Rh6CG171400

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000440
Physical Location & Seq
Reverse (-)
23734865 .. 23748367
13503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG171400.1

Sequence Viewer

Length: 2241 bp
ATGAATGTCCAGAAGGAGTGGACCACAGTCAATCCGGTGCAAACTCAAACTGATGCAACTTTGAATTCCCCTCTCGGTGATACTAAACACAAAGCTACATACGAGGCACTGAACATAAAGAATGAGGCAGAGCCTAAGCTCACTTGCCCTGAAAACCGTACTGTCGCAGGTATAGAAGATCCAGAGTCTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAGGTAACTACTTCAAGTGAAAGCATTTTGAATTCCCACCTGCAAGGGAGAAAACACAAGGCAGCATATGAGGCACTGAAAGCAAGGAACCAGGCATTTGTGTCCAAGATTGCCCCAGCTTCAACTGCAGAAACATCCAATCAACCGAATATGGAGCCTGGAAAGAGTATTCCGAGCAGTGGATCAAAACAAAAAGTTACCGTAAGTGAAAATGTGCAAGGCCAGAAAAATAGTAGTCCAGCTCCAATCACAAAGAAGCACCACAAACTGAAAGAGGAGAGTGCAGACGGTGTATCCAGCAATGGCCAGAAAGGGAAAATTCCTATACGCATCGAGAAGGTACAAAGTCAACAACCGAAGCCAAATAATAAAGCTCCAAGGGTGAAGAGTTCTCCTTTGTGGTGCACAATTTGTAGCATACACTGTCCTGAGACTGCCATGCTGTCTCATCTCAACGGACAAATACACAAAAAAAAAGCCCGTAGCCATACGAAGACGCTGAAGCTCAAGATGGGCTTACTGGGTCTTGTTGGATTTGCGCTCCAATGCTTTGGTGTTCTTGCATGGCCTCTCTTTGCTCTGGTCTATCCTCTGTATTCTTCCATTAGAGCAATCGAGACAAATTCCATTACAGATACTCACAAGATAAATACGTATTGGGTTGTCTTCTCATTGATCTTGCTATTTGAGCATGCTTTTATGAAGCTTCTTGAATGGTTCCTGCTCTGGCCATACATTAGGCTACTGATTGTCTTCTTTTTGGTGATGCCACATTTTGATGGTGCCTTATATGTCTATAAACACCTTATCTGTCCATGCCTCTCCATGGATCCCCAAATTGTTATCAACTCGTTCAAGAAGCGGAAGGAGTCCCTTGTGAGAGATAACTTTCTCTATGAGGTGGAGAGATATGTAAAGGAGAATGGACCTGAAAGTTTGGAAAAATTTATTCCTTGCAAGTCAACAAGGGCAAATCTCGATGTAAAAGTGTTCAATGCAGTTTCATCCATGGACAATGAAGCGTCAAAATCCTTAAAGCCAAATGGTGGACAGAATGATATCAAAGCTGTGCAGGTAACGGCAAAAAAGAAGGAAACAACTGCTAGCCAAGTTAGTCAGGCAGAGCCTAATCTCACTGTGAATGAAGATGGATTTTCTTCTAGGAAGATGAATGAAAAAGTCATCGAAGTTGCAGCCGACAGAGAAATTCTGAAGACTCCACCTCCAAAGAAAGTCCAGGAGTGGACCACAGTCAATCCGCTGCAAACTCAAACTGATGCAACTTTGAATTCCCTTCTCGGTGATAATAAACACGAGGCTACATACGAGGCACTGAAGATAAAGAATGAGGCAGAGCCTAAGCTCACTTTCCCTGAAAACCGTACTGTTGCTGCCATGGAAATAAATGAAAAGCCGGTTGAGGTTGGAACAGGTATAGAAGATCCAGAGTCTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAGGTAACTACTTCAAGTGAAAGCATTTTGAATTCCCACCTGCAAGGGAGAAAACACAAGGCAGCATATGAGGCACTGAAAGCAAGGAACCAGGCATTTGTGTCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACCGAATAAGGAGCCAGGAAACAGTATTCCGAGCAGTGGATCAAAACAAAAAGTTACTGTAAGTGAAAATGTGCAAGGCCAGAAAAATAGTAGTCCAGCTCCAATCACAAAGAAGCACCACAAACTGAAAGAGGAGAGCGCAGACGGTGTATCCAGCAATGGCCAGAAGGGGAAAATTCCTATACAAGTCGAGAAGGTACAAAGTCAACAACCAAAGCCAAATAAAGCTCCAAGGGTGAAGAGTTCTCCTTTGTGGTGCGCAATTTGTAGCATGCACTGTCCTGAGAAATCCATGCCGTCTCATCTCAACGGAAAAAAACACAAGAAAAAGGCGCAAGAACTACTAGAGAACCTAATCAAGCCCAGGGGCCCTTTGTAA

Protein Analysis

746

Amino Acids

82.77

Weight (kDa)

9.37

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 71 - 95 5e-09 Zinc-finger of C2H2 type
TB2_DP1_HVA22 PF03134 273 - 349 1.7e-18 TB2/DP1, HVA22 family
zf-met PF12874 568 - 592 5e-09 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 276, 1767
Acc16I TGCGCA 1 cut(s) 2122
Acc36I ACCTGC 4 cut(s) 158, 276, 1291, 1767
AccB1I GGYRCC 1 cut(s) 1010
AccB7I CCANNNNNTGG 1 cut(s) 1274
AciI CCGC 2 cut(s) 1090, 1487
AclWI GGATC 6 cut(s) 173, 418, 1052, 1065, 1664, 1909
AcoI YGGCCR 3 cut(s) 532, 956, 2023
AcsI RAATTY 9 cut(s) 64, 259, 546, 850, 1172, 1434, 1516, 1750, 2037
AcuI CTGAAG 3 cut(s) 749, 1460, 1583
AfaI GTAC 4 cut(s) 160, 570, 1612, 2061
AfiI CCNNNNNNNGG 4 cut(s) 407, 1054, 1274, 1898
AjnI CCWGG 6 cut(s) 318, 385, 1464, 1809, 1876, 2225
Alw21I GWGCWC 3 cut(s) 223, 635, 1714
Alw26I GTCTC 6 cut(s) 192, 653, 678, 839, 1683, 2166
Alw44I GTGCAC 1 cut(s) 631
AlwI GGATC 6 cut(s) 173, 418, 1052, 1065, 1664, 1909
AoxI GGCC 7 cut(s) 448, 532, 794, 956, 1939, 2023, 2230
ApaI GGGCCC 1 cut(s) 2234
ApaLI GTGCAC 1 cut(s) 631
ApeKI GCWGC 5 cut(s) 290, 1421, 1489, 1619, 1781
ApoI RAATTY 9 cut(s) 64, 259, 546, 850, 1172, 1434, 1516, 1750, 2037
AspLEI GCGC 4 cut(s) 769, 2003, 2123, 2197
AspS9I GGNCC 5 cut(s) 21, 1154, 1473, 2230, 2231
AsuHPI GGTGA 5 cut(s) 89, 622, 1003, 1541, 2110
AsuNHI GCTAGC 1 cut(s) 1331
AvaII GGWCC 3 cut(s) 21, 1154, 1473
BaeGI GKGCMC 2 cut(s) 635, 2234
BalI TGGCCA 3 cut(s) 534, 958, 2025
BamHI GGATCC 1 cut(s) 1057
BanI GGYRCC 1 cut(s) 1010
BanII GRGCYC 1 cut(s) 2234
BauI CACGAG 1 cut(s) 1541
BbsI GAAGAC 4 cut(s) 728, 886, 973, 1448
Bbv12I GWGCWC 3 cut(s) 223, 635, 1714
BbvI GCAGC 5 cut(s) 302, 1433, 1476, 1606, 1793
BccI CCATC 3 cut(s) 733, 1001, 1370
