Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000440

Physical Location & Seq

Genomic Coordinates Reverse (-)

23775351 .. 23778227

Gene Structure 2877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG171500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGTTTACTGGGTCTTATTGGATTTGCGCTCCAATGCTTTGATGTTCTTGCATGGCCTCTCTTTGCTCTGGTCTATCCTCTGTATTCTTCCATTAGAGCAATGGAGACAAATTCCATTACAGATACTCAGAAGATAAATACGTATTGGGTCGTCTTCTCATTGATCTTGCTATTTGAACATGCTTTTATGAAGCTCCTTGAATGGTTCCTGCTCTGGCCATACATTAGGCTACTGATTGTCTTCTTTTTGGTGATGCCACATTTTGATAGTGCCTTATATGTCTATAAACACCTTATCTGTCCATGCCTCTCCATGGATCCCCAAATTGTTATCAACTTGTTCAACAAGCAGAAGGAGTCCCTTGTGAGAGATAACTTTCTCTCTGAGGTTGAGAGATTTGTCAAGGAGAATGGACCTGAAGGTTTGGAAAAATTTATTGCTAGCAAGCCAAATGGTGGACAGAATGATATCAAAGCTGTGCAGGTTATGGTGAAAAAGAAGGAAACAACTGGTAGCCATGTTAGTCCGGCAGAGCTTAACCTCACTGTGAATGAAGATAAATTTTCTTCTGGGAAGATGAATGTAAAAGCCATTGAGGTTGCAGCTGACGGAGAAATGCTAAATACTCCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCACAGTCAGTCCGCTACTAACTCAAACTGATGCAACTTTTAGTTCCCCTCTCGGTGATAATAAACACAAGGCTACATACGAGGGGCTGAAGATAAAGAATGAGGGAAAGCTGAAGCTCACTGGGCCTGAAAACCGTACTGTTGCAGACATGGAAATAGGCCTGGCAATAGTGCGGTCACGGGCGGGTTACGGGCGGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0042538 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22 zf-met

Protein Analysis

287

Amino Acids

32.35

Weight (kDa)

8.28

Isoelectric Point (pI)

