Rmu_sc0000918.1_g000004

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000918.1
OG0000440
Physical Location & Seq
Forward (+)
5187 .. 8403
3217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000918.1_g000004.1.cds

Sequence Viewer

Length: 1437 bp
atggatccccaaattgttattaacttgttcaacaagcggaaggagtcccttgtgagaaataacttcctctctgaggtggagagatatgtcaaggagaacggacctgaaggtttggaaaaatttattgcttgcaagtcaaaatccataaagccaaatggtggacagaatgatatcaaagctgtgcaggaaatggtgaaaaagaaggaaacaactgctagccaagttagtcaggcagagcctaatcttactgtgaatgaagataaattttcttctaggaagatgaatgaaaaagtcatcgaagttgcagccgacagagaaattctgaagactccacctccaaagaaagtccagaaggagtggacctcagtcaatccgctgcaaactcaaactgatgcaacgttgacttcccttctcggtgataataaacatgaggctacatacgtggcactgaagataaagaatgaggcagagcctaagctcactgggcctgaaaaccgtactgttgcagccatggaaataaatgaaaagctggttgaggttggaacaggtatagaagatccagagtctcctaaagaagtccagaaagagtggacttgtgctctctgtcaggtaactactacatgtgaaagaaatttgaattcccatctgcgagggagaaaacacaaggcagcatatgaggcactgaaagggaaccaggcatttgtgcccaagattgccccagcttcaaccgcaaaaacatccaatcaaccaaataaggagccaggaaagagtattccgaagaaaatggaaatgaaaatgtgcaaggccagaaaaatagtagtccagttccaatcacaaagaagcaatccagcaatggccagaaagggatcaaaacaaaaagttactgtaaatgaaaatgtgcaaggccagaataatagtagtccagctccaatcacaaagaagcaatccagcaatggccagaaagggaaaattgctatacaggtcgagaaggtacaaagtcaacaaccgaagccaaatgaagttccaagggtgaagagttctcctttgcggtgcgcaatttgtagaatacactgtgctgggagagaacacagggcagcatatgaggcactgaaagcaggaaccaggcatttgttccctatttgtcgaatgagtggagtagttacattcaacatggttttgagactgatagctgattcattgaacatgttatcctggtatcgggaagctgtttttgagagtaacccgggctctacttttgttttagaagttgattcatcgagtaatcggtttcagaggcttttccttgcttatgcaggctgtgttgaaggctttgaattctgtcttcctgtattgtatgtggatgagacttttgggaagagtatttacaaggggcagattctttgtccaactggaatgaatagaaatcaaagtaattaa

Protein Analysis

478

Amino Acids

53.34

Weight (kDa)