BceAI ACGGC 2 cut(s) 1323, 2143
BciT130I CCWGG 6 cut(s) 320, 387, 1466, 1811, 1878, 2227
BciVI GTATCC 2 cut(s) 532, 2023
BcoDI GTCTC 6 cut(s) 192, 653, 678, 839, 1683, 2166
BfaI CTAG 3 cut(s) 1332, 1389, 2207
BfmI CTRYAG 1 cut(s) 354
BfuAI ACCTGC 4 cut(s) 158, 276, 1291, 1767
BfuI GTATCC 2 cut(s) 532, 2023
BisI GCNGC 5 cut(s) 291, 1422, 1490, 1620, 1782
BlsI GCNGC 5 cut(s) 292, 1423, 1491, 1621, 1783
Bme1390I CCNGG 6 cut(s) 320, 387, 1466, 1811, 1878, 2227
Bme18I GGWCC 3 cut(s) 21, 1154, 1473
BmgT120I GGNCC 5 cut(s) 21, 1154, 1473, 2230, 2231
BmiI GGNNCC 9 cut(s) 317, 384, 947, 1012, 1059, 1808, 1875, 2231, 2232
BmrFI CCNGG 6 cut(s) 320, 387, 1466, 1811, 1878, 2227
BmrI ACTGGG 1 cut(s) 758
BmsI GCATC 4 cut(s) 43, 567, 984, 1495
BmtI GCTAGC 1 cut(s) 1335
BmuI ACTGGG 1 cut(s) 758
BoxI GACNNNNGTC 2 cut(s) 26, 1478
BpiI GAAGAC 4 cut(s) 728, 886, 973, 1448
Bpu10I CCTNAGC 2 cut(s) 135, 1587
BpuEI CTTGAG 1 cut(s) 719
BsaAI YACGTR 1 cut(s) 882
BsaJI CCNNGG 7 cut(s) 605, 1053, 1236, 1623, 2093, 2225, 2226
BsaWI WCCGGW 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 1435, 1465
Bsc4I CCNNNNNNNGG 4 cut(s) 407, 1054, 1274, 1898
Bse118I RCCGGY 1 cut(s) 1642
Bse1I ACTGG 1 cut(s) 753
Bse3DI GCAATG 2 cut(s) 535, 2026
BseBI CCWGG 6 cut(s) 320, 387, 1466, 1811, 1878, 2227
BseDI CCNNGG 7 cut(s) 605, 1053, 1236, 1623, 2093, 2225, 2226
BseGI GGATG 3 cut(s) 362, 1232, 1853
BseLI CCNNNNNNNGG 4 cut(s) 407, 1054, 1274, 1898
BseMI GCAATG 2 cut(s) 535, 2026
BseMII CTCAG 2 cut(s) 648, 2136
BseNI ACTGG 1 cut(s) 753
BseRI GAGGAG 2 cut(s) 518, 2009
BseSI GKGCMC 2 cut(s) 635, 2234
BseXI GCAGC 5 cut(s) 302, 1433, 1476, 1606, 1793
BseYI CCCAGC 2 cut(s) 343, 1834
BsgI GTGCAG 2 cut(s) 531, 1319
BshFI GGCC 7 cut(s) 450, 534, 796, 958, 1941, 2025, 2232
BshNI GGYRCC 1 cut(s) 1010
BsiHKAI GWGCWC 3 cut(s) 223, 635, 1714
BsiSI CCGG 2 cut(s) 35, 1643
BslFI GGGAC 1 cut(s) 1084
BslI CCNNNNNNNGG 4 cut(s) 407, 1054, 1274, 1898
BsmAI GTCTC 6 cut(s) 192, 653, 678, 839, 1683, 2166
BsmBI CGTCTC 1 cut(s) 2166
BsmFI GGGAC 1 cut(s) 1084
BsnI GGCC 7 cut(s) 450, 534, 796, 958, 1941, 2025, 2232
Bsp120I GGGCCC 1 cut(s) 2230
