Rmu_sc0004376.1_g000021

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004376.1
OG0000440
Physical Location & Seq
Reverse (-)
95828 .. 97806
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004376.1_g000021.1.cds

Sequence Viewer

Length: 1188 bp
atggatccccaaattgttatcaactcattcaagaagcggaaggagtcccttgtgagagataactttctctatgaggtggagagatatgtaaaggagaatggacctgaaagtttggaaaaatttattccttgcaagtcaacaaggacaaatctcgatgtaaaagagttgaatgcagtttcatccatggataatgaagcgtcaaaatccttaaagccaaatggtggacagaatgatatcaaagctgtgcaggtaatggcaaaaaagaaggaaacaactgctagccaagttagtcaggcagagcctaatctcactgtgaatgaagatggattttcttctaggaagatgaatgaaaaagtcatcgaagttgcagccgacagagaaattctgaagactccgcctccaaagaaagtccaggagtggacctcagtcaatccgctgcaaactcaaactgatgcaactttgaattcccttctcggtgataataaacacgaggctacatatgaggcactgaagataaagaatgaggcagagcctaagctcacttgccctgaaaaccgtactgttgcttccatggaaataaatgaaaagccggttgaggttggaacaggtatagaagatctagagtctcctaaagaagtccagaaagagtggacttgtgctctctgtcaggtaactacttcaagtgaaagcattttgaattcccacctgcaagggagaagacacaaggcagcatatgaggcactgaatgcaaggaaccaggcatttgtgtccaagattgccccagcttcaactgcaaaaacatccaatcaaccgaataaggagccaggaaacagtattccgagcagtggatcaaaacaaaaagttactgtaagtgaaaatgtgcaaggccagaaaaatagtagtccagcttcaatcacaaagaagcaccacaaactgaaagaggagagcgcagacggtgtatccagcaatggccagaaggggaaaattcctatacacgttgagaaggtacaaagtcaactaccgaagccaaataaagttccaagggtgacgagttctcctttgtggtgcgcaatttgtagcatgcactgtcctgagaaatccatgccgtctcatctcaacggaaaaaaacacaaaaaaaaggcgcaagaactacaagagaacctaatgatgcccaggggccctttgtaa

Protein Analysis

395

Amino Acids

43.66

Weight (kDa)

