RchiOBHm_Chr6g0270191

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000440
Physical Location & Seq
Reverse (-)
27983846 .. 27993950
10105 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24239

Sequence Viewer

Length: 4260 bp
ATGGGCTTACTGGGTCTCGTTGGATTTGCGCTCCAGTGCTTTGATGTTGTTGCATGGTACGCTTTCTCTACGAAGATGAACACCTTGGTCAAGCCTCTCTTTGCTCTGGTCTATCCTCTCTATTCTTCCATTAGAGCAATCGAGACAAATTCCATTACAGATACTCACAAGATAAATACGTATTGGGTCGTCTTCTCATTGATCTTGCTATTTGAACATGCTTTTATGAAGCTCCTTGAATGGTTCCTGCTCTGGCCATACATTAGGCTACTGATTGTCTTCTTTTTGGTGATGCCACATTTTGATGGTGCCTTATATGTCTATAAACACCTTATCTGTCCATGCCTCTCCATGGATCCCCAAATTGTTATCAACTTGTTCAACAAGCGGAAGGAGTCCTTTGTGAGAGATAACTTTCTCTCTGAGGTGGAGAGATATGTAAAGGAGAATGGACCTGAAGGTTTGGAAAGATTTATTGCTTGCAAGTCAACGAGGACAAATCTCGATGTAAAAGAGTTCAATGCCGTTTCATCCATGGATACTGAAGCGTCAAAATCCATAAAGCCAAATGGTGGACAGAATGATATCAAAGCTGTGCAGGTAATGGCAAAAAAGAAGCGAACAACTGCTAGTCAAGTTAGTCAGGCAAAGCCTAATCTCACTGTGAATGAAGATAAATTTTCTTCTACGAAGATGAATGAAAAAGCCATAGAGGGTGCAGCTGATGGAGAAATTCTGAAGACACCACCTCCAAAGAAATTCCAGAAGGAGTGGACGACCACTCAAACTGATGCAACTTTGAGTTCCCCTCTTGGTGATAATAAAGACAAGGCTACATACGAGGCACTGAAGATAAAGAATGAGGCAGATCCTAAGCTCACTTGGCCTGGAAACCGTGCAGCTATGGAAATATATGAAAAGCCAGTTGAGGTTGGAACAGGTATAGAAGATCCAGTGACTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAAGTAACCACTACATGTGAAAGCAATTTGAATTCCCACCTGCAAGGGCGAAAACACAAGGCAGCATATGAGGCTGTGAAAGCAAGGAACCAGGAATTTTTGCCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACCGAATGAGGTGCCAGGAAAGAGTTCCCCGAGCAGTGGATCAAAACAAAAGGTTACTATCAATGAAAATTCGAAATCCATAGAGGCAAATGGTGGACAGAATGATATCAAAGCTATGCAGGTAACGGCAAAAAAGAAGGAAACAACTTCTAGCCAAGTTTGTCAGGCCGAGCCTAATCTCACTGTGAATGAAGATAAATTTTCTTCTATGAAGATGAATGAAAAAGCCATTTTGGGTGCAGCACTTAGAGATATTCTGAAGACACCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCACCACTCAAACTGATGCAACTTTGAGTTCCCCTCTCGGTGATAATAAAGGCAAGGCTACATATGAGGCACTGAAGATAAAGAATGAGGCAGATCCTAAGCTCACTTGGCCTGAAAACCGTGCTGCTGCAGCTATGGAAATATATGAAAAGCCAGTTGAGGATGGAACAGGTATAGAAGATCCAGAGACTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAAGTAACCACTACATGTGAAAGCAATTTGAATTACCACCTGCAAGGGCGAAAACATAAGGCAGCATATGAGGCTTTGAAAGTAAGGAACCAGGAATTTTTGCCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACCGAATGAGGTGCCAGGAAAGAGTTCCCTGAGCTGTGGATCAAAACAAAAGGTTACTATCAATGAAAATTCAACGAGGATAAATCTGAATGTACAAGAGTTAAATGCAGTTTCATTCGTGGATAATGAAGCGTTGAAATCCATTGAGGCAAATGGTGGACAGAATGATATCAAAGCTGTGCAGATAACGGCAAAAAAGAAGGAAACAACTTCTAGCCAAGTTTGTCAGGCCGAGCCTAATCTCACTTTGAATGAAGATAAATTTTATTCTACCAAGATGAATGAAAAAGCCATAGAGGGTGCAGCCGATAGAGAAATTCTGAAGACATCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCACCACTCAAACTGATGCAACTTTGATTCCCCCTCTCGGTGATAATAAAGACAAGGCTACATACGAGGCACAGAAGATAAAGAATGAGGCAGATCCTAAGCTCAGTTGGCCTGAAAACCGTGCTGCTGCAGCTATGGAAATATATGAAAAGCCAGTTGAGGTTGGAACAGGTATAGAAGATTCAGAGACTCTTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAAGTAACCACTACGTGTGAAAGCAATTTGAATTCCCACCTGCAAGGGCGAAAACACAAGGCAGCATATGAGGCAGTGAAAGCAAGCAACCAGGAATTTTTGCCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACCAAATGAGGTGCCAGGAAAGAGTTCCCCGAGCAGTGGATCAAAACAAAAGGTTACTATCAATGAAAATTCGAAATCCATAGAGGCAAATGGTGGACAGAATGATATCAAAGCTGTGCAGGTAACGGCAAAAAAGAAGGAAACAACTTCTAGCCAGGTTTGTCAGGTCGAGCCTAATCTCACTGTGAATGAAGATAAATTTTCTTCTATGAAGATGAATGAAAAAGCCATAGAGGGTGCAGCTGATGGAGAAATTCTGAAGACACCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCACAGTCAGTCCGCTACAAACTCAAACTGATGCAACTTTGAGTTCCCCTCCTGGTGATAATAAAGACAAGGCTACATACGAGGCGCTGAAGATAAAGAATGAGGCAGGGGCTAAGCTCACTTGGACTGAAAACCGTGCTGTTGTAGCCATGGAAATATATGAAAAGCCGGTTGAGGTTGGAACAGGTATAGAAGATCGAAAGACTCCTGAAGAAGTCCAGAAAGAGTGGACTTGTACTCTGTGTCAAGTAACCACTACATGTGAAAACAATTTGAATTCCCACCTGCAAGGGCAAAAACATAAGGCAGCATATGAGGCAGTGAAAGCAAGGAACCAGGAATTTTTGCCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACCGAATGCGGTGCCAGGAAAGAGTTCCCCGAGCAGTGGATCAGAACAAAAGGTTACTATCATTGAAAATTCGAAATCCATTGAGGCAAATGGTGGACAGAATGATATCAAAGCTATGCAGGTAACGGCAAAAAAGAAGGAAGCAATTTCTAGCCAGGTTTGTCAGGCCGAGCCTAATCTCGCTGTGAACGAAGATAAATTTTCTTCTACGAAGATGAATGAAAAAGCCATTGGGGGTGCAGCCTATAGAGAAATTCTGAAGACACCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCACAGTCAGTCCGCTACAAACTCAAATTGATGCAACTTTGAGTTCCCCTCCTGGTGATAATAAAGACAAGGCTACATACAAGGCACTGAAGATAAAGAATGAGGCAGAGGCTAAGCTCACTTGGACTGAAAACCGTGCTGTTGCAGCCATGGAAATATATGAAAAGCCAGTTGAGGTTGGAACAGGTATCGAACATCCAAAGACTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTACTCTCTGTCAAGTAACCACTACATGTGAAAACAATTTGAAGTCCCACCTGCAAGGGCGAAAACACAAGGCAGCATATGAGGCAGTGAAAGCAAGCAACCAGGAATTTTTGCCCAAAATTGCCCCAGCTTCAACTGCAAAAACATCCAATCCACCAAATCAGGTGCCAGGAAAGAGTTCCCCGAGCAGTGGATCAAAACAAAAGGTTACTATAAATGAAAATTCGAAATCCATAGAGGCAAATGGTGGACGGAATGATATCAAAGCTGTGCAGGTCAGTCGGGCAGAGCCTAATCTCACTGTGAATGAAGATAAATTTTCTTCTACAAAGATGAATGAAAAAGCCATTGAGGGTGCAGCTGATAGAGAAATTCTGAAGACACCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCACAGTCAGTCCGCTACAAACTCCAACTGATGCAACTTTGAGTTCCCCTCTTGGTGATAATAAAGACAAGGTACATACGAGGCACTGA

Protein Analysis

1419

Amino Acids

156.11

Weight (kDa)

8.73

Isoelectric Point (pI)

32.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 39 - 115 3.8e-18 TB2/DP1, HVA22 family
zf-met PF12874 328 - 352 5.4e-09 Zinc-finger of C2H2 type
zf-met PF12874 551 - 575 9e-08 Zinc-finger of C2H2 type
zf-met PF12874 795 - 819 5.4e-09 Zinc-finger of C2H2 type
zf-met PF12874 1023 - 1047 1.1e-07 Zinc-finger of C2H2 type
zf-met PF12874 1251 - 1275 9.6e-09 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 5 cut(s) 1047, 1716, 2448, 3132, 3816
AccB1I GGYRCC 6 cut(s) 308, 1153, 1822, 2554, 3238, 3922
AccB7I CCANNNNNTGG 1 cut(s) 572
AciI CCGC 5 cut(s) 388, 2852, 3236, 3536, 4184
AcoI YGGCCR 1 cut(s) 254
AdeI CACNNNGTG 1 cut(s) 2415
AfaI GTAC 5 cut(s) 59, 1905, 3076, 3760, 4245
AfiI CCNNNNNNNGG 7 cut(s) 352, 572, 1178, 2207, 2579, 3263, 3947
AflIII ACRYGT 5 cut(s) 1013, 1682, 2414, 3098, 3782
AjuI GAANNNNNNNTTGG 2 cut(s) 3441, 3473
Alw21I GWGCWC 3 cut(s) 994, 1663, 2395
Alw26I GTCTC 4 cut(s) 20, 137, 1619, 2351
Ama87I CYCGRG 4 cut(s) 1171, 2572, 3256, 3940
AoxI GGCC 7 cut(s) 254, 884, 1308, 1547, 2040, 2279, 3393
Asp700I GAANNNNTTC 5 cut(s) 1165, 1834, 2566, 3250, 3934
AspLEI GCGC 2 cut(s) 31, 2926
AspS9I GGNCC 6 cut(s) 452, 1437, 2169, 2838, 3522, 4170
AsuHPI GGTGA 8 cut(s) 301, 827, 1490, 2133, 2222, 2906, 3590, 4238
AsuII TTCGAA 4 cut(s) 1214, 2615, 3299, 3983
AvaI CYCGRG 4 cut(s) 1171, 2572, 3256, 3940
AvaII GGWCC 6 cut(s) 452, 1437, 2169, 2838, 3522, 4170
BalI TGGCCA 1 cut(s) 256
BamHI GGATCC 1 cut(s) 355
BanI GGYRCC 6 cut(s) 308, 1153, 1822, 2554, 3238, 3922
BbsI GAAGAC 8 cut(s) 184, 271, 746, 1409, 2141, 2810, 3494, 4142
Bbv12I GWGCWC 3 cut(s) 994, 1663, 2395
BccI CCATC 4 cut(s) 299, 719, 1595, 2783
