Rh6CG172100

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000440
Physical Location & Seq
Reverse (-)
23898085 .. 23904770
6686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG172100.1

Sequence Viewer

Length: 2907 bp
ATGGATCCCAAAATTGTTATCAACTTGTTCAACAAGCGGAAGGAGTCCCTTGTGAGAGATAACTTTCTCTCTGAGGTGGAGAGATATGTAAAGGAGAATGGACCTGAAGGTTTGGAAAGATTTATTGCTTGCAAGTCAACGAGGACAAATCTCGATGTAAAAGAGTTCAATGCAGTTTCATCCATGGATAATGAAGCGTCAAAATCCATAAAGCCAAATGGTGGACAGAATGATATCAAAGCTGTGCAGGTAATGGCAAAAAAGAAGCGAACAACTGCTAGTCAAGTTAGTCAGGCAGAGCCTAATCTCACTGTGAATGAAGATAAATTTTCTTTTACGAAGATGAATAAAAAAGCCATAGAGGGTGCAGCTGATAGAGAAATTCTGAAGACACCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCACCACTCAAACTGATGCAACTTTGAGTTCCCCTCTCAGTGATAATAAAGACAAGAAAACATACGAGGCACTGAAGATAAAGAATGAGGCAGATCCTAAGCTCACTTGGCCTGAAAACCGTGCTGCTGCAGCTATGGAAATATATGAAAAGCCAGTTGAGGTTGGAACACGTATAGAAGATCCAGAGACTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTCTGTCAAGTAACCACTACATGTGAAAGCAATTTGAATTCCCACCTGCAAGGGCGAAAACACAAGGTAGCATATGAGGCAGTGAAAGCAAGGAACCAAGAATTTTTGCCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCTAATCCACCGAATGAGGTGCCAAGAAAGAGTTCCCCGAGCAGTGGATCAAAACAAAAGGTTACTATCAATGAAAATTCGAAATCCATAGAGGCAAATGGTGGACAGAATGATATCAAAGCTGTGCAGGTAACGGCCAAAAAGAAGGAAACAACTTCTAGCCAAGTTTGTCAGGCGAAGCCTAATCTCACTGTGAATGAAGATAAATTTTATTCTACGAAGATGAATGAAAAAGCCATAGAGGGTGCAGCCGATAGAGAAATTCTGAAGACACCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCACCACTCAAACTGATGCAACTTTGAGTTCCCCTCTCGGTGATAATAAAGACAAGGCTGCATACGAGGCACTGAAGATAAAGAATGAGGCAGATCCTAAGGTCACTTGGCCTGAAAACCGTGCTGCTGCCGCTATGGAAATATATGAAAAGCCAGTTGAGGTTGGAACAGGTATAGAAGATCCAGTGACTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTACTCTCTGTCAAGTAACCACTACATGTGAAAGCAATTTGAATTCCCACCTGCAAGGGCGAAAACAAAAGGCAGCGTATGAGGCAGTTAAAGCAAGGAACCAGGAATTTTTGCCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACCGAATGAGGCGCCAGGAAAGAGTTCCCCGAGCAGTGGATCAAAACAAAAGGTTACTATCAATGAAAATTCGAAATCCATAGAGGCAAATGGTGGACAGAATGATATCAAAGCTGAGCAGGTAACGGCCAAAAAGAAGGAAACAACTTCTAGCCAAGTTTGTCAGGCCGAGCCTAATCTCACTGTGAATGAAGATAAATTTGCTTCTACGAAGATGAATGAAAAAGCCATAGAGGGTGCAGCCGATAGAGAAATTCTGAAGACACCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCACCACTCAAACTGATGCAACTTTGAGTTCCCCTCTCGGTGATAATAAAGACAAGGCTACATACGAGGCACTGAAGATAAAGAATGAGGCAGATCCTAAGCTCACTTGGCCTGAAAACCGTGCTGCTGCCGCTATGGAAATTTATGAAAAGCCAGTTGAGGTTGGAACAGGTATAGAAGATCCAGAGACTCCTAATGAAGTCCAGAAAAAGTGGACTTGTACTCTCTGTCAAGTAACCACTACATGTGAAAGCAATTTGAATTCCCACCTGCAAGGGCGAAAACAAAAGGCAGCGTATGAGGCAGTGAAAGCAAGGAACCAGGAATTTTTGCCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACCGAATGAGGCACCAGGAAAGAGTTCCCCGAGCAGTGGATCAAAACAAAAGGTTACTATCAATGAAAATTCGAAATCCTTAGAGGCAAATGGTGGACAGAATGATATCAAAGCTGTGCAGGTTTGTCCGGCCGAGCCTAATCTTACTGTGAATGAAGATAAATTTGCTTCTACGAAGATGAATGAAAAAGCCATAGAGGGTGCAGCCGATAGAGAAATTCTGAAGACACCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCACAGTCAGTCCGCTACAAACTCAAACTGATGCAACTTTGAGTTCCCCTCCTGGTGATAATAAAGACAAGGCTACATACGAGGCGCTGAAGATAAAGAATGTGGCAGAGGCTAAGCTCACTTGGACTGAAAACTGTGCTGTTGCAGCCATGGAAATATATGAAAAGCCGGTTGAGGTTGGAACAGGTATAGAAGGTGCAGAGACTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTACTCTGTGTCAAGTAACCACTATATGTGAGAGCAATTTGAATTCCCACCTGCAAGGTCGAAAACACAAGGCAGCATATGAGGCAGTGAAAGCAAGGAACCAGGAATTTTTGCCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACCGAATGAGGTGCCAGGAAAGAGTTCCCCGAGCAGTGGATCAAAACAAAAGGTTACTATCAATGAAAATTTGAAATTCCTTGAGGCAAATGGTGGACAGATGATATCAAAGCTGTGCAGGTAA

Protein Analysis

968

Amino Acids

106.15

Weight (kDa)

8.8

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 213 - 237 3.5e-09 Zinc-finger of C2H2 type
zf-met PF12874 436 - 459 1.4e-07 Zinc-finger of C2H2 type
zf-met PF12874 659 - 682 1.4e-07 Zinc-finger of C2H2 type
zf-met PF12874 875 - 899 4.6e-08 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000440)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20313 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11420 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_2g11450 FvH4_5g25851
prunus_persica Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G072900_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G073000_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1 Prupe.8G229300_v2.0.a1
pyrus_communis pycom01g01210 pycom02g12000 pycom10g21410 pycom11g11060 pycom13g24280
rosa_chinensis RchiOBHm_Chr3g0461871 RchiOBHm_Chr4g0427221 RchiOBHm_Chr4g0427231 RchiOBHm_Chr6g0270081 RchiOBHm_Chr6g0270121 RchiOBHm_Chr6g0270151 RchiOBHm_Chr6g0270161 RchiOBHm_Chr6g0270171 RchiOBHm_Chr6g0270181 RchiOBHm_Chr6g0270191 RchiOBHm_Chr7g0229301
rosa_laevigata RLG00000013809 RLG00000013810 RLG00000013812 RLG00000013814 RLG00000013817 RLG00000013818
rosa_multiflora Rmu_sc0000918.1_g000004 Rmu_sc0000918.1_g000019 Rmu_sc0000918.1_g000027 Rmu_sc0002817.1_g000013 Rmu_sc0004366.1_g000009 Rmu_sc0004376.1_g000011 Rmu_sc0004376.1_g000014 Rmu_sc0004376.1_g000021 Rmu_sc0006909.1_g000002 Rmu_sc0011356.1_g000003 Rmu_sc0011369.1_g000005 Rmu_sc0017552.1_g000001