9.12

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 714
Acc16I TGCGCA 1 cut(s) 1069
Acc36I ACCTGC 2 cut(s) 238, 714
AccB7I CCANNNNNTGG 1 cut(s) 221
AciI CCGC 3 cut(s) 37, 395, 434
AclWI GGATC 2 cut(s) 12, 856
AcoI YGGCCR 1 cut(s) 970
AcsI RAATTY 5 cut(s) 119, 381, 463, 697, 984
AcuI CTGAAG 2 cut(s) 407, 530
AfaI GTAC 2 cut(s) 559, 1008
AfiI CCNNNNNNNGG 2 cut(s) 221, 845
AflIII ACRYGT 1 cut(s) 994
AgsI TTSAA 7 cut(s) 31, 169, 463, 681, 697, 789, 912
AjnI CCWGG 4 cut(s) 411, 756, 823, 1172
AluBI AGCT 4 cut(s) 242, 538, 785, 908
AluI AGCT 4 cut(s) 242, 538, 785, 908
Alw21I GWGCWC 1 cut(s) 661
Alw26I GTCTC 2 cut(s) 630, 1113
AlwI GGATC 2 cut(s) 12, 856
AoxI GGCC 3 cut(s) 886, 970, 1177
ApaI GGGCCC 1 cut(s) 1181
ApeKI GCWGC 3 cut(s) 368, 436, 728
ApoI RAATTY 5 cut(s) 119, 381, 463, 697, 984
AspLEI GCGC 3 cut(s) 950, 1070, 1144
AspS9I GGNCC 4 cut(s) 101, 420, 1177, 1178
AsuHPI GGTGA 2 cut(s) 488, 1057
AsuNHI GCTAGC 1 cut(s) 278
AvaII GGWCC 2 cut(s) 101, 420
BaeGI GKGCMC 1 cut(s) 1181
BalI TGGCCA 1 cut(s) 972
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 1181
BarI GAAGNNNNNNTAC 4 cut(s) 550, 582, 892, 924
BauI CACGAG 1 cut(s) 488
BbsI GAAGAC 2 cut(s) 395, 724
Bbv12I GWGCWC 1 cut(s) 661
BbvI GCAGC 3 cut(s) 380, 423, 740
BccI CCATC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 1090
BciT130I CCWGG 4 cut(s) 413, 758, 825, 1174
BciVI GTATCC 1 cut(s) 970
BcoDI GTCTC 2 cut(s) 630, 1113
BfaI CTAG 3 cut(s) 279, 336, 620
BfuAI ACCTGC 2 cut(s) 238, 714
BfuI GTATCC 1 cut(s) 970
BglII AGATCT 1 cut(s) 616
BisI GCNGC 3 cut(s) 369, 437, 729
BlsI GCNGC 3 cut(s) 370, 438, 730
Bme1390I CCNGG 4 cut(s) 413, 758, 825, 1174
Bme18I GGWCC 2 cut(s) 101, 420
BmgT120I GGNCC 4 cut(s) 101, 420, 1177, 1178
BmiI GGNNCC 5 cut(s) 6, 755, 822, 1178, 1179
BmrFI CCNGG 4 cut(s) 413, 758, 825, 1174
BmsI GCATC 2 cut(s) 442, 1158
BmtI GCTAGC 1 cut(s) 282
BoxI GACNNNNGTC 1 cut(s) 425
BpiI GAAGAC 2 cut(s) 395, 724
BplI GAGNNNNNCTC 2 cut(s) 407, 439
Bpu10I CCTNAGC 1 cut(s) 534
BsaJI CCNNGG 5 cut(s) 183, 570, 1040, 1172, 1173
BsaXI ACNNNNNCTCC 4 cut(s) 382, 412, 1039, 1069
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 845
Bse118I RCCGGY 1 cut(s) 589
Bse3DI GCAATG 1 cut(s) 973
BseBI CCWGG 4 cut(s) 413, 758, 825, 1174
BseDI CCNNGG 5 cut(s) 183, 570, 1040, 1172, 1173
BseGI GGATG 2 cut(s) 179, 800
BseLI CCNNNNNNNGG 2 cut(s) 221, 845
BseMI GCAATG 1 cut(s) 973
BseMII CTCAG 2 cut(s) 438, 1083
