s) 705, 708, 731, 880, 890, 1017, 1734, 2058
FokI GGATG 3 cut(s) 949, 1531, 2116
FriOI GRGCYC 2 cut(s) 357, 947
Fsp4HI GCNGC 8 cut(s) 705, 708, 731, 880, 890, 1017, 1734, 2058
FspBI CTAG 6 cut(s) 281, 395, 756, 1644, 1701, 2486
FspI TGCGCA 1 cut(s) 2398
GlaI GCGC 4 cut(s) 393, 711, 1080, 2398
GluI GCNGC 8 cut(s) 705, 708, 731, 880, 890, 1017, 1734, 2058
GsaI CCCAGC 3 cut(s) 98, 774, 2114
HaeII RGCGCY 1 cut(s) 395
HgaI GACGC 4 cut(s) 61, 834, 1045, 1551
HhaI GCGC 4 cut(s) 394, 712, 1081, 2399
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 7 cut(s) 379, 517, 1107, 1235, 1359, 1369, 1552
Hin6I GCGC 4 cut(s) 392, 710, 1079, 2397
HinP1I GCGC 4 cut(s) 392, 710, 1079, 2397
HincII GTYRAC 2 cut(s) 1503, 2345
HindII GTYRAC 2 cut(s) 1503, 2345
HindIII AAGCTT 2 cut(s) 990, 1244
HinfI GANTC 7 cut(s) 243, 649, 1010, 1409, 1756, 1773, 1952
HphI GGTGA 6 cut(s) 73, 149, 412, 784, 1315, 2435
Hpy166II GTNNAC 7 cut(s) 247, 385, 1503, 1589, 1788, 1980, 2345
Hpy188I TCNGA 8 cut(s) 90, 334, 586, 602, 819, 899, 1752, 2169
Hpy8I GTNNAC 7 cut(s) 247, 385, 1503, 1589, 1788, 1980, 2345
Hpy99I CGWCG 4 cut(s) 130, 168, 425, 2330
HpyCH4III ACNGT 6 cut(s) 678, 767, 1678, 1795, 1925, 2285
HpyCH4IV ACGT 5 cut(s) 159, 221, 387, 2325, 2516
HpyF10VI GCNNNNNNNGC 7 cut(s) 160, 343, 352, 1228, 2066, 2075, 2120
HpyF3I CTNAG 3 cut(s) 645, 946, 1902
HpySE526I ACGT 5 cut(s) 159, 221, 387, 2325, 2516
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 7 cut(s) 379, 517, 1107, 1235, 1359, 1369, 1552
HspAI GCGC 4 cut(s) 392, 710, 1079, 2397
KflI GGGWCCC 1 cut(s) 2509
Kpn2I TCCGGA 1 cut(s) 224
Ksp22I TGATCA 3 cut(s) 3, 586, 789
LguI GCTCTTC 1 cut(s) 899
LmnI GCTCC 6 cut(s) 641, 955, 1086, 2149, 2242, 2272
Lsp1109I GCAGC 4 cut(s) 876, 1003, 1745, 2069
LweI GCATC 2 cut(s) 1296, 1810
MaeI CTAG 6 cut(s) 281, 395, 756, 1644, 1701, 2486
MaeII ACGT 5 cut(s) 159, 221, 387, 2325, 2516
MaeIII GTNAC 7 cut(s) 79, 304, 416, 808, 846, 961, 1999
MflI RGATCY 5 cut(s) 256, 436, 528, 1369, 1945
MhlI GDGCHC 5 cut(s) 339, 357, 947, 1990, 2277
MlsI TGGCCA 2 cut(s) 1270, 2301
MluCI AATT 9 cut(s) 310, 1162, 1377, 1484, 1746, 1831, 2026, 2313, 2400
MluNI TGGCCA 2 cut(s) 1270, 2301
MlyI GAGTC 6 cut(s) 252, 1019, 1418, 1750, 1782, 1961
MmeI TCCRAC 1 cut(s) 1051
Mox20I TGGCCA 2 cut(s) 1270, 2301
MroI TCCGGA 1 cut(s) 224
MscI TGGCCA 2 cut(s) 1270, 2301
MseI TTAA 1 cut(s) 1574
MslI CAYNNNNRTG 2 cut(s) 28, 1317
Msp20I TGGCCA 2 cut(s) 1270, 2301
MspR9I CCNGG 8 cut(s) 77, 186, 239, 254, 2087, 2154, 2421, 2506
Mva1269I GAATGC 1 cut(s) 1540
MvaI CCWGG 4 cut(s) 2087, 2154, 2421, 2506
MwoI GCNNNNNNNGC 7 cut(s) 160, 343, 352, 1228, 2066, 2075, 2120
NciI CCSGG 4 cut(s) 77, 186, 239, 254
NcoI CCATGG 2 cut(s) 1365, 1548
NdeI CATATG 1 cut(s) 2062
NheI GCTAGC 1 cut(s) 1643
NlaIII CATG 7 cut(s) 379, 517, 1107, 1235, 1359, 1369, 1552
NlaIV GGNNCC 7 cut(s) 1259, 1324, 1371, 2084, 2151, 2510, 2511
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 3 cut(s) 79, 304, 846
NsbI TGCGCA 1 cut(s) 2398
NspI RCATGY 2 cut(s) 379, 1235