BceAI ACGGC 5 cut(s) 509, 1284, 2016, 2685, 3369
BcgI CGANNNNNNTGC 8 cut(s) 1135, 1169, 1804, 1838, 3220, 3254, 4019, 4053
BciVI GTATCC 1 cut(s) 532
BcoDI GTCTC 4 cut(s) 20, 137, 1619, 2351
BfaI CTAG 5 cut(s) 630, 1293, 2025, 2694, 3378
BfmI CTRYAG 3 cut(s) 1566, 2298, 3472
BfoI RGCGCY 1 cut(s) 2927
BfuI GTATCC 1 cut(s) 532
BlpI GCTNAGC 2 cut(s) 2952, 3636
Bme18I GGWCC 6 cut(s) 452, 1437, 2169, 2838, 3522, 4170
BmeT110I CYCGRG 4 cut(s) 1171, 2572, 3256, 3940
BmgT120I GGNCC 6 cut(s) 452, 1437, 2169, 2838, 3522, 4170
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 7 cut(s) 282, 781, 1444, 2176, 2860, 3544, 4192
BmuI ACTGGG 1 cut(s) 20
BoxI GACNNNNGTC 3 cut(s) 2843, 3527, 4175
BpiI GAAGAC 8 cut(s) 184, 271, 746, 1409, 2141, 2810, 3494, 4142
BpmI CTGGAG 1 cut(s) 17
Bpu10I CCTNAGC 4 cut(s) 873, 1536, 1841, 2268
Bpu1102I GCTNAGC 2 cut(s) 2952, 3636
Bpu14I TTCGAA 4 cut(s) 1214, 2615, 3299, 3983
BsaAI YACGTR 2 cut(s) 180, 2415
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 5 cut(s) 84, 351, 534, 2988, 3672
Bsc4I CCNNNNNNNGG 7 cut(s) 352, 572, 1178, 2207, 2579, 3263, 3947
Bse118I RCCGGY 1 cut(s) 3007
Bse1I ACTGG 7 cut(s) 15, 34, 923, 953, 1592, 2324, 3692
BseDI CCNNGG 5 cut(s) 84, 351, 534, 2988, 3672
BseGI GGATG 8 cut(s) 530, 1133, 1606, 1802, 2534, 3218, 3718, 3902
BseLI CCNNNNNNNGG 7 cut(s) 352, 572, 1178, 2207, 2579, 3263, 3947
BseMII CTCAG 3 cut(s) 414, 1832, 2287
BseNI ACTGG 7 cut(s) 15, 34, 923, 953, 1592, 2324, 3692
BseYI CCCAGC 5 cut(s) 1114, 1783, 2515, 3199, 3883
BshFI GGCC 7 cut(s) 256, 886, 1310, 1549, 2042, 2281, 3395
BshNI GGYRCC 6 cut(s) 308, 1153, 1822, 2554, 3238, 3922
BsiHKAI GWGCWC 3 cut(s) 994, 1663, 2395
BsiHKCI CYCGRG 4 cut(s) 1171, 2572, 3256, 3940
BsiSI CCGG 1 cut(s) 3008
BslFI GGGAC 1 cut(s) 3787
BslI CCNNNNNNNGG 7 cut(s) 352, 572, 1178, 2207, 2579, 3263, 3947
BsmAI GTCTC 4 cut(s) 20, 137, 1619, 2351
BsmFI GGGAC 1 cut(s) 3787
BsmI GAATGC 1 cut(s) 3238
BsnI GGCC 7 cut(s) 256, 886, 1310, 1549, 2042, 2281, 3395
Bso31I GGTCTC 1 cut(s) 20
BsoBI CYCGRG 4 cut(s) 1171, 2572, 3256, 3940
Bsp119I TTCGAA 4 cut(s) 1214, 2615, 3299, 3983
Bsp1286I GDGCHC 3 cut(s) 994, 1663, 2395