24.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	27 - 103	8.8e-18	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica	Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis	pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis	RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata	RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora	Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa	Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha	Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana	Rw6G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
AccB7I	CCANNNNNTGG	1 cut(s)	458
AciI	CCGC	4 cut(s)	674, 835, 845, 856
AclWI	GGATC	2 cut(s)	314, 327
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	3 cut(s)	112, 434, 563
AcuI	CTGAAG	3 cut(s)	441, 770, 794
AfaI	GTAC	1 cut(s)	799
AfiI	CCNNNNNNNGG	2 cut(s)	316, 458
AgsI	TTSAA	3 cut(s)	179, 203, 346
AjnI	CCWGG	1 cut(s)	822
AluBI	AGCT	6 cut(s)	196, 479, 538, 608, 772, 778
AluI	AGCT	6 cut(s)	196, 479, 538, 608, 772, 778
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	314, 327
AoxI	GGCC	4 cut(s)	56, 218, 785, 820
ApeKI	GCWGC	1 cut(s)	605
ApoI	RAATTY	3 cut(s)	112, 434, 563
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	3 cut(s)	416, 660, 785
AsuHPI	GGTGA	3 cut(s)	265, 505, 728
AsuNHI	GCTAGC	1 cut(s)	443
AvaII	GGWCC	2 cut(s)	416, 660
BalI	TGGCCA	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	319
BbsI	GAAGAC	2 cut(s)	148, 235
BbvI	GCAGC	1 cut(s)	617
BciT130I	CCWGG	1 cut(s)	824
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	444
BfuAI	ACCTGC	1 cut(s)	475
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
Bme1390I	CCNGG	1 cut(s)	824
Bme18I	GGWCC	2 cut(s)	416, 660
BmgT120I	GGNCC	3 cut(s)	416, 660, 785
BmiI	GGNNCC	2 cut(s)	209, 321
BmrFI	CCNGG	1 cut(s)	824
BmrI	ACTGGG	2 cut(s)	20, 792
BmsI	GCATC	2 cut(s)	246, 682
BmtI	GCTAGC	1 cut(s)	447
BmuI	ACTGGG	2 cut(s)	20, 792
BoxI	GACNNNNGTC	1 cut(s)	665
BpiI	GAAGAC	2 cut(s)	148, 235
BsaAI	YACGTR	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 458
Bse1I	ACTGG	3 cut(s)	15, 517, 787
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	824
BseDI	CCNNGG	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	316, 458
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	143, 378
BseNI	ACTGG	3 cut(s)	15, 517, 787
BseXI	GCAGC	1 cut(s)	617
BsgI	GTGCAG	1 cut(s)	503
BshFI	GGCC	4 cut(s)	58, 220, 787, 822
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	2 cut(s)	316, 458
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	4 cut(s)	58, 220, 787, 822
Bsp143I	GATC	2 cut(s)	165, 319
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	4 cut(s)	674, 835, 845, 856
BspANI	GGCC	4 cut(s)	58, 220, 787, 822
BspCNI	CTCAG	2 cut(s)	142, 379
BspLI	GGNNCC	2 cut(s)	209, 321
BspMI	ACCTGC	1 cut(s)	475
BspOI	GCTAGC	1 cut(s)	447
BspPI	GGATC	2 cut(s)	314, 327
BsrDI	GCAATG	1 cut(s)	108
BsrI	ACTGG	3 cut(s)	15, 517, 787
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	165, 319
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	824
Bst4CI	ACNGT	4 cut(s)	550, 667, 797, 802
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	445, 449
BstDEI	CTNAG	2 cut(s)	129, 387
BstDSI	CCRYGG	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	168, 322
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	2 cut(s)	165, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	784
BstNI	CCWGG	1 cut(s)	824
BstNSI	RCATGY	1 cut(s)	185
BstPAI	GACNNNNGTC	1 cut(s)	665
BstSCI	CCNGG	1 cut(s)	822
BstSNI	TACGTA	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	617
BstV2I	GAAGAC	2 cut(s)	148, 235
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	4 cut(s)	58, 220, 787, 822
BtgI	CCRYGG	1 cut(s)	315
BtsIMutI	CAGTG	2 cut(s)	546, 780
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	445, 449
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	416, 660, 785
Csp6I	GTAC	1 cut(s)	798
CviAII	CATG	6 cut(s)	54, 182, 306, 316, 521, 811
CviQI	GTAC	1 cut(s)	798
DdeI	CTNAG	2 cut(s)	129, 387
DpnI	GATC	2 cut(s)	167, 321
DpnII	GATC	2 cut(s)	165, 319
EaeI	YGGCCR	1 cut(s)	218
Eco105I	TACGTA	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	822
Eco32I	GATATC	1 cut(s)	472
Eco47I	GGWCC	2 cut(s)	416, 660
Eco57I	CTGAAG	3 cut(s)	441, 770, 794
EcoRII	CCWGG	1 cut(s)	822
EcoRV	GATATC	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	6 cut(s)	57, 185, 309, 319, 524, 814
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	6 cut(s)	53, 181, 305, 315, 520, 810
FauI	CCCGC	1 cut(s)	838
Fnu4HI	GCNGC	1 cut(s)	606
Fsp4HI	GCNGC	1 cut(s)	606
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	606
HaeIII	GGCC	4 cut(s)	58, 220, 787, 822
HapII	CCGG	1 cut(s)	530
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	6 cut(s)	57, 185, 309, 319, 524, 814
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	1 cut(s)	359
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	3 cut(s)	265, 505, 728
Hpy166II	GTNNAC	3 cut(s)	8, 461, 660
Hpy188I	TCNGA	2 cut(s)	132, 388
Hpy188III	TCNNGA	1 cut(s)	649
Hpy8I	GTNNAC	3 cut(s)	8, 461, 660
HpyAV	CCTTC	4 cut(s)	349, 416, 496, 646
HpyCH4III	ACNGT	4 cut(s)	550, 667, 797, 802
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	5 cut(s)	53, 484, 605, 695, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	784
HpyF3I	CTNAG	2 cut(s)	129, 387
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	6 cut(s)	57, 185, 309, 319, 524, 814
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	165, 319
LmnI	GCTCC	2 cut(s)	36, 201
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	2 cut(s)	246, 682
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	837, 848
MalI	GATC	2 cut(s)	167, 321
MboI	GATC	2 cut(s)	165, 319
MboII	GAAGA	8 cut(s)	81, 145, 148, 235, 561, 569, 589, 763
MflI	RGATCY	1 cut(s)	319
MlsI	TGGCCA	1 cut(s)	220
MluCI	AATT	4 cut(s)	112, 327, 434, 563
MluNI	TGGCCA	1 cut(s)	220
MlyI	GAGTC	1 cut(s)	368
Mox20I	TGGCCA	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	220
MseI	TTAA	2 cut(s)	540, 862
Msp20I	TGGCCA	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	824
MvaI	CCWGG	1 cut(s)	824
MwoI	GCNNNNNNNGC	1 cut(s)	784
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	2 cut(s)	165, 319
NheI	GCTAGC	1 cut(s)	443
NlaIII	CATG	6 cut(s)	57, 185, 309, 319, 524, 814
NlaIV	GGNNCC	2 cut(s)	209, 321
NmuCI	GTSAC	1 cut(s)	837
NspI	RCATGY	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	822
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Ppu21I	YACGTR	1 cut(s)	144
PshAI	GACNNNNGTC	1 cut(s)	665
Psp6I	CCWGG	1 cut(s)	822
PspGI	CCWGG	1 cut(s)	822
PspN4I	GGNNCC	2 cut(s)	209, 321
PspPI	GGNCC	3 cut(s)	416, 660, 785
PsuI	RGATCY	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	799
RsaNI	GTAC	1 cut(s)	798
SaqAI	TTAA	2 cut(s)	540, 862
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	2 cut(s)	165, 319
Sau96I	GGNCC	3 cut(s)	416, 660, 785
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	824
SfaNI	GCATC	2 cut(s)	246, 682
SinI	GGWCC	2 cut(s)	416, 660
SnaBI	TACGTA	1 cut(s)	144
Sse9I	AATT	4 cut(s)	112, 327, 434, 563
SseBI	AGGCCT	1 cut(s)	822
SsiI	CCGC	4 cut(s)	674, 835, 845, 856
SspMI	CTAG	1 cut(s)	444
StuI	AGGCCT	1 cut(s)	822
StyD4I	CCNGG	1 cut(s)	822
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	4 cut(s)	550, 667, 797, 802
TaiI	ACGT	1 cut(s)	146
TasI	AATT	4 cut(s)	112, 327, 434, 563
Tru1I	TTAA	2 cut(s)	540, 862
Tru9I	TTAA	2 cut(s)	540, 862
TscAI	CASTG	2 cut(s)	553, 787
TseFI	GTSAC	1 cut(s)	837
TseI	GCWGC	1 cut(s)	605
Tsp45I	GTSAC	1 cut(s)	837
TspDTI	ATGAA	3 cut(s)	206, 570, 596
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	2 cut(s)	553, 787
Van91I	CCANNNNNTGG	1 cut(s)	458
VpaK11BI	GGWCC	2 cut(s)	416, 660
XapI	RAATTY	3 cut(s)	112, 434, 563
XceI	RCATGY	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.