rosa_roxburghii Rroxscaffold_5G00354200 Rroxscaffold_7G00198080 Rroxscaffold_7G00198090 Rroxscaffold_7G00198100 Rroxscaffold_7G00198130 Rroxscaffold_7G00198170
rosa_rugosa Rorug06G0052400 Rorug06G0052500 Rorug06G0053000
rosa_samantha Rh6AG171300 Rh6AG171400 Rh6AG171800 Rh6AG171900 Rh6AG172000 Rh6AG172100 Rh6AG369700 Rh6BG175800 Rh6BG175900 Rh6BG176200 Rh6BG176300 Rh6CG170900 Rh6CG171100 Rh6CG171400 Rh6CG171500 Rh6CG171700 Rh6CG171900 Rh6CG172000 Rh6CG172100
rosa_wichuraiana Rw6G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 4 cut(s) 702, 1371, 2040, 2688
Acc36I ACCTGC 9 cut(s) 238, 702, 907, 1371, 1576, 2040, 2245, 2688, 2892
AccB1I GGYRCC 4 cut(s) 808, 1477, 2146, 2794
AccB7I CCANNNNNTGG 1 cut(s) 221
AciI CCGC 4 cut(s) 37, 1224, 1893, 2408
AcoI YGGCCR 3 cut(s) 924, 1593, 2265
AcuI CTGAAG 9 cut(s) 126, 407, 518, 1076, 1187, 1745, 1856, 2378, 2504
AcyI GRCGYC 1 cut(s) 1478
AfaI GTAC 3 cut(s) 1315, 1984, 2632
AfiI CCNNNNNNNGG 5 cut(s) 221, 833, 1502, 2171, 2819
AflIII ACRYGT 4 cut(s) 593, 668, 1337, 2006
AjnI CCWGG 7 cut(s) 1413, 1480, 2082, 2149, 2446, 2730, 2797
AjuI GAANNNNNNNTTGG 2 cut(s) 805, 837
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 3 cut(s) 605, 1943, 2591
Ama87I CYCGRG 4 cut(s) 826, 1495, 2164, 2812
AoxI GGCC 7 cut(s) 533, 924, 1202, 1593, 1632, 1871, 2265
Asp700I GAANNNNTTC 4 cut(s) 820, 1489, 2158, 2806
AspLEI GCGC 2 cut(s) 1480, 2482
AspS9I GGNCC 5 cut(s) 101, 423, 1092, 1761, 2394
AsuHPI GGTGA 3 cut(s) 1145, 1814, 2462
AsuII TTCGAA 3 cut(s) 869, 1538, 2207
AvaI CYCGRG 4 cut(s) 826, 1495, 2164, 2812
AvaII GGWCC 5 cut(s) 101, 423, 1092, 1761, 2394
AxyI CCTNAGG 1 cut(s) 1191
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 4 cut(s) 808, 1477, 2146, 2794
BbsI GAAGAC 4 cut(s) 395, 1064, 1733, 2366
Bbv12I GWGCWC 1 cut(s) 649
BceAI ACGGC 2 cut(s) 939, 1608
BcgI CGANNNNNNTGC 4 cut(s) 790, 824, 2776, 2810
BciT130I CCWGG 7 cut(s) 1415, 1482, 2084, 2151, 2448, 2732, 2799
BcoDI GTCTC 3 cut(s) 605, 1943, 2591
BfaI CTAG 3 cut(s) 279, 948, 1617
BfmI CTRYAG 1 cut(s) 552
BfoI RGCGCY 2 cut(s) 1481, 2483
BfuAI ACCTGC 9 cut(s) 238, 702, 907, 1371, 1576, 2040, 2245, 2688, 2892
BlpI GCTNAGC 2 cut(s) 1581, 2508
Bme1390I CCNGG 7 cut(s) 1415, 1482, 2084, 2151, 2448, 2732, 2799
Bme18I GGWCC 5 cut(s) 101, 423, 1092, 1761, 2394
BmeT110I CYCGRG 4 cut(s) 826, 1495, 2164, 2812
BmgT120I GGNCC 5 cut(s) 101, 423, 1092, 1761, 2394