BseRI GAGGAG 1 cut(s) 956
BseSI GKGCMC 1 cut(s) 1181
BseXI GCAGC 3 cut(s) 380, 423, 740
BseYI CCCAGC 1 cut(s) 781
BsgI GTGCAG 1 cut(s) 266
BshFI GGCC 3 cut(s) 888, 972, 1179
BsiHKAI GWGCWC 1 cut(s) 661
BsiSI CCGG 1 cut(s) 590
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 2 cut(s) 221, 845
BsmAI GTCTC 2 cut(s) 630, 1113
BsmBI CGTCTC 1 cut(s) 1113
BsmFI GGGAC 1 cut(s) 31
BsmI GAATGC 2 cut(s) 175, 751
BsnI GGCC 3 cut(s) 888, 972, 1179
Bsp120I GGGCCC 1 cut(s) 1177
Bsp1286I GDGCHC 2 cut(s) 661, 1181
Bsp143I GATC 3 cut(s) 4, 616, 848
Bsp19I CCATGG 2 cut(s) 183, 570
BspACI CCGC 3 cut(s) 37, 395, 434
BspANI GGCC 3 cut(s) 888, 972, 1179
BspCNI CTCAG 2 cut(s) 437, 1084
BspLI GGNNCC 5 cut(s) 6, 755, 822, 1178, 1179
BspMI ACCTGC 2 cut(s) 238, 714
BspOI GCTAGC 1 cut(s) 282
BspPI GGATC 2 cut(s) 12, 856
BsrDI GCAATG 1 cut(s) 973
BsrFI RCCGGY 1 cut(s) 589
BssAI RCCGGY 1 cut(s) 589
BssECI CCNNGG 5 cut(s) 183, 570, 1040, 1172, 1173
BssMI GATC 3 cut(s) 4, 616, 848
BssSI CACGAG 1 cut(s) 488
BssT1I CCWWGG 3 cut(s) 183, 570, 1040
Bst2BI CACGAG 1 cut(s) 488
Bst2UI CCWGG 4 cut(s) 413, 758, 825, 1174
Bst4CI ACNGT 7 cut(s) 313, 557, 562, 833, 868, 956, 1088
BstAPI GCANNNNNTGC 1 cut(s) 746
BstC8I GCNNGC 2 cut(s) 280, 1082
BstDEI CTNAG 3 cut(s) 424, 534, 1092
BstDSI CCRYGG 2 cut(s) 183, 570
BstF5I GGATG 2 cut(s) 179, 800
BstHHI GCGC 3 cut(s) 950, 1070, 1144
BstKTI GATC 3 cut(s) 7, 619, 851
BstMAI GTCTC 2 cut(s) 630, 1113
BstMBI GATC 3 cut(s) 4, 616, 848
BstMWI GCNNNNNNNGC 3 cut(s) 737, 746, 791
BstNI CCWGG 4 cut(s) 413, 758, 825, 1174
BstNSI RCATGY 1 cut(s) 1084
BstPAI GACNNNNGTC 1 cut(s) 425
BstSCI CCNGG 4 cut(s) 411, 756, 823, 1172
BstSLI GKGCMC 1 cut(s) 1181
BstV1I GCAGC 3 cut(s) 380, 423, 740
BstV2I GAAGAC 2 cut(s) 395, 724
BstX2I RGATCY 2 cut(s) 4, 616
BstYI RGATCY 2 cut(s) 4, 616
BsuI GTATCC 1 cut(s) 970
BsuRI GGCC 3 cut(s) 888, 972, 1179
BtgI CCRYGG 2 cut(s) 183, 570
BtsCI GGATG 2 cut(s) 179, 800
BtsI GCAGTG 1 cut(s) 850
BtsIMutI CAGTG 5 cut(s) 309, 506, 740, 850, 1084
BveI ACCTGC 2 cut(s) 238, 714
Cac8I GCNNGC 2 cut(s) 280, 1082
CfoI GCGC 3 cut(s) 950, 1070, 1144
Cfr10I RCCGGY 1 cut(s) 589
Cfr13I GGNCC 4 cut(s) 101, 420, 1177, 1178
CseI GACGC 1 cut(s) 186
Csp6I GTAC 2 cut(s) 558, 1007
CviAII CATG 4 cut(s) 184, 571, 1081, 1102
CviQI GTAC 2 cut(s) 558, 1007
DdeI CTNAG 3 cut(s) 424, 534, 1092
DpnI GATC 3 cut(s) 6, 618, 850
DpnII GATC 3 cut(s) 4, 616, 848
EaeI YGGCCR 1 cut(s) 970
EciI GGCGGA 1 cut(s) 384