Bsp1286I GDGCHC 4 cut(s) 223, 635, 1714, 2234
Bsp143I GATC 6 cut(s) 178, 410, 903, 1057, 1669, 1901
Bsp19I CCATGG 3 cut(s) 1053, 1236, 1623
BspACI CCGC 2 cut(s) 1090, 1487
BspANI GGCC 7 cut(s) 450, 534, 796, 958, 1941, 2025, 2232
BspCNI CTCAG 2 cut(s) 649, 2137
BspLI GGNNCC 9 cut(s) 317, 384, 947, 1012, 1059, 1808, 1875, 2231, 2232
BspMAI CTGCAG 1 cut(s) 358
BspMI ACCTGC 4 cut(s) 158, 276, 1291, 1767
BspOI GCTAGC 1 cut(s) 1335
BspPI GGATC 6 cut(s) 173, 418, 1052, 1065, 1664, 1909
BspT107I GGYRCC 1 cut(s) 1010
BsrDI GCAATG 2 cut(s) 535, 2026
BsrFI RCCGGY 1 cut(s) 1642
BsrI ACTGG 1 cut(s) 753
BssAI RCCGGY 1 cut(s) 1642
BssECI CCNNGG 7 cut(s) 605, 1053, 1236, 1623, 2093, 2225, 2226
BssMI GATC 6 cut(s) 178, 410, 903, 1057, 1669, 1901
BssSI CACGAG 1 cut(s) 1541
BssT1I CCWWGG 5 cut(s) 605, 1053, 1236, 1623, 2093
Bst2BI CACGAG 1 cut(s) 1541
Bst2UI CCWGG 6 cut(s) 320, 387, 1466, 1811, 1878, 2227
Bst6I CTCTTC 2 cut(s) 608, 2096
BstBAI YACGTR 1 cut(s) 882
BstC8I GCNNGC 3 cut(s) 921, 1333, 2135
BstDEI CTNAG 4 cut(s) 135, 657, 1587, 2145
BstDSI CCRYGG 3 cut(s) 1053, 1236, 1623
BstF5I GGATG 3 cut(s) 362, 1232, 1853
BstHHI GCGC 4 cut(s) 769, 2003, 2123, 2197
BstKTI GATC 6 cut(s) 181, 413, 906, 1060, 1672, 1904
BstMAI GTCTC 6 cut(s) 192, 653, 678, 839, 1683, 2166
BstMBI GATC 6 cut(s) 178, 410, 903, 1057, 1669, 1901
BstMWI GCNNNNNNNGC 7 cut(s) 299, 308, 353, 916, 1790, 1799, 1844
BstNI CCWGG 6 cut(s) 320, 387, 1466, 1811, 1878, 2227
BstNSI RCATGY 2 cut(s) 923, 2137
BstPAI GACNNNNGTC 2 cut(s) 26, 1478
BstSCI CCNGG 6 cut(s) 318, 385, 1464, 1809, 1876, 2225
BstSFI CTRYAG 1 cut(s) 354
BstSLI GKGCMC 2 cut(s) 635, 2234
BstSNI TACGTA 1 cut(s) 882
BstV1I GCAGC 5 cut(s) 302, 1433, 1476, 1606, 1793
BstV2I GAAGAC 4 cut(s) 728, 886, 973, 1448
BstX2I RGATCY 3 cut(s) 178, 1057, 1669
BstXI CCANNNNNNTGG 1 cut(s) 779
BstYI RGATCY 3 cut(s) 178, 1057, 1669
BsuI GTATCC 2 cut(s) 532, 2023
BsuRI GGCC 7 cut(s) 450, 534, 796, 958, 1941, 2025, 2232
BtgI CCRYGG 3 cut(s) 1053, 1236, 1623
BtsCI GGATG 3 cut(s) 362, 1232, 1853
BtsI GCAGTG 2 cut(s) 412, 1903
BtsIMutI CAGTG 9 cut(s) 107, 302, 412, 649, 1362, 1559, 1793, 1903, 2137
BveI ACCTGC 4 cut(s) 158, 276, 1291, 1767