NspV TTCGAA 1 cut(s) 683
PaeI GCATGC 2 cut(s) 379, 1235
PaqCI CACCTGC 1 cut(s) 2043
PasI CCCWGGG 1 cut(s) 2505
PciSI GCTCTTC 1 cut(s) 899
PctI GAATGC 1 cut(s) 1540
PfeI GAWTC 1 cut(s) 649
PflFI GACNNNGTC 1 cut(s) 662
PflMI CCANNNNNTGG 3 cut(s) 982, 994, 1586
PkrI GCNGC 8 cut(s) 706, 709, 732, 881, 891, 1018, 1735, 2059
Ple19I CGATCG 1 cut(s) 88
PleI GAGTC 6 cut(s) 251, 1018, 1417, 1750, 1781, 1960
PpsI GAGTC 6 cut(s) 251, 1018, 1417, 1750, 1781, 1960
Ppu21I YACGTR 3 cut(s) 160, 388, 2517
PpuMI RGGWCCY 1 cut(s) 2509
PshAI GACNNNNGTC 1 cut(s) 1793
Psp5II RGGWCCY 1 cut(s) 2509
Psp6I CCWGG 4 cut(s) 2085, 2152, 2419, 2504
PspEI GGTNACC 2 cut(s) 79, 961
PspFI CCCAGC 3 cut(s) 94, 770, 2110
PspGI CCWGG 4 cut(s) 2085, 2152, 2419, 2504
PspN4I GGNNCC 7 cut(s) 1259, 1324, 1371, 2084, 2151, 2510, 2511
PspPI GGNCC 4 cut(s) 985, 1466, 1788, 2509
PspPPI RGGWCCY 1 cut(s) 2509
PstI CTGCAG 1 cut(s) 2125
PsuI RGATCY 5 cut(s) 256, 436, 528, 1369, 1945
PsyI GACNNNGTC 1 cut(s) 662
PvuI CGATCG 1 cut(s) 88
RsaI GTAC 3 cut(s) 121, 1927, 2337
RsaNI GTAC 3 cut(s) 120, 1926, 2336
RseI CAYNNNNRTG 2 cut(s) 28, 1317
SapI GCTCTTC 1 cut(s) 899
SaqAI TTAA 1 cut(s) 1574
SatI GCNGC 8 cut(s) 705, 708, 731, 880, 890, 1017, 1734, 2058
Sau96I GGNCC 4 cut(s) 985, 1466, 1788, 2509
SchI GAGTC 6 cut(s) 252, 1019, 1418, 1750, 1782, 1961
ScrFI CCNGG 8 cut(s) 77, 186, 239, 254, 2087, 2154, 2421, 2506
SduI GDGCHC 5 cut(s) 339, 357, 947, 1990, 2277
SfaNI GCATC 2 cut(s) 1296, 1810
SfcI CTRYAG 3 cut(s) 532, 909, 2121
SfuI TTCGAA 1 cut(s) 683
SinI GGWCC 3 cut(s) 1466, 1788, 2509
SmiMI CAYNNNNRTG 2 cut(s) 28, 1317
SmlI CTYRAG 1 cut(s) 1046
SmoI CTYRAG 1 cut(s) 1046
SnaBI TACGTA 1 cut(s) 2517
SpeI ACTAGT 1 cut(s) 755
SphI GCATGC 2 cut(s) 379, 1235
Sse9I AATT 9 cut(s) 310, 1162, 1377, 1484, 1746, 1831, 2026, 2313, 2400
SsiI CCGC 7 cut(s) 704, 707, 730, 780, 879, 1402, 1760
SspMI CTAG 6 cut(s) 281, 395, 756, 1644, 1701, 2486
StyD4I CCNGG 8 cut(s) 75, 184, 237, 252, 2085, 2152, 2419, 2504
StyI CCWWGG 6 cut(s) 559, 719, 966, 1365, 1548, 2369
TaaI ACNGT 6 cut(s) 678, 767, 1678, 1795, 1925, 2285
TaiI ACGT 5 cut(s) 162, 224, 390, 2328, 2519
TasI AATT 9 cut(s) 310, 1162, 1377, 1484, 1746, 1831, 2026, 2313, 2400
TauI GCSGC 4 cut(s) 707, 710, 733, 882
TfiI GAWTC 1 cut(s) 649
Tru1I TTAA 1 cut(s) 1574
Tru9I TTAA 1 cut(s) 1574
TscAI CASTG 5 cut(s) 328, 1681, 1881, 2076, 2179
TseFI GTSAC 3 cut(s) 79, 304, 846
TseI GCWGC 4 cut(s) 889, 1016, 1733, 2057
Tsp45I GTSAC 3 cut(s) 79, 304, 846
TspDTI ATGAA 8 cut(s) 300, 734, 1256, 1533, 1572, 1698, 1724, 1728
TspGWI ACGGA 3 cut(s) 827, 942, 2466
TspRI CASTG 5 cut(s) 328, 1681, 1881, 2076, 2179
Tth111I GACNNNGTC 1 cut(s) 662
Van91I CCANNNNNTGG 3 cut(s) 982, 994, 1586
VpaK11BI GGWCC 3 cut(s) 1466, 1788, 2509
XapI RAATTY 6 cut(s) 1162, 1484, 1746, 1831, 2026, 2313
XceI RCATGY 2 cut(s) 379, 1235
XcmI CCANNNNNNNNNTGG 1 cut(s) 757
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 6 cut(s) 281, 395, 756, 1644, 1701, 2486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.