Eco130I CCWWGG 3 cut(s) 183, 570, 1040
Eco24I GRGCYC 1 cut(s) 1181
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 2 cut(s) 101, 420
Eco57I CTGAAG 2 cut(s) 407, 530
EcoO109I RGGNCCY 2 cut(s) 1177, 1178
EcoRI GAATTC 2 cut(s) 463, 697
EcoRII CCWGG 4 cut(s) 411, 756, 823, 1172
EcoRV GATATC 1 cut(s) 235
EcoT14I CCWWGG 3 cut(s) 183, 570, 1040
EcoT38I GRGCYC 1 cut(s) 1181
ErhI CCWWGG 3 cut(s) 183, 570, 1040
Esp3I CGTCTC 1 cut(s) 1113
FaeI CATG 4 cut(s) 187, 574, 1084, 1105
FaqI GGGAC 1 cut(s) 31
FatI CATG 4 cut(s) 183, 570, 1080, 1101
FauNDI CATATG 2 cut(s) 499, 733
Fnu4HI GCNGC 3 cut(s) 369, 437, 729
FokI GGATG 2 cut(s) 166, 787
FriOI GRGCYC 1 cut(s) 1181
Fsp4HI GCNGC 3 cut(s) 369, 437, 729
FspBI CTAG 3 cut(s) 279, 336, 620
FspI TGCGCA 1 cut(s) 1069
GlaI GCGC 3 cut(s) 949, 1069, 1143
GluI GCNGC 3 cut(s) 369, 437, 729
GsaI CCCAGC 1 cut(s) 785
HaeIII GGCC 3 cut(s) 888, 972, 1179
HapII CCGG 1 cut(s) 590
HgaI GACGC 1 cut(s) 186
HhaI GCGC 3 cut(s) 950, 1070, 1144
Hin1II CATG 4 cut(s) 187, 574, 1084, 1105
Hin6I GCGC 3 cut(s) 948, 1068, 1142
HinP1I GCGC 3 cut(s) 948, 1068, 1142
HincII GTYRAC 2 cut(s) 138, 1016
HindII GTYRAC 2 cut(s) 138, 1016
HinfI GANTC 3 cut(s) 44, 391, 623
HpaII CCGG 1 cut(s) 590
HphI GGTGA 2 cut(s) 488, 1057
Hpy166II GTNNAC 5 cut(s) 138, 224, 420, 651, 1016
Hpy188I TCNGA 2 cut(s) 387, 840
Hpy188III TCNNGA 5 cut(s) 31, 152, 620, 640, 1091
Hpy8I GTNNAC 5 cut(s) 138, 224, 420, 651, 1016
HpyAV CCTTC 5 cut(s) 34, 259, 479, 970, 997
HpyCH4III ACNGT 7 cut(s) 313, 557, 562, 833, 868, 956, 1088
HpyCH4IV ACGT 1 cut(s) 996
HpyF10VI GCNNNNNNNGC 3 cut(s) 737, 746, 791
HpyF3I CTNAG 3 cut(s) 424, 534, 1092
HpySE526I ACGT 1 cut(s) 996
Hsp92II CATG 4 cut(s) 187, 574, 1084, 1105
HspAI GCGC 3 cut(s) 948, 1068, 1142
Kzo9I GATC 3 cut(s) 4, 616, 848
LmnI GCTCC 1 cut(s) 820
Lsp1109I GCAGC 3 cut(s) 380, 423, 740
LweI GCATC 2 cut(s) 442, 1158
MaeI CTAG 3 cut(s) 279, 336, 620
MaeII ACGT 1 cut(s) 996
MaeIII GTNAC 3 cut(s) 670, 862, 1045
MalI GATC 3 cut(s) 6, 618, 850
MboI GATC 3 cut(s) 4, 616, 848
MboII GAAGA 7 cut(s) 324, 332, 352, 400, 523, 626, 729
MflI RGATCY 2 cut(s) 4, 616
MhlI GDGCHC 2 cut(s) 661, 1181
MlsI TGGCCA 1 cut(s) 972
MluCI AATT 7 cut(s) 12, 119, 381, 463, 697, 984, 1071
MluNI TGGCCA 1 cut(s) 972
MlyI GAGTC 3 cut(s) 53, 385, 632
MmeI TCCRAC 1 cut(s) 580
MnlI CCTC 9 cut(s) 67, 408, 433, 484, 496, 517, 589, 730, 934
Mox20I TGGCCA 1 cut(s) 972
MscI TGGCCA 1 cut(s) 972