BmiI GGNNCC 9 cut(s) 6, 743, 810, 1412, 1479, 2081, 2148, 2729, 2796
BmrFI CCNGG 7 cut(s) 1415, 1482, 2084, 2151, 2448, 2732, 2799
BmsI GCATC 4 cut(s) 430, 1099, 1768, 2416
BoxI GACNNNNGTC 1 cut(s) 2399
BpiI GAAGAC 4 cut(s) 395, 1064, 1733, 2366
BplI GAGNNNNNCTC 8 cut(s) 442, 474, 1111, 1143, 1780, 1812, 2428, 2460
Bpu10I CCTNAGC 2 cut(s) 522, 1860
Bpu1102I GCTNAGC 2 cut(s) 1581, 2508
Bpu14I TTCGAA 3 cut(s) 869, 1538, 2207
BpuEI CTTGAG 1 cut(s) 2885
BsaAI YACGTR 1 cut(s) 596
BsaHI GRCGYC 1 cut(s) 1478
BsaJI CCNNGG 2 cut(s) 183, 2544
BsaXI ACNNNNNCTCC 8 cut(s) 382, 412, 1051, 1081, 1720, 1750, 2353, 2383
Bsc4I CCNNNNNNNGG 5 cut(s) 221, 833, 1502, 2171, 2819
Bse118I RCCGGY 1 cut(s) 2563
Bse1I ACTGG 4 cut(s) 578, 1247, 1277, 1916
Bse21I CCTNAGG 1 cut(s) 1191
BseBI CCWGG 7 cut(s) 1415, 1482, 2084, 2151, 2448, 2732, 2799
BseDI CCNNGG 2 cut(s) 183, 2544
BseGI GGATG 4 cut(s) 179, 1457, 2126, 2774
BseLI CCNNNNNNNGG 5 cut(s) 221, 833, 1502, 2171, 2819
BseMII CTCAG 3 cut(s) 63, 475, 1572
BseNI ACTGG 4 cut(s) 578, 1247, 1277, 1916
BseX3I CGGCCG 1 cut(s) 2265
BseYI CCCAGC 4 cut(s) 769, 1438, 2107, 2755
BsgI GTGCAG 8 cut(s) 266, 387, 935, 1056, 1725, 2273, 2358, 2613
Bsh1285I CGRYCG 1 cut(s) 2268
BshFI GGCC 7 cut(s) 535, 926, 1204, 1595, 1634, 1873, 2267
BshNI GGYRCC 4 cut(s) 808, 1477, 2146, 2794
BsiEI CGRYCG 1 cut(s) 2268
BsiHKAI GWGCWC 1 cut(s) 649
BsiHKCI CYCGRG 4 cut(s) 826, 1495, 2164, 2812
BsiSI CCGG 2 cut(s) 2264, 2564
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 5 cut(s) 221, 833, 1502, 2171, 2819
BsmAI GTCTC 3 cut(s) 605, 1943, 2591
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 7 cut(s) 535, 926, 1204, 1595, 1634, 1873, 2267
BsoBI CYCGRG 4 cut(s) 826, 1495, 2164, 2812
Bsp119I TTCGAA 3 cut(s) 869, 1538, 2207
Bsp1286I GDGCHC 1 cut(s) 649
Bsp1720I GCTNAGC 2 cut(s) 1581, 2508
Bsp19I CCATGG 2 cut(s) 183, 2544
BspACI CCGC 4 cut(s) 37, 1224, 1893, 2408
BspANI GGCC 7 cut(s) 535, 926, 1204, 1595, 1634, 1873, 2267
BspCNI CTCAG 3 cut(s) 64, 474, 1573
BspLI GGNNCC 9 cut(s) 6, 743, 810, 1412, 1479, 2081, 2148, 2729, 2796
BspMAI CTGCAG 1 cut(s) 556
BspMI ACCTGC 9 cut(s) 238, 702, 907, 1371, 1576, 2040, 2245, 2688, 2892
BspT104I TTCGAA 3 cut(s) 869, 1538, 2207
BspT107I GGYRCC 4 cut(s) 808, 1477, 2146, 2794
BsrFI RCCGGY 1 cut(s) 2563
BsrI ACTGG 4 cut(s) 578, 1247, 1277, 1916
BssAI RCCGGY 1 cut(s) 2563
BssECI CCNNGG 2 cut(s) 183, 2544
BssNI GRCGYC 1 cut(s) 1478
BssT1I CCWWGG 2 cut(s) 183, 2544