Cac8I GCNNGC 3 cut(s) 921, 1333, 2135
CfoI GCGC 4 cut(s) 769, 2003, 2123, 2197
Cfr10I RCCGGY 1 cut(s) 1642
Cfr13I GGNCC 5 cut(s) 21, 1154, 1473, 2230, 2231
CseI GACGC 2 cut(s) 733, 1239
Csp6I GTAC 4 cut(s) 159, 569, 1611, 2060
CviAII CATG 9 cut(s) 667, 792, 920, 1044, 1054, 1237, 1624, 2134, 2155
CviQI GTAC 4 cut(s) 159, 569, 1611, 2060
DdeI CTNAG 4 cut(s) 135, 657, 1587, 2145
DpnI GATC 6 cut(s) 180, 412, 905, 1059, 1671, 1903
DpnII GATC 6 cut(s) 178, 410, 903, 1057, 1669, 1901
EaeI YGGCCR 3 cut(s) 532, 956, 2023
Eam1104I CTCTTC 2 cut(s) 608, 2096
EarI CTCTTC 2 cut(s) 608, 2096
Eco105I TACGTA 1 cut(s) 882
Eco130I CCWWGG 5 cut(s) 605, 1053, 1236, 1623, 2093
Eco24I GRGCYC 1 cut(s) 2234
Eco32I GATATC 1 cut(s) 1288
Eco47I GGWCC 3 cut(s) 21, 1154, 1473
Eco57I CTGAAG 3 cut(s) 749, 1460, 1583
EcoO109I RGGNCCY 2 cut(s) 2230, 2231
EcoRI GAATTC 4 cut(s) 64, 259, 1516, 1750
EcoRII CCWGG 6 cut(s) 318, 385, 1464, 1809, 1876, 2225
EcoRV GATATC 1 cut(s) 1288
EcoT14I CCWWGG 5 cut(s) 605, 1053, 1236, 1623, 2093
EcoT38I GRGCYC 1 cut(s) 2234
ErhI CCWWGG 5 cut(s) 605, 1053, 1236, 1623, 2093
Esp3I CGTCTC 1 cut(s) 2166
FaeI CATG 9 cut(s) 670, 795, 923, 1047, 1057, 1240, 1627, 2137, 2158
FalI AAGNNNNNCTT 2 cut(s) 728, 760
FaqI GGGAC 1 cut(s) 1084
FatI CATG 9 cut(s) 666, 791, 919, 1043, 1053, 1236, 1623, 2133, 2154
FauNDI CATATG 2 cut(s) 295, 1786
Fnu4HI GCNGC 5 cut(s) 291, 1422, 1490, 1620, 1782
FokI GGATG 3 cut(s) 349, 1219, 1840
FriOI GRGCYC 1 cut(s) 2234
Fsp4HI GCNGC 5 cut(s) 291, 1422, 1490, 1620, 1782
FspBI CTAG 3 cut(s) 1332, 1389, 2207
FspI TGCGCA 1 cut(s) 2122
GlaI GCGC 4 cut(s) 768, 2002, 2122, 2196
GluI GCNGC 5 cut(s) 291, 1422, 1490, 1620, 1782
GsaI CCCAGC 2 cut(s) 347, 1838
HaeIII GGCC 7 cut(s) 450, 534, 796, 958, 1941, 2025, 2232
HapII CCGG 2 cut(s) 35, 1643
HgaI GACGC 2 cut(s) 733, 1239
HhaI GCGC 4 cut(s) 769, 2003, 2123, 2197
Hin1II CATG 9 cut(s) 670, 795, 923, 1047, 1057, 1240, 1627, 2137, 2158
Hin6I GCGC 4 cut(s) 767, 2001, 2121, 2195
HinP1I GCGC 4 cut(s) 767, 2001, 2121, 2195
HincII GTYRAC 3 cut(s) 578, 1191, 2069
HindII GTYRAC 3 cut(s) 578, 1191, 2069
HindIII AAGCTT 1 cut(s) 932