9.5

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1054
AccB7I CCANNNNNTGG 1 cut(s) 158
AciI CCGC 4 cut(s) 37, 374, 729, 1048
AclI AACGTT 1 cut(s) 398
AclWI GGATC 3 cut(s) 12, 551, 874
AcoI YGGCCR 2 cut(s) 855, 955
AcsI RAATTY 6 cut(s) 119, 263, 318, 631, 637, 1334
AcuI CTGAAG 3 cut(s) 126, 344, 470
AfaI GTAC 2 cut(s) 499, 993
AfiI CCNNNNNNNGG 3 cut(s) 73, 158, 1218
AflIII ACRYGT 2 cut(s) 620, 1203
AgsI TTSAA 7 cut(s) 31, 637, 726, 1168, 1201, 1325, 1334
AjnI CCWGG 4 cut(s) 693, 760, 1121, 1211
AloI GAACNNNNNNTCC 2 cut(s) 1193, 1225
AluBI AGCT 7 cut(s) 179, 478, 529, 722, 926, 1190, 1226
AluI AGCT 7 cut(s) 179, 478, 529, 722, 926, 1190, 1226
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 3 cut(s) 570, 1174, 1358
AlwI GGATC 3 cut(s) 12, 551, 874
Ama87I CYCGRG 1 cut(s) 1243
AoxI GGCC 5 cut(s) 485, 804, 855, 904, 955
ApeKI GCWGC 5 cut(s) 305, 376, 506, 668, 1094
ApoI RAATTY 6 cut(s) 119, 263, 318, 631, 637, 1334
AspLEI GCGC 1 cut(s) 1055
AspS9I GGNCC 3 cut(s) 101, 360, 485
AsuC2I CCSGG 2 cut(s) 1244, 1245
AsuHPI GGTGA 3 cut(s) 205, 428, 1042
AsuNHI GCTAGC 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 1243
AvaII GGWCC 2 cut(s) 101, 360
BaeGI GKGCMC 1 cut(s) 708
BalI TGGCCA 2 cut(s) 857, 957
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 1250
BarI GAAGNNNNNNTAC 2 cut(s) 1367, 1399
BbsI GAAGAC 2 cut(s) 332, 1334
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 5 cut(s) 317, 363, 518, 680, 1106
BccI CCATC 1 cut(s) 651
BciT130I CCWGG 4 cut(s) 695, 762, 1123, 1213
BcnI CCSGG 2 cut(s) 1244, 1245
BcoDI GTCTC 3 cut(s) 570, 1174, 1358
BfaI CTAG 2 cut(s) 216, 273
BisI GCNGC 5 cut(s) 306, 377, 507, 669, 1095
BlsI GCNGC 5 cut(s) 307, 378, 508, 670, 1096
Bme1390I CCNGG 6 cut(s) 695, 762, 1123, 1213, 1244, 1245
Bme18I GGWCC 2 cut(s) 101, 360
BmeT110I CYCGRG 1 cut(s) 1243
BmgT120I GGNCC 3 cut(s) 101, 360, 485
BmiI GGNNCC 4 cut(s) 6, 692, 759, 1120
BmrFI CCNGG 6 cut(s) 695, 762, 1123, 1213, 1244, 1245
BmrI ACTGGG 1 cut(s) 492
BmsI GCATC 1 cut(s) 382
BmtI GCTAGC 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 492
BoxI GACNNNNGTC 1 cut(s) 365
BpiI GAAGAC 2 cut(s) 332, 1334
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu10I CCTNAGC 1 cut(s) 474
BpuMI CCSGG 2 cut(s) 1244, 1245
BsaAI YACGTR 1 cut(s) 442
BsaJI CCNNGG 3 cut(s) 510, 1025, 1243
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 158, 1218
Bse1I ACTGG 3 cut(s) 487, 823, 1414
Bse3DI GCAATG 2 cut(s) 858, 958
