Rh6AG369700

Adaptor-related protein complex 5, beta 1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000440
Physical Location & Seq
Reverse (-)
56765920 .. 56766183
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG369700.1

Sequence Viewer

Length: 264 bp
ATGCTCTCCGTCACCGCCATCGTCATCACAGCCGACTACATGCTCGACGGCCTGGTCGAACTGCTGCTCACGGTCGCTAACTGCCCCAACCATGGCGTCGACCGCCAGGCGCGTTTCGATTCTGAATACGACGATGCCTCTGGTGCCGTTCAGTGCTCCTCAGGTGTTGGGGAATGGCTCCGGGAAGGAGGGTTCGGGTGGGTTGAACTACAAGGAGTTGAGGAGGGCTATGTCGTTTTTGCTGGAGTGGTAATGGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.3

Weight (kDa)

4.05

Isoelectric Point (pI)

29.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 99
AccII CGCG 1 cut(s) 112
AciI CCGC 2 cut(s) 15, 103
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 206
AjnI CCWGG 2 cut(s) 51, 105
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
Alw21I GWGCWC 1 cut(s) 158
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 64
AspLEI GCGC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 160
BanI GGYRCC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 51
BccI CCATC 1 cut(s) 26
BceAI ACGGC 2 cut(s) 64, 131
BciT130I CCWGG 2 cut(s) 53, 107
BcnI CCSGG 1 cut(s) 182
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 3 cut(s) 53, 107, 182
BmiI GGNNCC 2 cut(s) 145, 179
BmrFI CCNGG 3 cut(s) 53, 107, 182
BmsI GCATC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse21I CCTNAGG 1 cut(s) 160
BseBI CCWGG 2 cut(s) 53, 107
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 2 cut(s) 148, 236
BseXI GCAGC 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 112
Bsh1285I CGRYCG 2 cut(s) 75, 103
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 143
BsiEI CGRYCG 2 cut(s) 75, 103
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 92
BsnI GGCC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 158
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 2 cut(s) 15, 103
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 173
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 145, 179
BspT107I GGYRCC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 91
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 2 cut(s) 53, 107
Bst4CI ACNGT 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 160
BstDSI CCRYGG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 112
BstMCI CGRYCG 2 cut(s) 75, 103
BstMWI GCNNNNNNNGC 2 cut(s) 102, 143
BstNI CCWGG 2 cut(s) 53, 107
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 3 cut(s) 51, 105, 180
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 51
Bsu36I CCTNAGG 1 cut(s) 160
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 158
CfoI GCGC 1 cut(s) 112
CseI GACGC 1 cut(s) 85
CviAII CATG 2 cut(s) 40, 92
CviJI RGCY 4 cut(s) 32, 51, 178, 228
CviKI_1 RGCY 4 cut(s) 32, 51, 178, 228
DdeI CTNAG 1 cut(s) 160
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 51, 105
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 2 cut(s) 43, 95
FaiI YATR 3 cut(s) 41, 93, 231
FatI CATG 2 cut(s) 39, 91
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 65
GlaI GCGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 181
HgaI GACGC 1 cut(s) 85
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 2 cut(s) 43, 95
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 1 cut(s) 119
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 3 cut(s) 50, 101, 134
HpyAV CCTTC 2 cut(s) 179, 251
HpyCH4III ACNGT 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 143
HpyF3I CTNAG 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 2 cut(s) 43, 95
HspAI GCGC 1 cut(s) 110
LmnI GCTCC 2 cut(s) 161, 183
LpnPI CCDG 8 cut(s) 38, 65, 92, 119, 126, 147, 194, 228
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 158
MnlI CCTC 5 cut(s) 148, 169, 182, 214, 217
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 3 cut(s) 53, 107, 182
MvaI CCWGG 2 cut(s) 53, 107
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 102, 143
NciI CCSGG 1 cut(s) 182
NcoI CCATGG 1 cut(s) 91
NlaIII CATG 2 cut(s) 43, 95
NlaIV GGNNCC 2 cut(s) 145, 179
NmuCI GTSAC 1 cut(s) 10
NspI RCATGY 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 180
PkrI GCNGC 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 51, 105
PspGI CCWGG 2 cut(s) 51, 105
PspN4I GGNNCC 2 cut(s) 145, 179
SalI GTCGAC 1 cut(s) 98
SatI GCNGC 1 cut(s) 65
ScrFI CCNGG 3 cut(s) 53, 107, 182
SduI GDGCHC 1 cut(s) 158
SetI ASST 1 cut(s) 166
SfaNI GCATC 1 cut(s) 124
SsiI CCGC 2 cut(s) 15, 103
StyD4I CCNGG 3 cut(s) 51, 105, 180
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 1 cut(s) 73
TaqI TCGA 4 cut(s) 45, 57, 99, 117
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 1 cut(s) 158
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 10
TspRI CASTG 1 cut(s) 158
XceI RCATGY 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.