Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000440

Physical Location & Seq

Genomic Coordinates Reverse (-)

27779887 .. 27781599

Gene Structure 1713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG171400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGCTTACTGGGTCTTGTTGGATTTGCGCTCCAATGCTTTCATGTTCTTGCATGGCCTCTCTTTGCTCTGGTCTATCCACTGTATTCTTCCATTAGAGCAATCGAGACAAATTCCATTACAGATACTCAGAAGATAAATACGTATTGGGTCGTCTTCTCATTGATCGTGCTATTTGAACATGCTTTTATGAAGCTCCTTGAATGGTTCCTGCTCTGGCCATACATTAGGCTACTGATTGTCTTCTTTTTGGTGATGCCACATTTTGATGGTGCCTTATATGTCTATAAACACCTTATCTGTCCATGCCTCTCCATGGATCCCCAAATTGTTATCAACTTGTTCAACAAGCGGAAGGAGTCCCTTGCGAGAGATAACTTTCTCTTTGAGGTGGAGAGATATATCAAGGAGAATGGACCTGAAGGTTTGGAAAAATTTATTGCTTGCAAGTTAACGAGGACAAATCTCAATGTAAAAGAGATCGATGCAGTTTCATCCATGGATAATGAAGGGTCAAAATCCATAAAGCCAAATGGTGGACAGAATGATATCAAAGCTGTGCAGGTAATGGTGAAAAAGAAGGAAACAACTGCTAGCCAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0042538 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22 zf-met

Protein Analysis

201

Amino Acids

23.12

Weight (kDa)

8.29

Isoelectric Point (pI)