BseBI CCWGG 4 cut(s) 695, 762, 1123, 1213
BseDI CCNNGG 3 cut(s) 510, 1025, 1243
BseGI GGATG 2 cut(s) 737, 1366
BseLI CCNNNNNNNGG 3 cut(s) 73, 158, 1218
BseMI GCAATG 2 cut(s) 858, 958
BseMII CTCAG 2 cut(s) 63, 378
BseNI ACTGG 3 cut(s) 487, 823, 1414
BseSI GKGCMC 1 cut(s) 708
BseXI GCAGC 5 cut(s) 317, 363, 518, 680, 1106
BseYI CCCAGC 2 cut(s) 718, 1076
BsgI GTGCAG 1 cut(s) 203
BshFI GGCC 5 cut(s) 487, 806, 857, 906, 957
BsiHKAI GWGCWC 1 cut(s) 601
BsiHKCI CYCGRG 1 cut(s) 1243
BsiSI CCGG 1 cut(s) 1244
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 3 cut(s) 73, 158, 1218
BsmAI GTCTC 3 cut(s) 570, 1174, 1358
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 5 cut(s) 487, 806, 857, 906, 957
BsoBI CYCGRG 1 cut(s) 1243
Bsp1286I GDGCHC 3 cut(s) 601, 708, 1250
Bsp143I GATC 3 cut(s) 4, 556, 866
Bsp19I CCATGG 1 cut(s) 510
BspACI CCGC 4 cut(s) 37, 374, 729, 1048
BspANI GGCC 5 cut(s) 487, 806, 857, 906, 957
BspCNI CTCAG 2 cut(s) 64, 377
BspLI GGNNCC 4 cut(s) 6, 692, 759, 1120
BspOI GCTAGC 1 cut(s) 219
BspPI GGATC 3 cut(s) 12, 551, 874
BsrDI GCAATG 2 cut(s) 858, 958
BsrI ACTGG 3 cut(s) 487, 823, 1414
BssECI CCNNGG 3 cut(s) 510, 1025, 1243
BssMI GATC 3 cut(s) 4, 556, 866
BssT1I CCWWGG 2 cut(s) 510, 1025
Bst2UI CCWGG 4 cut(s) 695, 762, 1123, 1213
Bst4CI ACNGT 5 cut(s) 250, 497, 502, 886, 1073
Bst6I CTCTTC 2 cut(s) 1028, 1370
BstBAI YACGTR 1 cut(s) 442
BstC8I GCNNGC 3 cut(s) 130, 217, 1315
BstDEI CTNAG 3 cut(s) 72, 364, 474
BstDSI CCRYGG 1 cut(s) 510
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 737, 1366
BstHHI GCGC 1 cut(s) 1055
BstKTI GATC 3 cut(s) 7, 559, 869
BstMAI GTCTC 3 cut(s) 570, 1174, 1358
BstMBI GATC 3 cut(s) 4, 556, 866
BstMWI GCNNNNNNNGC 5 cut(s) 484, 677, 728, 1103, 1112
BstNI CCWGG 4 cut(s) 695, 762, 1123, 1213
BstNSI RCATGY 2 cut(s) 624, 1207
BstPAI GACNNNNGTC 1 cut(s) 365
BstSCI CCNGG 6 cut(s) 693, 760, 1121, 1211, 1242, 1243
BstSLI GKGCMC 1 cut(s) 708
BstV1I GCAGC 5 cut(s) 317, 363, 518, 680, 1106
BstV2I GAAGAC 2 cut(s) 332, 1334
BstX2I RGATCY 2 cut(s) 4, 556
BstYI RGATCY 2 cut(s) 4, 556
BsuRI GGCC 5 cut(s) 487, 806, 857, 906, 957
BtgI CCRYGG 1 cut(s) 510
BtsCI GGATG 2 cut(s) 737, 1366
BtsIMutI CAGTG 5 cut(s) 446, 480, 680, 1069, 1106
Cac8I GCNNGC 3 cut(s) 130, 217, 1315
CfoI GCGC 1 cut(s) 1055
Cfr13I GGNCC 3 cut(s) 101, 360, 485
Cfr9I CCCGGG 1 cut(s) 1243
Csp6I GTAC 2 cut(s) 498, 992
CviAII CATG 5 cut(s) 428, 511, 621, 1171, 1204
CviQI GTAC 2 cut(s) 498, 992
DdeI CTNAG 3 cut(s) 72, 364, 474
DpnI GATC 3 cut(s) 6, 558, 868