Bsp1407I TGTACA 1 cut(s) 1903
Bsp1720I GCTNAGC 2 cut(s) 2952, 3636
Bsp19I CCATGG 4 cut(s) 351, 534, 2988, 3672
BspACI CCGC 5 cut(s) 388, 2852, 3236, 3536, 4184
BspANI GGCC 7 cut(s) 256, 886, 1310, 1549, 2042, 2281, 3395
BspCNI CTCAG 3 cut(s) 415, 1833, 2286
BspMAI CTGCAG 2 cut(s) 1570, 2302
BspT104I TTCGAA 4 cut(s) 1214, 2615, 3299, 3983
BspT107I GGYRCC 6 cut(s) 308, 1153, 1822, 2554, 3238, 3922
BspTNI GGTCTC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 3007
BsrGI TGTACA 1 cut(s) 1903
BsrI ACTGG 7 cut(s) 15, 34, 923, 953, 1592, 2324, 3692
BssAI RCCGGY 1 cut(s) 3007
BssECI CCNNGG 5 cut(s) 84, 351, 534, 2988, 3672
BssT1I CCWWGG 5 cut(s) 84, 351, 534, 2988, 3672
BstAUI TGTACA 1 cut(s) 1903
BstBAI YACGTR 2 cut(s) 180, 2415
BstBI TTCGAA 4 cut(s) 1214, 2615, 3299, 3983
BstC8I GCNNGC 3 cut(s) 481, 2485, 3853
BstDEI CTNAG 9 cut(s) 423, 873, 1388, 1536, 1841, 2268, 2273, 2952, 3636
BstDSI CCRYGG 4 cut(s) 351, 534, 2988, 3672
BstF5I GGATG 8 cut(s) 530, 1133, 1606, 1802, 2534, 3218, 3718, 3902
BstH2I RGCGCY 1 cut(s) 2927
BstHHI GCGC 2 cut(s) 31, 2926
BstMAI GTCTC 4 cut(s) 20, 137, 1619, 2351
BstNSI RCATGY 5 cut(s) 221, 1017, 1686, 3102, 3786
BstPAI GACNNNNGTC 3 cut(s) 2843, 3527, 4175
BstSFI CTRYAG 3 cut(s) 1566, 2298, 3472
BstSNI TACGTA 1 cut(s) 180
BstV2I GAAGAC 8 cut(s) 184, 271, 746, 1409, 2141, 2810, 3494, 4142
BstX2I RGATCY 6 cut(s) 355, 868, 949, 1531, 1618, 2263
BstYI RGATCY 6 cut(s) 355, 868, 949, 1531, 1618, 2263
BsuI GTATCC 1 cut(s) 532
BsuRI GGCC 7 cut(s) 256, 886, 1310, 1549, 2042, 2281, 3395
BtgI CCRYGG 4 cut(s) 351, 534, 2988, 3672
BtsCI GGATG 8 cut(s) 530, 1133, 1606, 1802, 2534, 3218, 3718, 3902
BtsI GCAGTG 7 cut(s) 1183, 2481, 2584, 3165, 3268, 3849, 3952
Cac8I GCNNGC 3 cut(s) 481, 2485, 3853
CfoI GCGC 2 cut(s) 31, 2926
Cfr10I RCCGGY 1 cut(s) 3007
Cfr13I GGNCC 6 cut(s) 452, 1437, 2169, 2838, 3522, 4170
CseI GACGC 1 cut(s) 537
Csp6I GTAC 5 cut(s) 58, 1904, 3075, 3759, 4244
CviQI GTAC 5 cut(s) 58, 1904, 3075, 3759, 4244
DdeI CTNAG 9 cut(s) 423, 873, 1388, 1536, 1841, 2268, 2273, 2952, 3636
DraIII CACNNNGTG 1 cut(s) 2415
EaeI YGGCCR 1 cut(s) 254
Eco105I TACGTA 1 cut(s) 180
Eco130I CCWWGG 5 cut(s) 84, 351, 534, 2988, 3672
