pycom01g01210
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000440
Physical Location & Seq
Forward (+)
1149586 .. 1150669
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g01210.6

Sequence Viewer

Length: 834 bp
ATGCTTCGAAAGTTGCTGAGCTATTCTTTCGTGATGTGTATAGACTTCATGGGTTCCCCAACTCAATTGTTTCTGATTAGGACACCAAATGGGCAAACTGAAGTTGCAAGTCGCTCATTGGGAGATCTTTTGCATTGTTTAGTAGGTGACAATCTGAAGTTATGGGACCAGAAGCTATGTATTGCAGAATTTGCCAACAACAGTTCCATTAATCGCATTAGTGAGCACCAGTTGATCTTGCTCATGTCCCAAACACGAAAAGAATCGATGGTAAGGCTAAAAATTACGTTCATAATGTCAAGTCAAAAATACAAAACTCATGCAAATTCAGAAATGAGAATGGTCGATTTGATGTGGGAGAATGTTTGGGTAGTTTTGATGAAGGGTCACTTTTTAGCTAGAGATTACAACAAATTGTCTGCACGGAAGATTATGCCAAAAGAAATTCTTGAAAAGATTAACCCTAATGCTTATCGTTTGAAGTTACCAAGCCATACTCATACTTTTGGGAGGCGTTTGTTTGCCCCCACTAAATTGTTTGTTCTATACTGGGATTATGAGTTTTTAGCGAGACCCCCCGATACCCATGGGATTGCTAAGACCTCGTCTGCTCCGTCTTCGTATGCACCGTCCTTATCGTGCTTTTATCTCTCTCTGTTCTTTGTTATCTTAAGCACCGACAACCACCATCACACCAGAGCTCGCCAACTCCAGCGAGACCACACCACCAGCCCACCACCACTCTCTCCCTCTCACCTCACCCTGAACCCAGAATTTCAAACTGAGGAAGATCCCGCTCTTACCGTTGTCCGTCCAACTCTAGCCGTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

278

Amino Acids

31.91

Weight (kDa)