DpnII GATC 3 cut(s) 4, 556, 866
EaeI YGGCCR 2 cut(s) 855, 955
Eam1104I CTCTTC 2 cut(s) 1028, 1370
EarI CTCTTC 2 cut(s) 1028, 1370
Eco130I CCWWGG 2 cut(s) 510, 1025
Eco24I GRGCYC 1 cut(s) 1250
Eco32I GATATC 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 101, 360
Eco57I CTGAAG 3 cut(s) 126, 344, 470
Eco88I CYCGRG 1 cut(s) 1243
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoRI GAATTC 2 cut(s) 637, 1334
EcoRII CCWGG 4 cut(s) 693, 760, 1121, 1211
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 2 cut(s) 510, 1025
EcoT38I GRGCYC 1 cut(s) 1250
ErhI CCWWGG 2 cut(s) 510, 1025
FaeI CATG 5 cut(s) 431, 514, 624, 1174, 1207
FaqI GGGAC 1 cut(s) 31
FatI CATG 5 cut(s) 427, 510, 620, 1170, 1203
FauNDI CATATG 2 cut(s) 673, 1099
Fnu4HI GCNGC 5 cut(s) 306, 377, 507, 669, 1095
FokI GGATG 2 cut(s) 724, 1373
FriOI GRGCYC 1 cut(s) 1250
Fsp4HI GCNGC 5 cut(s) 306, 377, 507, 669, 1095
FspBI CTAG 2 cut(s) 216, 273
FspI TGCGCA 1 cut(s) 1054
GlaI GCGC 1 cut(s) 1054
GluI GCNGC 5 cut(s) 306, 377, 507, 669, 1095
GsaI CCCAGC 2 cut(s) 722, 1080
HaeIII GGCC 5 cut(s) 487, 806, 857, 906, 957
HapII CCGG 1 cut(s) 1244
HhaI GCGC 1 cut(s) 1055
Hin1II CATG 5 cut(s) 431, 514, 624, 1174, 1207
Hin6I GCGC 1 cut(s) 1053
HinP1I GCGC 1 cut(s) 1053
HincII GTYRAC 2 cut(s) 402, 1001
HindII GTYRAC 2 cut(s) 402, 1001
HinfI GANTC 6 cut(s) 44, 328, 563, 1193, 1271, 1396
HpaII CCGG 1 cut(s) 1244
HphI GGTGA 3 cut(s) 205, 428, 1042
Hpy166II GTNNAC 5 cut(s) 161, 360, 402, 591, 1001
Hpy188I TCNGA 4 cut(s) 73, 324, 777, 1293
Hpy188III TCNNGA 5 cut(s) 349, 560, 580, 985, 1220
Hpy8I GTNNAC 5 cut(s) 161, 360, 402, 591, 1001
HpyAV CCTTC 7 cut(s) 34, 101, 196, 346, 419, 982, 1319
HpyCH4III ACNGT 5 cut(s) 250, 497, 502, 886, 1073
HpyCH4IV ACGT 2 cut(s) 398, 441
HpyCH4V TGCA 9 cut(s) 132, 184, 305, 379, 395, 506, 801, 901, 1313
HpyF10VI GCNNNNNNNGC 5 cut(s) 484, 677, 728, 1103, 1112
HpyF3I CTNAG 3 cut(s) 72, 364, 474
HpySE526I ACGT 2 cut(s) 398, 441
Hsp92II CATG 5 cut(s) 431, 514, 624, 1174, 1207
HspAI GCGC 1 cut(s) 1053
Kzo9I GATC 3 cut(s) 4, 556, 866
LmnI GCTCC 2 cut(s) 757, 931
Lsp1109I GCAGC 5 cut(s) 317, 363, 518, 680, 1106
LweI GCATC 1 cut(s) 382
MaeI CTAG 2 cut(s) 216, 273
MaeII ACGT 2 cut(s) 398, 441
MaeIII GTNAC 4 cut(s) 610, 880, 1159, 1238
MalI GATC 3 cut(s) 6, 558, 868
MboI GATC 3 cut(s) 4, 556, 866
MflI RGATCY 2 cut(s) 4, 556
MhlI GDGCHC 3 cut(s) 601, 708, 1250
MlsI TGGCCA 2 cut(s) 857, 957
MluNI TGGCCA 2 cut(s) 857, 957