Eco31I GGTCTC 1 cut(s) 20
Eco32I GATATC 6 cut(s) 586, 1249, 1981, 2650, 3334, 4018
Eco47I GGWCC 6 cut(s) 452, 1437, 2169, 2838, 3522, 4170
Eco88I CYCGRG 4 cut(s) 1171, 2572, 3256, 3940
EcoRI GAATTC 3 cut(s) 1030, 2431, 3115
EcoRV GATATC 6 cut(s) 586, 1249, 1981, 2650, 3334, 4018
EcoT14I CCWWGG 5 cut(s) 84, 351, 534, 2988, 3672
ErhI CCWWGG 5 cut(s) 84, 351, 534, 2988, 3672
FalI AAGNNNNNCTT 4 cut(s) 83, 115, 383, 415
FaqI GGGAC 1 cut(s) 3787
FauNDI CATATG 6 cut(s) 1066, 1501, 1735, 2467, 3151, 3835
FokI GGATG 8 cut(s) 517, 1120, 1613, 1789, 2521, 3205, 3705, 3889
FspBI CTAG 5 cut(s) 630, 1293, 2025, 2694, 3378
GlaI GCGC 2 cut(s) 30, 2925
GsaI CCCAGC 5 cut(s) 1118, 1787, 2519, 3203, 3887
GsuI CTGGAG 1 cut(s) 17
HaeII RGCGCY 1 cut(s) 2927
HaeIII GGCC 7 cut(s) 256, 886, 1310, 1549, 2042, 2281, 3395
HapII CCGG 1 cut(s) 3008
HgaI GACGC 1 cut(s) 537
HhaI GCGC 2 cut(s) 31, 2926
Hin6I GCGC 2 cut(s) 29, 2924
HinP1I GCGC 2 cut(s) 29, 2924
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HinfI GANTC 8 cut(s) 395, 958, 1627, 2197, 2351, 2359, 3043, 3727
HpaII CCGG 1 cut(s) 3008
HphI GGTGA 8 cut(s) 301, 827, 1490, 2133, 2222, 2906, 3590, 4238
HpyCH4IV ACGT 2 cut(s) 179, 2414
HpyF3I CTNAG 9 cut(s) 423, 873, 1388, 1536, 1841, 2268, 2273, 2952, 3636
HpySE526I ACGT 2 cut(s) 179, 2414
HspAI GCGC 2 cut(s) 29, 2924
LmnI GCTCC 2 cut(s) 36, 237
LweI GCATC 7 cut(s) 282, 781, 1444, 2176, 2860, 3544, 4192
MaeI CTAG 5 cut(s) 630, 1293, 2025, 2694, 3378
MaeII ACGT 2 cut(s) 179, 2414
MflI RGATCY 6 cut(s) 355, 868, 949, 1531, 1618, 2263
MhlI GDGCHC 3 cut(s) 994, 1663, 2395
MlsI TGGCCA 1 cut(s) 256
MluNI TGGCCA 1 cut(s) 256
MlyI GAGTC 6 cut(s) 404, 952, 1621, 2353, 3037, 3721
MmeI TCCRAC 5 cut(s) 913, 2314, 2998, 3682, 4220
Mox20I TGGCCA 1 cut(s) 256
MroXI GAANNNNTTC 5 cut(s) 1165, 1834, 2566, 3250, 3934
MscI TGGCCA 1 cut(s) 256
MseI TTAA 2 cut(s) 1913, 2364
MslI CAYNNNNRTG 1 cut(s) 303
Msp20I TGGCCA 1 cut(s) 256
MspA1I CMGCKG 3 cut(s) 722, 2786, 4118
MspI CCGG 1 cut(s) 3008
Mva1269I GAATGC 1 cut(s) 3238
NcoI CCATGG 4 cut(s) 351, 534, 2988, 3672
NdeI CATATG 6 cut(s) 1066, 1501, 1735, 2467, 3151, 3835
NmeAIII GCCGAG 3 cut(s) 1336, 2068, 3421
