Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000440

Physical Location & Seq

Genomic Coordinates Reverse (-)

27963315 .. 27964504

Gene Structure 1190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24236

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAAGCTCCTTGAATGGTTCCTGCTCTGGCCATACATTAGGCTACTGATTGTCTTCTTTTTGGTGATGCCACATTTTGATGGTGCCTTATGTGTCTATAAACACCTTATCTGTCCATGCCTCTCCATGGATCCCCAAATTGTTATCAACTTGTTCAACAAGCAGAAGGAGTCCCTTGTGAGAGATAACTTTCTCTCTGAGGTTGAGAGATATGTCAAGGAGAATGGACCTGAAGGTTTGGAAAAATTTATTGCTTGCAAGGTAAGCAAATCTTGTTACTTGTATCATTGTAATTATTCATTGTGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0042538 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22 zf-met

Protein Analysis

103

Amino Acids

12.2

Weight (kDa)

7.56

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	3 - 40	1e-05	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica	Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis	pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis	RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata	RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora	Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa	Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha	Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana	Rw6G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AclWI	GGATC	2 cut(s)	125, 138
AcoI	YGGCCR	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	14, 157
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
AlwI	GGATC	2 cut(s)	125, 138
AoxI	GGCC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	46
BccI	CCATC	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	3 cut(s)	20, 85, 132
BmsI	GCATC	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	31
BshNI	GGYRCC	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	31
Bsp1407I	TGTACA	1 cut(s)	305
Bsp143I	GATC	1 cut(s)	130
Bsp19I	CCATGG	1 cut(s)	126
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	3 cut(s)	20, 85, 132
BspPI	GGATC	2 cut(s)	125, 138
BspT107I	GGYRCC	1 cut(s)	83
BsrGI	TGTACA	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	3 cut(s)	117, 127, 309
CviJI	RGCY	3 cut(s)	7, 31, 43
CviKI_1	RGCY	3 cut(s)	7, 31, 43
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	3 cut(s)	120, 130, 312
FaiI	YATR	7 cut(s)	34, 91, 99, 118, 128, 213, 310
FalI	AAGNNNNNCTT	2 cut(s)	256, 288
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	3 cut(s)	116, 126, 308
HaeIII	GGCC	1 cut(s)	31
Hin1II	CATG	3 cut(s)	120, 130, 312
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	1 cut(s)	199
Hpy8I	GTNNAC	1 cut(s)	306
HpyAV	CCTTC	2 cut(s)	160, 227
HpyCH4V	TGCA	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	120, 130, 312
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	12
LpnPI	CCDG	3 cut(s)	13, 35, 243
LweI	GCATC	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	1 cut(s)	46
MflI	RGATCY	1 cut(s)	130
MlsI	TGGCCA	1 cut(s)	31
MluCI	AATT	3 cut(s)	138, 245, 292
MluNI	TGGCCA	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	2 cut(s)	131, 193
Mox20I	TGGCCA	1 cut(s)	31
MscI	TGGCCA	1 cut(s)	31
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	3 cut(s)	120, 130, 312
NlaIV	GGNNCC	3 cut(s)	20, 85, 132
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PspN4I	GGNNCC	3 cut(s)	20, 85, 132
PspPI	GGNCC	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
RseI	CAYNNNNRTG	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	179
SetI	ASST	6 cut(s)	9, 108, 204, 232, 238, 264
SfaNI	GCATC	1 cut(s)	57
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	3 cut(s)	138, 245, 292
StyI	CCWWGG	1 cut(s)	126
TasI	AATT	3 cut(s)	138, 245, 292
TatI	WGTACW	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	17, 288
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.