Bst2UI CCWGG 7 cut(s) 1415, 1482, 2084, 2151, 2448, 2732, 2799
Bst4CI ACNGT 9 cut(s) 313, 545, 982, 1214, 1651, 1883, 2284, 2401, 2531
BstACI GRCGYC 1 cut(s) 1478
BstBAI YACGTR 1 cut(s) 596
BstBI TTCGAA 3 cut(s) 869, 1538, 2207
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 8 cut(s) 72, 461, 522, 1191, 1581, 1860, 2215, 2508
BstDSI CCRYGG 2 cut(s) 183, 2544
BstF5I GGATG 4 cut(s) 179, 1457, 2126, 2774
BstH2I RGCGCY 2 cut(s) 1481, 2483
BstHHI GCGC 2 cut(s) 1480, 2482
BstMAI GTCTC 3 cut(s) 605, 1943, 2591
BstMCI CGRYCG 1 cut(s) 2268
BstNI CCWGG 7 cut(s) 1415, 1482, 2084, 2151, 2448, 2732, 2799
BstNSI RCATGY 3 cut(s) 672, 1341, 2010
BstPAI GACNNNNGTC 1 cut(s) 2399
BstSCI CCNGG 7 cut(s) 1413, 1480, 2082, 2149, 2446, 2730, 2797
BstSFI CTRYAG 1 cut(s) 552
BstV2I GAAGAC 4 cut(s) 395, 1064, 1733, 2366
BstX2I RGATCY 7 cut(s) 4, 517, 604, 1186, 1273, 1855, 1942
BstYI RGATCY 7 cut(s) 4, 517, 604, 1186, 1273, 1855, 1942
BstZI CGGCCG 1 cut(s) 2265
Bsu36I CCTNAGG 1 cut(s) 1191
BsuRI GGCC 7 cut(s) 535, 926, 1204, 1595, 1634, 1873, 2267
BtgI CCRYGG 2 cut(s) 183, 2544
BtsCI GGATG 4 cut(s) 179, 1457, 2126, 2774
BtsI GCAGTG 7 cut(s) 735, 838, 1507, 2073, 2176, 2721, 2824
BveI ACCTGC 9 cut(s) 238, 702, 907, 1371, 1576, 2040, 2245, 2688, 2892
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 2 cut(s) 1480, 2482
Cfr10I RCCGGY 1 cut(s) 2563
Cfr13I GGNCC 5 cut(s) 101, 423, 1092, 1761, 2394
CseI GACGC 1 cut(s) 186
Csp6I GTAC 3 cut(s) 1314, 1983, 2631
CviAII CATG 5 cut(s) 184, 669, 1338, 2007, 2545
CviQI GTAC 3 cut(s) 1314, 1983, 2631
DdeI CTNAG 8 cut(s) 72, 461, 522, 1191, 1581, 1860, 2215, 2508
DinI GGCGCC 1 cut(s) 1479
EaeI YGGCCR 3 cut(s) 924, 1593, 2265
EagI CGGCCG 1 cut(s) 2265
EclXI CGGCCG 1 cut(s) 2265
Eco130I CCWWGG 2 cut(s) 183, 2544
Eco32I GATATC 5 cut(s) 235, 904, 1573, 2242, 2889
Eco47I GGWCC 5 cut(s) 101, 423, 1092, 1761, 2394
Eco52I CGGCCG 1 cut(s) 2265
Eco57I CTGAAG 9 cut(s) 126, 407, 518, 1076, 1187, 1745, 1856, 2378, 2504
Eco81I CCTNAGG 1 cut(s) 1191
Eco88I CYCGRG 4 cut(s) 826, 1495, 2164, 2812
EcoRI GAATTC 4 cut(s) 685, 1354, 2023, 2671
EcoRII CCWGG 7 cut(s) 1413, 1480, 2082, 2149, 2446, 2730, 2797
EcoRV GATATC 5 cut(s) 235, 904, 1573, 2242, 2889
EcoT14I CCWWGG 2 cut(s) 183, 2544
EgeI GGCGCC 1 cut(s) 1479
EheI GGCGCC 1 cut(s) 1479
ErhI CCWWGG 2 cut(s) 183, 2544
FaeI CATG 5 cut(s) 187, 672, 1341, 2010, 2548
FaqI GGGAC 1 cut(s) 31
FatI CATG 5 cut(s) 183, 668, 1337, 2006, 2544
FauNDI CATATG 2 cut(s) 721, 2707