NmuCI GTSAC 1 cut(s) 955
NspI RCATGY 5 cut(s) 221, 1017, 1686, 3102, 3786
NspV TTCGAA 4 cut(s) 1214, 2615, 3299, 3983
PaqCI CACCTGC 5 cut(s) 1047, 1716, 2448, 3132, 3816
PciI ACATGT 4 cut(s) 1013, 1682, 3098, 3782
PcsI WCGNNNNNNNCGW 1 cut(s) 3414
PctI GAATGC 1 cut(s) 3238
PdmI GAANNNNTTC 5 cut(s) 1165, 1834, 2566, 3250, 3934
PfeI GAWTC 2 cut(s) 2197, 2351
PflMI CCANNNNNTGG 1 cut(s) 572
PleI GAGTC 6 cut(s) 403, 952, 1621, 2353, 3037, 3721
PpsI GAGTC 6 cut(s) 403, 952, 1621, 2353, 3037, 3721
Ppu21I YACGTR 2 cut(s) 180, 2415
PscI ACATGT 4 cut(s) 1013, 1682, 3098, 3782
PshAI GACNNNNGTC 3 cut(s) 2843, 3527, 4175
PspFI CCCAGC 5 cut(s) 1114, 1783, 2515, 3199, 3883
PspPI GGNCC 6 cut(s) 452, 1437, 2169, 2838, 3522, 4170
PstI CTGCAG 2 cut(s) 1570, 2302
PsuI RGATCY 6 cut(s) 355, 868, 949, 1531, 1618, 2263
PvuII CAGCTG 3 cut(s) 722, 2786, 4118
RsaI GTAC 5 cut(s) 59, 1905, 3076, 3760, 4245
RsaNI GTAC 5 cut(s) 58, 1904, 3075, 3759, 4244
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 2 cut(s) 1913, 2364
Sau96I GGNCC 6 cut(s) 452, 1437, 2169, 2838, 3522, 4170
SchI GAGTC 6 cut(s) 404, 952, 1621, 2353, 3037, 3721
SduI GDGCHC 3 cut(s) 994, 1663, 2395
SfaNI GCATC 7 cut(s) 282, 781, 1444, 2176, 2860, 3544, 4192
SfcI CTRYAG 3 cut(s) 1566, 2298, 3472
SfuI TTCGAA 4 cut(s) 1214, 2615, 3299, 3983
SinI GGWCC 6 cut(s) 452, 1437, 2169, 2838, 3522, 4170
SmiMI CAYNNNNRTG 1 cut(s) 303
SnaBI TACGTA 1 cut(s) 180
SsiI CCGC 5 cut(s) 388, 2852, 3236, 3536, 4184
SspMI CTAG 5 cut(s) 630, 1293, 2025, 2694, 3378
StyI CCWWGG 5 cut(s) 84, 351, 534, 2988, 3672
TaiI ACGT 2 cut(s) 182, 2417
TaqI TCGA 9 cut(s) 141, 504, 1214, 2615, 2712, 3037, 3299, 3714, 3983
TatI WGTACW 3 cut(s) 1903, 3074, 3758
TfiI GAWTC 2 cut(s) 2197, 2351
Tru1I TTAA 2 cut(s) 1913, 2364
Tru9I TTAA 2 cut(s) 1913, 2364
TseFI GTSAC 1 cut(s) 955
Tsp45I GTSAC 1 cut(s) 955
TspGWI ACGGA 1 cut(s) 4024
Van91I CCANNNNNTGG 1 cut(s) 572
VpaK11BI GGWCC 6 cut(s) 452, 1437, 2169, 2838, 3522, 4170
XceI RCATGY 5 cut(s) 221, 1017, 1686, 3102, 3786
XmnI GAANNNNTTC 5 cut(s) 1165, 1834, 2566, 3250, 3934
XspI CTAG 5 cut(s) 630, 1293, 2025, 2694, 3378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.