16.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	27 - 103	1.1e-19	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica	Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis	pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis	RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata	RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora	Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa	Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha	Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana	Rw6G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	553
AccB1I	GGYRCC	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	536
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	2 cut(s)	314, 327
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	2 cut(s)	112, 434
AcuI	CTGAAG	1 cut(s)	441
AfiI	CCNNNNNNNGG	2 cut(s)	316, 536
AgsI	TTSAA	3 cut(s)	179, 203, 346
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	2 cut(s)	196, 557
AluI	AGCT	2 cut(s)	196, 557
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	314, 327
AoxI	GGCC	2 cut(s)	56, 218
ApoI	RAATTY	2 cut(s)	112, 434
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	2 cut(s)	265, 583
AsuNHI	GCTAGC	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	272
BbsI	GAAGAC	2 cut(s)	148, 235
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	599
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	594
BfuAI	ACCTGC	1 cut(s)	553
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	3 cut(s)	209, 274, 321
BmrFI	CCNGG	1 cut(s)	599
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	2 cut(s)	246, 475
BmtI	GCTAGC	1 cut(s)	597
BmuI	ACTGGG	1 cut(s)	20
BpiI	GAAGAC	2 cut(s)	148, 235
Bsa29I	ATCGAT	1 cut(s)	483
BsaAI	YACGTR	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	315, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 536
Bse1I	ACTGG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	599
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	315, 498
BseGI	GGATG	1 cut(s)	494
BseLI	CCNNNNNNNGG	2 cut(s)	316, 536
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	581
BshFI	GGCC	2 cut(s)	58, 220
BshNI	GGYRCC	1 cut(s)	272
BshVI	ATCGAT	1 cut(s)	483
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	2 cut(s)	316, 536
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	58, 220
Bsp143I	GATC	3 cut(s)	165, 319, 480
Bsp19I	CCATGG	2 cut(s)	315, 498
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	2 cut(s)	58, 220
BspCNI	CTCAG	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	483
BspLI	GGNNCC	3 cut(s)	209, 274, 321
BspMI	ACCTGC	1 cut(s)	553
BspOI	GCTAGC	1 cut(s)	597
BspPI	GGATC	2 cut(s)	314, 327
BspT107I	GGYRCC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	315, 498
BssMI	GATC	3 cut(s)	165, 319, 480
BssT1I	CCWWGG	2 cut(s)	315, 498
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	445, 595
BstDEI	CTNAG	1 cut(s)	129
BstDSI	CCRYGG	2 cut(s)	315, 498
BstF5I	GGATG	1 cut(s)	494
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	3 cut(s)	168, 322, 483
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	3 cut(s)	165, 319, 480
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	597
BstSNI	TACGTA	1 cut(s)	144
BstV2I	GAAGAC	2 cut(s)	148, 235
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	58, 220
BsuTUI	ATCGAT	1 cut(s)	483
BtgI	CCRYGG	2 cut(s)	315, 498
BtsCI	GGATG	1 cut(s)	494
BtsIMutI	CAGTG	1 cut(s)	80
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	2 cut(s)	445, 595
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	416
ClaI	ATCGAT	1 cut(s)	483
CviAII	CATG	6 cut(s)	44, 54, 182, 306, 316, 499
CviJI	RGCY	8 cut(s)	6, 58, 196, 220, 232, 529, 557, 597
CviKI_1	RGCY	8 cut(s)	6, 58, 196, 220, 232, 529, 557, 597
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	3 cut(s)	167, 321, 482
DpnII	GATC	3 cut(s)	165, 319, 480
EaeI	YGGCCR	1 cut(s)	218
Eco105I	TACGTA	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	315, 498
Eco32I	GATATC	1 cut(s)	550
Eco47I	GGWCC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	597
EcoRV	GATATC	1 cut(s)	550
EcoT14I	CCWWGG	2 cut(s)	315, 498
ErhI	CCWWGG	2 cut(s)	315, 498
FaeI	CATG	6 cut(s)	47, 57, 185, 309, 319, 502
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	6 cut(s)	43, 53, 181, 305, 315, 498
FokI	GGATG	1 cut(s)	481
FspBI	CTAG	1 cut(s)	594
GlaI	GCGC	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	58, 220
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	6 cut(s)	47, 57, 185, 309, 319, 502
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	453
HindII	GTYRAC	1 cut(s)	453
HinfI	GANTC	1 cut(s)	359
HpaI	GTTAAC	1 cut(s)	453
HphI	GGTGA	2 cut(s)	265, 583
Hpy166II	GTNNAC	2 cut(s)	453, 539
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	453, 539
HpyAV	CCTTC	4 cut(s)	349, 416, 503, 574
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	4 cut(s)	53, 447, 488, 562
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	6 cut(s)	47, 57, 185, 309, 319, 502
HspAI	GCGC	1 cut(s)	29
KspAI	GTTAAC	1 cut(s)	453
Kzo9I	GATC	3 cut(s)	165, 319, 480
LmnI	GCTCC	2 cut(s)	36, 201
LpnPI	CCDG	6 cut(s)	56, 202, 224, 432, 548, 584
LweI	GCATC	2 cut(s)	246, 475
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	1 cut(s)	143
MalI	GATC	3 cut(s)	167, 321, 482
MboI	GATC	3 cut(s)	165, 319, 480
MboII	GAAGA	4 cut(s)	81, 145, 148, 235
MflI	RGATCY	1 cut(s)	319
MlsI	TGGCCA	1 cut(s)	220
MluCI	AATT	3 cut(s)	112, 327, 434
MluNI	TGGCCA	1 cut(s)	220
MlyI	GAGTC	1 cut(s)	368
MnlI	CCTC	4 cut(s)	69, 320, 382, 450
Mox20I	TGGCCA	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	220
MseI	TTAA	1 cut(s)	452
MslI	CAYNNNNRTG	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	599
NcoI	CCATGG	2 cut(s)	315, 498
NdeII	GATC	3 cut(s)	165, 319, 480
NheI	GCTAGC	1 cut(s)	593
NlaIII	CATG	6 cut(s)	47, 57, 185, 309, 319, 502
NlaIV	GGNNCC	3 cut(s)	209, 274, 321
NspI	RCATGY	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	536
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Ppu21I	YACGTR	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	3 cut(s)	209, 274, 321
PspPI	GGNCC	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	452
Sau3AI	GATC	3 cut(s)	165, 319, 480
Sau96I	GGNCC	1 cut(s)	416
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	599
SetI	ASST	9 cut(s)	146, 198, 297, 393, 421, 427, 559, 567, 603
SfaNI	GCATC	2 cut(s)	246, 475
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	267
SnaBI	TACGTA	1 cut(s)	144
Sse9I	AATT	3 cut(s)	112, 327, 434
SsiI	CCGC	1 cut(s)	352
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	2 cut(s)	315, 498
TaaI	ACNGT	1 cut(s)	84
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	2 cut(s)	105, 483
TasI	AATT	3 cut(s)	112, 327, 434
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	1 cut(s)	87
TspDTI	ATGAA	4 cut(s)	32, 206, 483, 522
TspRI	CASTG	1 cut(s)	87
Van91I	CCANNNNNTGG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	2 cut(s)	112, 434
XceI	RCATGY	1 cut(s)	185
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.