9.45

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 797
AciI CCGC 1 cut(s) 795
AclWI GGATC 1 cut(s) 785
AcsI RAATTY 4 cut(s) 188, 325, 444, 773
AcuI CTGAAG 2 cut(s) 120, 176
AflII CTTAAG 1 cut(s) 670
AgsI TTSAA 3 cut(s) 452, 481, 779
AluBI AGCT 4 cut(s) 21, 175, 398, 701
AluI AGCT 4 cut(s) 21, 175, 398, 701
Alw21I GWGCWC 2 cut(s) 228, 703
Alw26I GTCTC 2 cut(s) 565, 711
AlwI GGATC 1 cut(s) 785
ApoI RAATTY 4 cut(s) 188, 325, 444, 773
AseI ATTAAT 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 3 cut(s) 158, 746, 751
AsuII TTCGAA 1 cut(s) 7
AvaII GGWCC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 703
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 2 cut(s) 228, 703
BccI CCATC 2 cut(s) 262, 696
BceAI ACGGC 1 cut(s) 809
BcoDI GTCTC 2 cut(s) 565, 711
BfaI CTAG 2 cut(s) 399, 821
BfrI CTTAAG 1 cut(s) 670
BglII AGATCT 1 cut(s) 124
BlpI GCTNAGC 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 2 cut(s) 55, 167
BmrI ACTGGG 1 cut(s) 559
BmuI ACTGGG 1 cut(s) 559
BpiI GAAGAC 1 cut(s) 609
BpmI CTGGAG 1 cut(s) 695
Bpu1102I GCTNAGC 1 cut(s) 17
Bpu14I TTCGAA 1 cut(s) 7
Bsa29I ATCGAT 1 cut(s) 266
BsaI GGTCTC 2 cut(s) 565, 711
BsaJI CCNNGG 1 cut(s) 586
Bse1I ACTGG 2 cut(s) 229, 554
BseCI ATCGAT 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 586
BseMII CTCAG 2 cut(s) 8, 774
BseNI ACTGG 2 cut(s) 229, 554
BsgI GTGCAG 1 cut(s) 405
BshVI ATCGAT 1 cut(s) 266
BsiHKAI GWGCWC 2 cut(s) 228, 703
BslFI GGGAC 2 cut(s) 179, 232
BsmAI GTCTC 2 cut(s) 565, 711
BsmFI GGGAC 2 cut(s) 179, 232
Bso31I GGTCTC 2 cut(s) 565, 711
Bsp119I TTCGAA 1 cut(s) 7
Bsp1286I GDGCHC 2 cut(s) 228, 703
Bsp143I GATC 3 cut(s) 124, 234, 790
Bsp1720I GCTNAGC 1 cut(s) 17
Bsp19I CCATGG 1 cut(s) 586
BspACI CCGC 1 cut(s) 795
BspCNI CTCAG 2 cut(s) 9, 775
BspDI ATCGAT 1 cut(s) 266
BspLI GGNNCC 2 cut(s) 55, 167
BspPI GGATC 1 cut(s) 785
BspT104I TTCGAA 1 cut(s) 7
BspTI CTTAAG 1 cut(s) 670
BspTNI GGTCTC 2 cut(s) 565, 711
BsrBI CCGCTC 1 cut(s) 797
BsrI ACTGG 2 cut(s) 229, 554
BssECI CCNNGG 1 cut(s) 586
BssMI GATC 3 cut(s) 124, 234, 790
BssT1I CCWWGG 1 cut(s) 586
Bst4CI ACNGT 3 cut(s) 203, 630, 805
BstAFI CTTAAG 1 cut(s) 670
BstAPI GCANNNNNTGC 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 703
BstDEI CTNAG 3 cut(s) 17, 597, 783
BstDSI CCRYGG 1 cut(s) 586
BstKTI GATC 3 cut(s) 127, 237, 793
BstMAI GTCTC 2 cut(s) 565, 711
BstMBI GATC 3 cut(s) 124, 234, 790
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 609
BstX2I RGATCY 2 cut(s) 124, 790
BstYI RGATCY 2 cut(s) 124, 790
Bsu15I ATCGAT 1 cut(s) 266
BsuTUI ATCGAT 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 586
Cac8I GCNNGC 1 cut(s) 703
Cfr13I GGNCC 1 cut(s) 166
ClaI ATCGAT 1 cut(s) 266
CviAII CATG 4 cut(s) 49, 244, 320, 587
CviJI RGCY 8 cut(s) 21, 175, 277, 398, 492, 701, 732, 824
CviKI_1 RGCY 8 cut(s) 21, 175, 277, 398, 492, 701, 732, 824
DdeI CTNAG 3 cut(s) 17, 597, 783
DpnI GATC 3 cut(s) 126, 236, 792
DpnII GATC 3 cut(s) 124, 234, 790
Ecl136II GAGCTC 1 cut(s) 701
Eco130I CCWWGG 1 cut(s) 586
Eco24I GRGCYC 1 cut(s) 703
Eco31I GGTCTC 2 cut(s) 565, 711
Eco47I GGWCC 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 701
