RchiOBHm_Chr7g0229301
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000440
Physical Location & Seq
Forward (+)
52854393 .. 52855407
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20541

Sequence Viewer

Length: 477 bp
ATGGCTAAGGATGTGCAGTCTATTAGAGAAGAAGTTAAGGCCAAGTTGGAAGAAACTAATGCCAAGTATAAAGCTACAGCTAACAAGCATCGAAGAGTTAAAGTGTTCCAAGAGGGTGATGACGTGATGGTGTTTCTAAGGAAGGAGAGGTTTCCTGTTGGTGCCTATAACAAGCTGAAGCCAAGAAAATATGGACCTTTTAAGGTGCAGAAGAAGATCAACGACAATGCTTATGTTATTGCACTTCTTGATTCCATGGGCATTTCTAACACCTTTAATGTTGCTGATCTGCATGAGTTTCTTGAAGATGTTGTTCTTTACTCTGAAGAGAACTCGGGGTCGAGTTCTTCAGAGGTGGAGGAGACTGATGTAGAGCAAATGGCGATAAGGATTGAAGAACAACTCGATCGTGCAAAAGGAGGAAAACCCGGTTTGCTGCAACTTTGGCATTCGATGTCCGAATCGCGATTGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

158

Amino Acids

18.07

Weight (kDa)

6.34

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 39 - 100 2.1e-18 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AccII CGCG 1 cut(s) 466
AcuI CTGAAG 3 cut(s) 197, 333, 345
AgsI TTSAA 2 cut(s) 305, 395
AjiI CACGTC 1 cut(s) 124
AluBI AGCT 3 cut(s) 74, 80, 175
AluI AGCT 3 cut(s) 74, 80, 175
Alw26I GTCTC 1 cut(s) 356
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 436
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 334
AvaII GGWCC 1 cut(s) 194
BanI GGYRCC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 423
BccI CCATC 1 cut(s) 121
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 356
BfmI CTRYAG 2 cut(s) 75, 473
BisI GCNGC 1 cut(s) 437
BlsI GCNGC 1 cut(s) 438
Bme1390I CCNGG 1 cut(s) 429
Bme18I GGWCC 1 cut(s) 194
BmeT110I CYCGRG 1 cut(s) 334
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 97
Bpu10I CCTNAGC 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 16
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 423
BsgI GTGCAG 2 cut(s) 35, 227
Bsh1236I CGCG 1 cut(s) 466
Bsh1285I CGRYCG 1 cut(s) 409
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 161
BsiEI CGRYCG 1 cut(s) 409
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 1 cut(s) 429
BsmAI GTCTC 1 cut(s) 356
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 334
Bsp143I GATC 3 cut(s) 216, 286, 406
Bsp19I CCATGG 1 cut(s) 255
Bsp68I TCGCGA 1 cut(s) 466
BspANI GGCC 1 cut(s) 41
BspFNI CGCG 1 cut(s) 466
BspLI GGNNCC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 3 cut(s) 216, 286, 406
BssT1I CCWWGG 1 cut(s) 255
Bst6I CTCTTC 2 cut(s) 88, 321
BstDEI CTNAG 2 cut(s) 6, 137
BstDSI CCRYGG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 16
BstFNI CGCG 1 cut(s) 466
BstKTI GATC 3 cut(s) 219, 289, 409
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 3 cut(s) 216, 286, 406
BstMCI CGRYCG 1 cut(s) 409
BstMWI GCNNNNNNNGC 1 cut(s) 445
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 2 cut(s) 75, 473
BstUI CGCG 1 cut(s) 466
BstV1I GCAGC 1 cut(s) 423
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 255
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 16
BtuMI TCGCGA 1 cut(s) 466
Cfr13I GGNCC 1 cut(s) 194
CviAII CATG 2 cut(s) 256, 293
CviJI RGCY 6 cut(s) 5, 41, 74, 80, 175, 181
CviKI_1 RGCY 6 cut(s) 5, 41, 74, 80, 175, 181
DdeI CTNAG 2 cut(s) 6, 137
DpnI GATC 3 cut(s) 218, 288, 408
DpnII GATC 3 cut(s) 216, 286, 406
Eam1104I CTCTTC 2 cut(s) 88, 321
EarI CTCTTC 2 cut(s) 88, 321
Eco130I CCWWGG 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 194
Eco57I CTGAAG 3 cut(s) 197, 333, 345
Eco88I CYCGRG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 2 cut(s) 259, 296
FaiI YATR 7 cut(s) 69, 168, 192, 234, 257, 294, 475
FatI CATG 2 cut(s) 255, 292
Fnu4HI GCNGC 1 cut(s) 437
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 437
GluI GCNGC 1 cut(s) 437
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 429
Hin1II CATG 2 cut(s) 259, 296
HinfI GANTC 2 cut(s) 251, 461
HpaII CCGG 1 cut(s) 429
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 3 cut(s) 325, 352, 460
Hpy188III TCNNGA 3 cut(s) 248, 302, 465
HpyAV CCTTC 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 6 cut(s) 16, 208, 242, 292, 413, 439
HpyF10VI GCNNNNNNNGC 1 cut(s) 445
HpyF3I CTNAG 2 cut(s) 6, 137
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 2 cut(s) 259, 296
Kzo9I GATC 3 cut(s) 216, 286, 406
LpnPI CCDG 2 cut(s) 168, 442
Lsp1109I GCAGC 1 cut(s) 423
LweI GCATC 1 cut(s) 97
MaeII ACGT 1 cut(s) 123
MalI GATC 3 cut(s) 218, 288, 408
MboI GATC 3 cut(s) 216, 286, 406
MboII GAAGA 9 cut(s) 41, 62, 105, 223, 226, 317, 338, 339, 407
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 5 cut(s) 106, 141, 346, 352, 413
MseI TTAA 4 cut(s) 36, 99, 201, 276
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 429
Mva1269I GAATGC 1 cut(s) 448
MvnI CGCG 1 cut(s) 466
MwoI GCNNNNNNNGC 1 cut(s) 445
NciI CCSGG 1 cut(s) 429
NcoI CCATGG 1 cut(s) 255
NdeII GATC 3 cut(s) 216, 286, 406
NlaIII CATG 2 cut(s) 259, 296
NlaIV GGNNCC 1 cut(s) 163
NruI TCGCGA 1 cut(s) 466
PctI GAATGC 1 cut(s) 448
PfeI GAWTC 2 cut(s) 251, 461
PkrI GCNGC 1 cut(s) 438
Ple19I CGATCG 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 194
PvuI CGATCG 1 cut(s) 409
RruI TCGCGA 1 cut(s) 466
SaqAI TTAA 4 cut(s) 36, 99, 201, 276
SatI GCNGC 1 cut(s) 437
Sau3AI GATC 3 cut(s) 216, 286, 406
Sau96I GGNCC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 429
SetI ASST 9 cut(s) 76, 82, 126, 152, 177, 199, 207, 275, 357
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 2 cut(s) 75, 473
SinI GGWCC 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 255
TaiI ACGT 1 cut(s) 126
TaqI TCGA 4 cut(s) 91, 341, 405, 452
TfiI GAWTC 2 cut(s) 251, 461
Tru1I TTAA 4 cut(s) 36, 99, 201, 276
Tru9I TTAA 4 cut(s) 36, 99, 201, 276
TseI GCWGC 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.