MlyI GAGTC 3 cut(s) 53, 322, 572
MmeI TCCRAC 2 cut(s) 520, 1430
Mox20I TGGCCA 2 cut(s) 857, 957
MscI TGGCCA 2 cut(s) 857, 957
MseI TTAA 2 cut(s) 21, 1435
Msp20I TGGCCA 2 cut(s) 857, 957
MspA1I CMGCKG 1 cut(s) 376
MspI CCGG 1 cut(s) 1244
MspR9I CCNGG 6 cut(s) 695, 762, 1123, 1213, 1244, 1245
MvaI CCWGG 4 cut(s) 695, 762, 1123, 1213
MwoI GCNNNNNNNGC 5 cut(s) 484, 677, 728, 1103, 1112
NciI CCSGG 2 cut(s) 1244, 1245
NcoI CCATGG 1 cut(s) 510
NdeI CATATG 2 cut(s) 673, 1099
NdeII GATC 3 cut(s) 4, 556, 866
NheI GCTAGC 1 cut(s) 215
NlaIII CATG 5 cut(s) 431, 514, 624, 1174, 1207
NlaIV GGNNCC 4 cut(s) 6, 692, 759, 1120
NsbI TGCGCA 1 cut(s) 1054
NspI RCATGY 2 cut(s) 624, 1207
PciI ACATGT 2 cut(s) 620, 1203
PfeI GAWTC 3 cut(s) 1193, 1271, 1396
PflMI CCANNNNNTGG 1 cut(s) 158
PkrI GCNGC 5 cut(s) 307, 378, 508, 670, 1096
PleI GAGTC 3 cut(s) 52, 322, 571
PpsI GAGTC 3 cut(s) 52, 322, 571
Ppu21I YACGTR 1 cut(s) 442
PscI ACATGT 2 cut(s) 620, 1203
PshAI GACNNNNGTC 1 cut(s) 365
Psp1406I AACGTT 1 cut(s) 398
Psp6I CCWGG 4 cut(s) 693, 760, 1121, 1211
PspFI CCCAGC 2 cut(s) 718, 1076
PspGI CCWGG 4 cut(s) 693, 760, 1121, 1211
PspN4I GGNNCC 4 cut(s) 6, 692, 759, 1120
PspPI GGNCC 3 cut(s) 101, 360, 485
PsuI RGATCY 2 cut(s) 4, 556
RsaI GTAC 2 cut(s) 499, 993
RsaNI GTAC 2 cut(s) 498, 992
SaqAI TTAA 2 cut(s) 21, 1435
SatI GCNGC 5 cut(s) 306, 377, 507, 669, 1095
Sau3AI GATC 3 cut(s) 4, 556, 866
Sau96I GGNCC 3 cut(s) 101, 360, 485
SchI GAGTC 3 cut(s) 53, 322, 572
ScrFI CCNGG 6 cut(s) 695, 762, 1123, 1213, 1244, 1245
SduI GDGCHC 3 cut(s) 601, 708, 1250
SfaNI GCATC 1 cut(s) 382
SinI GGWCC 2 cut(s) 101, 360
SmaI CCCGGG 1 cut(s) 1245
SsiI CCGC 4 cut(s) 37, 374, 729, 1048
SspMI CTAG 2 cut(s) 216, 273
StyD4I CCNGG 6 cut(s) 693, 760, 1121, 1211, 1242, 1243
StyI CCWWGG 2 cut(s) 510, 1025
TaaI ACNGT 5 cut(s) 250, 497, 502, 886, 1073
TaiI ACGT 2 cut(s) 401, 444
TaqI TCGA 4 cut(s) 297, 984, 1144, 1277
TfiI GAWTC 3 cut(s) 1193, 1271, 1396
Tru1I TTAA 2 cut(s) 21, 1435
Tru9I TTAA 2 cut(s) 21, 1435
TscAI CASTG 5 cut(s) 453, 487, 687, 1076, 1113
TseI GCWGC 5 cut(s) 305, 376, 506, 668, 1094
TspGWI ACGGA 1 cut(s) 114
TspMI CCCGGG 1 cut(s) 1243
TspRI CASTG 5 cut(s) 453, 487, 687, 1076, 1113
Van91I CCANNNNNTGG 1 cut(s) 158
VpaK11BI GGWCC 2 cut(s) 101, 360
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 6 cut(s) 119, 263, 318, 631, 637, 1334
XceI RCATGY 2 cut(s) 624, 1207
XmaI CCCGGG 1 cut(s) 1243
XspI CTAG 2 cut(s) 216, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.