Eco57I CTGAAG 2 cut(s) 120, 176
EcoICRI GAGCTC 1 cut(s) 701
EcoT14I CCWWGG 1 cut(s) 586
EcoT38I GRGCYC 1 cut(s) 703
ErhI CCWWGG 1 cut(s) 586
FaeI CATG 4 cut(s) 52, 247, 323, 590
FalI AAGNNNNNCTT 4 cut(s) 374, 406, 432, 464
FaqI GGGAC 2 cut(s) 179, 232
FatI CATG 4 cut(s) 48, 243, 319, 586
FauI CCCGC 1 cut(s) 802
FriOI GRGCYC 1 cut(s) 703
FspBI CTAG 2 cut(s) 399, 821
GsuI CTGGAG 1 cut(s) 695
Hin1II CATG 4 cut(s) 52, 247, 323, 590
HinfI GANTC 1 cut(s) 263
HphI GGTGA 3 cut(s) 158, 746, 751
Hpy188I TCNGA 4 cut(s) 75, 156, 331, 833
Hpy188III TCNNGA 2 cut(s) 31, 449
HpyAV CCTTC 1 cut(s) 376
HpyCH4III ACNGT 3 cut(s) 203, 630, 805
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 6 cut(s) 107, 133, 185, 323, 422, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 3 cut(s) 17, 597, 783
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 4 cut(s) 52, 247, 323, 590
Kzo9I GATC 3 cut(s) 124, 234, 790
LmnI GCTCC 1 cut(s) 616
LpnPI CCDG 8 cut(s) 182, 242, 535, 709, 725, 742, 776, 783
MaeI CTAG 2 cut(s) 399, 821
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 3 cut(s) 146, 386, 483
MalI GATC 3 cut(s) 126, 236, 792
MbiI CCGCTC 1 cut(s) 797
MboI GATC 3 cut(s) 124, 234, 790
MboII GAAGA 3 cut(s) 439, 609, 800
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 2 cut(s) 124, 790
MhlI GDGCHC 2 cut(s) 228, 703
MluCI AATT 8 cut(s) 65, 188, 282, 325, 413, 444, 533, 773
MnlI CCTC 5 cut(s) 504, 613, 760, 767, 778
MseI TTAA 3 cut(s) 210, 459, 671
MspCI CTTAAG 1 cut(s) 670
MunI CAATTG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 191
NcoI CCATGG 1 cut(s) 586
NdeII GATC 3 cut(s) 124, 234, 790
NlaIII CATG 4 cut(s) 52, 247, 323, 590
NlaIV GGNNCC 2 cut(s) 55, 167
NmuCI GTSAC 2 cut(s) 146, 386
NspV TTCGAA 1 cut(s) 7
PcsI WCGNNNNNNNCGW 2 cut(s) 611, 626
PfeI GAWTC 1 cut(s) 263
PflFI GACNNNGTC 1 cut(s) 604
PshBI ATTAAT 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 703
PspN4I GGNNCC 2 cut(s) 55, 167
PspPI GGNCC 1 cut(s) 166
PsuI RGATCY 2 cut(s) 124, 790
PsyI GACNNNGTC 1 cut(s) 604
SacI GAGCTC 1 cut(s) 703
SaqAI TTAA 3 cut(s) 210, 459, 671
Sau3AI GATC 3 cut(s) 124, 234, 790
Sau96I GGNCC 1 cut(s) 166
SduI GDGCHC 2 cut(s) 228, 703
SetI ASST 8 cut(s) 23, 148, 177, 290, 400, 605, 703, 759
SfuI TTCGAA 1 cut(s) 7
SinI GGWCC 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
Sse9I AATT 8 cut(s) 65, 188, 282, 325, 413, 444, 533, 773
SsiI CCGC 1 cut(s) 795
SspMI CTAG 2 cut(s) 399, 821
SstI GAGCTC 1 cut(s) 703
StyI CCWWGG 1 cut(s) 586
TaaI ACNGT 3 cut(s) 203, 630, 805
TaiI ACGT 1 cut(s) 290
TaqI TCGA 3 cut(s) 7, 266, 345
TasI AATT 8 cut(s) 65, 188, 282, 325, 413, 444, 533, 773
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 3 cut(s) 210, 459, 671
Tru9I TTAA 3 cut(s) 210, 459, 671
TseFI GTSAC 2 cut(s) 146, 386
Tsp45I GTSAC 2 cut(s) 146, 386
TspDTI ATGAA 3 cut(s) 37, 280, 395
TspGWI ACGGA 3 cut(s) 439, 603, 800
Tth111I GACNNNGTC 1 cut(s) 604
Vha464I CTTAAG 1 cut(s) 670
VpaK11BI GGWCC 1 cut(s) 166
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 4 cut(s) 188, 325, 444, 773
XspI CTAG 2 cut(s) 399, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.