MseI TTAA 1 cut(s) 209
Msp20I TGGCCA 1 cut(s) 972
MspA1I CMGCKG 1 cut(s) 436
MspI CCGG 1 cut(s) 590
MspR9I CCNGG 4 cut(s) 413, 758, 825, 1174
Mva1269I GAATGC 2 cut(s) 175, 751
MvaI CCWGG 4 cut(s) 413, 758, 825, 1174
MwoI GCNNNNNNNGC 3 cut(s) 737, 746, 791
NcoI CCATGG 2 cut(s) 183, 570
NdeI CATATG 2 cut(s) 499, 733
NdeII GATC 3 cut(s) 4, 616, 848
NheI GCTAGC 1 cut(s) 278
NlaIII CATG 4 cut(s) 187, 574, 1084, 1105
NlaIV GGNNCC 5 cut(s) 6, 755, 822, 1178, 1179
NmuCI GTSAC 1 cut(s) 1045
NsbI TGCGCA 1 cut(s) 1069
NspI RCATGY 1 cut(s) 1084
PaeI GCATGC 1 cut(s) 1084
PaqCI CACCTGC 1 cut(s) 714
PasI CCCWGGG 1 cut(s) 1173
PctI GAATGC 2 cut(s) 175, 751
PflMI CCANNNNNTGG 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 3 cut(s) 370, 438, 730
PleI GAGTC 3 cut(s) 52, 385, 631
PpsI GAGTC 3 cut(s) 52, 385, 631
PshAI GACNNNNGTC 1 cut(s) 425
Psp6I CCWGG 4 cut(s) 411, 756, 823, 1172
PspFI CCCAGC 1 cut(s) 781
PspGI CCWGG 4 cut(s) 411, 756, 823, 1172
PspN4I GGNNCC 5 cut(s) 6, 755, 822, 1178, 1179
PspOMI GGGCCC 1 cut(s) 1177
PspPI GGNCC 4 cut(s) 101, 420, 1177, 1178
PsuI RGATCY 2 cut(s) 4, 616
RsaI GTAC 2 cut(s) 559, 1008
RsaNI GTAC 2 cut(s) 558, 1007
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 3 cut(s) 369, 437, 729
Sau3AI GATC 3 cut(s) 4, 616, 848
Sau96I GGNCC 4 cut(s) 101, 420, 1177, 1178
SchI GAGTC 3 cut(s) 53, 385, 632
ScrFI CCNGG 4 cut(s) 413, 758, 825, 1174
SduI GDGCHC 2 cut(s) 661, 1181
SfaNI GCATC 2 cut(s) 442, 1158
SinI GGWCC 2 cut(s) 101, 420
SphI GCATGC 1 cut(s) 1084
Sse9I AATT 7 cut(s) 12, 119, 381, 463, 697, 984, 1071
SsiI CCGC 3 cut(s) 37, 395, 434
SspMI CTAG 3 cut(s) 279, 336, 620
StyD4I CCNGG 4 cut(s) 411, 756, 823, 1172
StyI CCWWGG 3 cut(s) 183, 570, 1040
TaaI ACNGT 7 cut(s) 313, 557, 562, 833, 868, 956, 1088
TaiI ACGT 1 cut(s) 999
TaqI TCGA 2 cut(s) 153, 360
TasI AATT 7 cut(s) 12, 119, 381, 463, 697, 984, 1071
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 5 cut(s) 316, 513, 747, 850, 1091
TseFI GTSAC 1 cut(s) 1045
TseI GCWGC 3 cut(s) 368, 436, 728
Tsp45I GTSAC 1 cut(s) 1045
TspDTI ATGAA 6 cut(s) 168, 207, 333, 359, 363, 597
TspGWI ACGGA 1 cut(s) 1134
TspRI CASTG 5 cut(s) 316, 513, 747, 850, 1091
Van91I CCANNNNNTGG 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 101, 420
XapI RAATTY 5 cut(s) 119, 381, 463, 697, 984
XbaI TCTAGA 1 cut(s) 619
XceI RCATGY 1 cut(s) 1084
XspI CTAG 3 cut(s) 279, 336, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.