HinfI GANTC 4 cut(s) 185, 1097, 1444, 1676
HpaII CCGG 2 cut(s) 35, 1643
HphI GGTGA 5 cut(s) 89, 622, 1003, 1541, 2110
Hpy166II GTNNAC 9 cut(s) 21, 213, 578, 633, 1191, 1277, 1473, 1704, 2069
Hpy188I TCNGA 3 cut(s) 402, 1440, 1893
Hpy8I GTNNAC 9 cut(s) 21, 213, 578, 633, 1191, 1277, 1473, 1704, 2069
HpyAV CCTTC 7 cut(s) 7, 559, 1087, 1312, 1532, 2023, 2050
HpyCH4IV ACGT 1 cut(s) 881
HpyF10VI GCNNNNNNNGC 7 cut(s) 299, 308, 353, 916, 1790, 1799, 1844
HpyF3I CTNAG 4 cut(s) 135, 657, 1587, 2145
HpySE526I ACGT 1 cut(s) 881
Hsp92II CATG 9 cut(s) 670, 795, 923, 1047, 1057, 1240, 1627, 2137, 2158
HspAI GCGC 4 cut(s) 767, 2001, 2121, 2195
Kzo9I GATC 6 cut(s) 178, 410, 903, 1057, 1669, 1901
LmnI GCTCC 7 cut(s) 382, 475, 607, 774, 1873, 1966, 2095
Lsp1109I GCAGC 5 cut(s) 302, 1433, 1476, 1606, 1793
LweI GCATC 4 cut(s) 43, 567, 984, 1495
MaeI CTAG 3 cut(s) 1332, 1389, 2207
MaeII ACGT 1 cut(s) 881
MaeIII GTNAC 5 cut(s) 232, 424, 1303, 1723, 1915
MalI GATC 6 cut(s) 180, 412, 905, 1059, 1671, 1903
MboI GATC 6 cut(s) 178, 410, 903, 1057, 1669, 1901
MflI RGATCY 3 cut(s) 178, 1057, 1669
MhlI GDGCHC 4 cut(s) 223, 635, 1714, 2234
MlsI TGGCCA 3 cut(s) 534, 958, 2025
MluNI TGGCCA 3 cut(s) 534, 958, 2025
MlyI GAGTC 4 cut(s) 194, 1106, 1438, 1685
MmeI TCCRAC 2 cut(s) 739, 1633
Mox20I TGGCCA 3 cut(s) 534, 958, 2025
MscI TGGCCA 3 cut(s) 534, 958, 2025
MseI TTAA 1 cut(s) 1262
MslI CAYNNNNRTG 1 cut(s) 1005
Msp20I TGGCCA 3 cut(s) 534, 958, 2025
MspA1I CMGCKG 1 cut(s) 1489
MspI CCGG 2 cut(s) 35, 1643
MspR9I CCNGG 6 cut(s) 320, 387, 1466, 1811, 1878, 2227
MvaI CCWGG 6 cut(s) 320, 387, 1466, 1811, 1878, 2227
MwoI GCNNNNNNNGC 7 cut(s) 299, 308, 353, 916, 1790, 1799, 1844
NcoI CCATGG 3 cut(s) 1053, 1236, 1623
NdeI CATATG 2 cut(s) 295, 1786
NdeII GATC 6 cut(s) 178, 410, 903, 1057, 1669, 1901
NheI GCTAGC 1 cut(s) 1331
NlaIII CATG 9 cut(s) 670, 795, 923, 1047, 1057, 1240, 1627, 2137, 2158
NlaIV GGNNCC 9 cut(s) 317, 384, 947, 1012, 1059, 1808, 1875, 2231, 2232
NsbI TGCGCA 1 cut(s) 2122
NspI RCATGY 2 cut(s) 923, 2137
PaeI GCATGC 2 cut(s) 923, 2137
PaqCI CACCTGC 2 cut(s) 276, 1767
PasI CCCWGGG 1 cut(s) 2226
PflMI CCANNNNNTGG 1 cut(s) 1274
