Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017552.1

Orthogroup ID

OG0000440

Physical Location & Seq

Genomic Coordinates Forward (+)

766 .. 2189

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017552.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 623 bp

atggatccccaaattgttatcaacttgttcaacaagcggaaggagtcccttgtgagagataactttctctctgaggtggagagatatgtaaaggagaatggacctgaaggtttggaaagatttattgcttgcaagtcaacgaggacaaatctcgatgtaaaagagttcaatgccgtttcatccatggatactgaagcgtcaaaatccataaagccaaatggtgtacagaatgatatcaaagctgtgcaggtaatggcaaaaaagaagcgaacaactgctagtcaagttagtcaggcagagcctaatctcactgtgaatgaagataaattttcttctacgaagatgaataaaaaagccattgaggctgcagcacatagagaaattctgaagacaccacctccaaagaaagtccagaaggagtggaccaccactcaaactgatgcagctttgagttcccctctcggtgataataaagacaaggctacatacgaggcactgcagataaagaatgaggcagatcctaagctcacttggcctgaaaaccgtgctgctgcagctatggaaatatatgaaaagccagttgaggttggaacaggtatagaagatccagagactcctaaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0042538 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22 zf-met

Protein Analysis

207

Amino Acids

23.11

Weight (kDa)

7.71

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica	Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis	pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis	RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata	RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora	Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa	Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha	Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana	Rw6G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	238
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	3 cut(s)	12, 512, 599
AcsI	RAATTY	2 cut(s)	326, 381
AcuI	CTGAAG	3 cut(s)	126, 213, 407
AfaI	GTAC	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	31, 169
AluBI	AGCT	4 cut(s)	242, 446, 526, 557
AluI	AGCT	4 cut(s)	242, 446, 526, 557
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	3 cut(s)	12, 512, 599
AoxI	GGCC	1 cut(s)	533
ApeKI	GCWGC	6 cut(s)	365, 368, 443, 548, 551, 554
ApoI	RAATTY	2 cut(s)	326, 381
AspS9I	GGNCC	2 cut(s)	101, 423
AsuHPI	GGTGA	1 cut(s)	476
AvaII	GGWCC	2 cut(s)	101, 423
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	6 cut(s)	352, 380, 455, 535, 538, 566
BceAI	ACGGC	1 cut(s)	158
BciVI	GTATCC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	3 cut(s)	366, 497, 552
BfuAI	ACCTGC	1 cut(s)	238
BfuI	GTATCC	1 cut(s)	181
BglI	GCCNNNNNGGC	1 cut(s)	362
BisI	GCNGC	6 cut(s)	366, 369, 444, 549, 552, 555
BlsI	GCNGC	6 cut(s)	367, 370, 445, 550, 553, 556
Bme18I	GGWCC	2 cut(s)	101, 423
BmgT120I	GGNCC	2 cut(s)	101, 423
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	430
BpiI	GAAGAC	1 cut(s)	395
BplI	GAGNNNNNCTC	2 cut(s)	442, 474
Bpu10I	CCTNAGC	1 cut(s)	522
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bse1I	ACTGG	1 cut(s)	578
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	578
BseXI	GCAGC	6 cut(s)	352, 380, 455, 535, 538, 566
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	535
BslFI	GGGAC	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	605
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	535
Bsp1407I	TGTACA	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	4, 517, 604
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	535
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	3 cut(s)	370, 501, 556
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	3 cut(s)	12, 512, 599
BsrGI	TGTACA	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	578
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	3 cut(s)	4, 517, 604
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	313, 545
