Rroxscaffold_5G00354200
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000440
Physical Location & Seq
Reverse (-)
32620511 .. 32622411
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354200.1

Sequence Viewer

Length: 249 bp
ATGATCTACTTGCGCAAAGAAAGGTTTCCCGTTGGCACTTATAACAAGCTTCAACCCCGCAAGTATGGTCCACACAAAGTGCTACAAAAGATCAATGATAATGCCTATGTCATTGACATGCCCGAATCCATGGGAATTTTAAAGACTTTCAATGCGAGTGATATCTATGAGTTTCGGGCAGATGCCCACGCTTCTTTTCCTGATGTAAACTCGAGGACGAGTTCTTTTCAAGTGGGGAGACTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

82

Amino Acids

9.51

Weight (kDa)

9.57

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 2 - 58 2.9e-15 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
Acc16I TGCGCA 1 cut(s) 14
AciI CCGC 1 cut(s) 58
AcsI RAATTY 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 79
AgsI TTSAA 3 cut(s) 53, 151, 230
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 232
Ama87I CYCGRG 1 cut(s) 211
ApoI RAATTY 1 cut(s) 135
Asp700I GAANNNNTTC 1 cut(s) 24
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 211
AvaII GGWCC 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 232
Bme18I GGWCC 1 cut(s) 68
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 68
BmsI GCATC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 232
BsoBI CYCGRG 1 cut(s) 211
Bsp143I GATC 2 cut(s) 3, 90
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 2 cut(s) 3, 90
BssT1I CCWWGG 1 cut(s) 129
BstDSI CCRYGG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 2 cut(s) 6, 93
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 3, 90
BstNSI RCATGY 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 129
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 68
CviAII CATG 2 cut(s) 118, 130
CviJI RGCY 1 cut(s) 49
CviKI_1 RGCY 1 cut(s) 49
DpnI GATC 2 cut(s) 5, 92
DpnII GATC 2 cut(s) 3, 90
DraI TTTAAA 1 cut(s) 141
DraIII CACNNNGTG 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 129
Eco32I GATATC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 211
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 2 cut(s) 121, 133
FaiI YATR 6 cut(s) 42, 66, 108, 119, 131, 168
FatI CATG 2 cut(s) 117, 129
FauI CCCGC 1 cut(s) 65
FspI TGCGCA 1 cut(s) 14
GlaI GCGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 15
Hin1II CATG 2 cut(s) 121, 133
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 1 cut(s) 125
Hpy166II GTNNAC 2 cut(s) 71, 208
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 2 cut(s) 71, 208
Hsp92II CATG 2 cut(s) 121, 133
HspAI GCGC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 3, 90
LpnPI CCDG 1 cut(s) 213
LweI GCATC 1 cut(s) 172
MalI GATC 2 cut(s) 5, 92
MboI GATC 2 cut(s) 3, 90
MluCI AATT 1 cut(s) 135
MnlI CCTC 1 cut(s) 207
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 129
NdeII GATC 2 cut(s) 3, 90
NlaIII CATG 2 cut(s) 121, 133
NsbI TGCGCA 1 cut(s) 14
NspI RCATGY 1 cut(s) 121
PaeR7I CTCGAG 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 125
PsiI TTATAA 1 cut(s) 42
PspPI GGNCC 1 cut(s) 68
PspXI VCTCGAGB 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 1 cut(s) 140
Sau3AI GATC 2 cut(s) 3, 90
Sau96I GGNCC 1 cut(s) 68
SetI ASST 2 cut(s) 26, 51
SfaNI GCATC 1 cut(s) 172
Sfr274I CTCGAG 1 cut(s) 211
SinI GGWCC 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 1 cut(s) 135
SsiI CCGC 1 cut(s) 58
StyI CCWWGG 1 cut(s) 129
TaqI TCGA 1 cut(s) 212
TasI AATT 1 cut(s) 135
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 1 cut(s) 135
XceI RCATGY 1 cut(s) 121
XhoI CTCGAG 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.