PfoI TCCNGGA 1 cut(s) 1464
PkrI GCNGC 5 cut(s) 292, 1423, 1491, 1621, 1783
PleI GAGTC 4 cut(s) 193, 1105, 1438, 1684
PpsI GAGTC 4 cut(s) 193, 1105, 1438, 1684
Ppu21I YACGTR 1 cut(s) 882
PshAI GACNNNNGTC 2 cut(s) 26, 1478
Psp6I CCWGG 6 cut(s) 318, 385, 1464, 1809, 1876, 2225
PspFI CCCAGC 2 cut(s) 343, 1834
PspGI CCWGG 6 cut(s) 318, 385, 1464, 1809, 1876, 2225
PspN4I GGNNCC 9 cut(s) 317, 384, 947, 1012, 1059, 1808, 1875, 2231, 2232
PspOMI GGGCCC 1 cut(s) 2230
PspPI GGNCC 5 cut(s) 21, 1154, 1473, 2230, 2231
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 3 cut(s) 178, 1057, 1669
RsaI GTAC 4 cut(s) 160, 570, 1612, 2061
RsaNI GTAC 4 cut(s) 159, 569, 1611, 2060
RseI CAYNNNNRTG 1 cut(s) 1005
SaqAI TTAA 1 cut(s) 1262
SatI GCNGC 5 cut(s) 291, 1422, 1490, 1620, 1782
Sau3AI GATC 6 cut(s) 178, 410, 903, 1057, 1669, 1901
Sau96I GGNCC 5 cut(s) 21, 1154, 1473, 2230, 2231
SchI GAGTC 4 cut(s) 194, 1106, 1438, 1685
ScrFI CCNGG 6 cut(s) 320, 387, 1466, 1811, 1878, 2227
SduI GDGCHC 4 cut(s) 223, 635, 1714, 2234
SfaNI GCATC 4 cut(s) 43, 567, 984, 1495
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 3 cut(s) 21, 1154, 1473
SmiMI CAYNNNNRTG 1 cut(s) 1005
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
SnaBI TACGTA 1 cut(s) 882
SphI GCATGC 2 cut(s) 923, 2137
SsiI CCGC 2 cut(s) 1090, 1487
SspMI CTAG 3 cut(s) 1332, 1389, 2207
StyD4I CCNGG 6 cut(s) 318, 385, 1464, 1809, 1876, 2225
StyI CCWWGG 5 cut(s) 605, 1053, 1236, 1623, 2093
TaiI ACGT 1 cut(s) 884
TaqI TCGA 5 cut(s) 561, 843, 1206, 1413, 2052
Tru1I TTAA 1 cut(s) 1262
Tru9I TTAA 1 cut(s) 1262
TscAI CASTG 9 cut(s) 114, 309, 412, 656, 1369, 1566, 1800, 1903, 2144
TseI GCWGC 5 cut(s) 290, 1421, 1489, 1619, 1781
TspDTI ATGAA 8 cut(s) 17, 944, 1221, 1260, 1386, 1412, 1416, 1650
TspGWI ACGGA 2 cut(s) 699, 2187
TspRI CASTG 9 cut(s) 114, 309, 412, 656, 1369, 1566, 1800, 1903, 2144
Van91I CCANNNNNTGG 1 cut(s) 1274
VneI GTGCAC 1 cut(s) 631
VpaK11BI GGWCC 3 cut(s) 21, 1154, 1473
XapI RAATTY 9 cut(s) 64, 259, 546, 850, 1172, 1434, 1516, 1750, 2037
XceI RCATGY 2 cut(s) 923, 2137
XspI CTAG 3 cut(s) 1332, 1389, 2207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.