BstAUI	TGTACA	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	72, 522
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	3 cut(s)	7, 520, 607
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	3 cut(s)	4, 517, 604
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 532, 554
BstSFI	CTRYAG	3 cut(s)	366, 497, 552
BstV1I	GCAGC	6 cut(s)	352, 380, 455, 535, 538, 566
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	3 cut(s)	4, 517, 604
BstYI	RGATCY	3 cut(s)	4, 517, 604
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	535
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	179
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	2 cut(s)	309, 494
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	101, 423
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	1 cut(s)	184
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	72, 522
DpnI	GATC	3 cut(s)	6, 519, 606
DpnII	GATC	3 cut(s)	4, 517, 604
Eco130I	CCWWGG	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	101, 423
Eco57I	CTGAAG	3 cut(s)	126, 213, 407
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	187
FaiI	YATR	9 cut(s)	87, 185, 209, 375, 487, 560, 568, 570, 599
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	1 cut(s)	183
Fnu4HI	GCNGC	6 cut(s)	366, 369, 444, 549, 552, 555
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	6 cut(s)	366, 369, 444, 549, 552, 555
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	6 cut(s)	366, 369, 444, 549, 552, 555
HaeIII	GGCC	1 cut(s)	535
HgaI	GACGC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	2 cut(s)	44, 613
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	3 cut(s)	138, 224, 423
Hpy188I	TCNGA	2 cut(s)	73, 387
Hpy188III	TCNNGA	3 cut(s)	152, 412, 608
Hpy8I	GTNNAC	3 cut(s)	138, 224, 423
HpyAV	CCTTC	3 cut(s)	34, 101, 409
HpyCH4III	ACNGT	2 cut(s)	313, 545
HpyCH4V	TGCA	6 cut(s)	132, 247, 368, 443, 499, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 532, 554
HpyF3I	CTNAG	2 cut(s)	72, 522
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	4, 517, 604
LpnPI	CCDG	7 cut(s)	117, 233, 278, 425, 549, 579, 591
Lsp1109I	GCAGC	6 cut(s)	352, 380, 455, 535, 538, 566
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	279
MalI	GATC	3 cut(s)	6, 519, 606
MboI	GATC	3 cut(s)	4, 517, 604
MboII	GAAGA	5 cut(s)	324, 332, 352, 400, 614
MflI	RGATCY	3 cut(s)	4, 517, 604
MluCI	AATT	3 cut(s)	12, 326, 381
MlyI	GAGTC	2 cut(s)	53, 607
MmeI	TCCRAC	1 cut(s)	568
MnlI	CCTC	8 cut(s)	67, 135, 355, 408, 468, 484, 505, 577
MwoI	GCNNNNNNNGC	3 cut(s)	362, 532, 554
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	3 cut(s)	4, 517, 604
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	6
PkrI	GCNGC	6 cut(s)	367, 370, 445, 550, 553, 556
PleI	GAGTC	2 cut(s)	52, 607
PpsI	GAGTC	2 cut(s)	52, 607
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	101, 423
PstI	CTGCAG	3 cut(s)	370, 501, 556
PsuI	RGATCY	3 cut(s)	4, 517, 604
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SatI	GCNGC	6 cut(s)	366, 369, 444, 549, 552, 555
Sau3AI	GATC	3 cut(s)	4, 517, 604
Sau96I	GGNCC	2 cut(s)	101, 423
SchI	GAGTC	2 cut(s)	53, 607
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	3 cut(s)	366, 497, 552
SinI	GGWCC	2 cut(s)	101, 423
Sse9I	AATT	3 cut(s)	12, 326, 381
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	313, 545
TaqI	TCGA	1 cut(s)	153
TasI	AATT	3 cut(s)	12, 326, 381
TatI	WGTACW	1 cut(s)	223
TscAI	CASTG	2 cut(s)	316, 501
TseI	GCWGC	6 cut(s)	365, 368, 443, 548, 551, 554
TspDTI	ATGAA	4 cut(s)	168, 333, 359, 585
TspRI	CASTG	2 cut(s)	316, 501
VpaK11BI	GGWCC	2 cut(s)	101, 423
XapI	RAATTY	2 cut(s)	326, 381
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.