FokI GGATG 4 cut(s) 166, 1444, 2113, 2761
FspBI CTAG 3 cut(s) 279, 948, 1617
GlaI GCGC 2 cut(s) 1479, 2481
GsaI CCCAGC 4 cut(s) 773, 1442, 2111, 2759
HaeII RGCGCY 2 cut(s) 1481, 2483
HaeIII GGCC 7 cut(s) 535, 926, 1204, 1595, 1634, 1873, 2267
HapII CCGG 2 cut(s) 2264, 2564
HgaI GACGC 1 cut(s) 186
HhaI GCGC 2 cut(s) 1480, 2482
Hin1I GRCGYC 1 cut(s) 1478
Hin1II CATG 5 cut(s) 187, 672, 1341, 2010, 2548
Hin6I GCGC 2 cut(s) 1478, 2480
HinP1I GCGC 2 cut(s) 1478, 2480
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 5 cut(s) 44, 613, 1282, 1951, 2599
HpaII CCGG 2 cut(s) 2264, 2564
HphI GGTGA 3 cut(s) 1145, 1814, 2462
Hpy188I TCNGA 5 cut(s) 73, 387, 1056, 1725, 2358
HpyAV CCTTC 9 cut(s) 34, 101, 409, 928, 1078, 1597, 1747, 2380, 2582
HpyCH4III ACNGT 9 cut(s) 313, 545, 982, 1214, 1651, 1883, 2284, 2401, 2531
HpyCH4IV ACGT 1 cut(s) 595
HpyF3I CTNAG 8 cut(s) 72, 461, 522, 1191, 1581, 1860, 2215, 2508
HpySE526I ACGT 1 cut(s) 595
Hsp92I GRCGYC 1 cut(s) 1478
Hsp92II CATG 5 cut(s) 187, 672, 1341, 2010, 2548
HspAI GCGC 2 cut(s) 1478, 2480
KasI GGCGCC 1 cut(s) 1477
LweI GCATC 4 cut(s) 430, 1099, 1768, 2416
MaeI CTAG 3 cut(s) 279, 948, 1617
MaeII ACGT 1 cut(s) 595
MflI RGATCY 7 cut(s) 4, 517, 604, 1186, 1273, 1855, 1942
MhlI GDGCHC 1 cut(s) 649
Mly113I GGCGCC 1 cut(s) 1478
MlyI GAGTC 5 cut(s) 53, 607, 1276, 1945, 2593
MmeI TCCRAC 4 cut(s) 568, 1237, 1906, 2554
MroXI GAANNNNTTC 4 cut(s) 820, 1489, 2158, 2806
MseI TTAA 1 cut(s) 1401
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 2 cut(s) 2264, 2564
MspR9I CCNGG 7 cut(s) 1415, 1482, 2084, 2151, 2448, 2732, 2799
MvaI CCWGG 7 cut(s) 1415, 1482, 2084, 2151, 2448, 2732, 2799
NarI GGCGCC 1 cut(s) 1478
NcoI CCATGG 2 cut(s) 183, 2544
NdeI CATATG 2 cut(s) 721, 2707
NlaIII CATG 5 cut(s) 187, 672, 1341, 2010, 2548
NlaIV GGNNCC 9 cut(s) 6, 743, 810, 1412, 1479, 2081, 2148, 2729, 2796
NmeAIII GCCGAG 2 cut(s) 1660, 2293
NmuCI GTSAC 2 cut(s) 1195, 1279
NspI RCATGY 3 cut(s) 672, 1341, 2010
NspV TTCGAA 3 cut(s) 869, 1538, 2207
PaqCI CACCTGC 4 cut(s) 702, 1371, 2040, 2688
PciI ACATGT 3 cut(s) 668, 1337, 2006
PdmI GAANNNNTTC 4 cut(s) 820, 1489, 2158, 2806
PflMI CCANNNNNTGG 1 cut(s) 221
PleI GAGTC 5 cut(s) 52, 607, 1276, 1945, 2593
PluTI GGCGCC 1 cut(s) 1481
PpsI GAGTC 5 cut(s) 52, 607, 1276, 1945, 2593
Ppu21I YACGTR 1 cut(s) 596
PscI ACATGT 3 cut(s) 668, 1337, 2006
PshAI GACNNNNGTC 1 cut(s) 2399
Psp6I CCWGG 7 cut(s) 1413, 1480, 2082, 2149, 2446, 2730, 2797
PspFI CCCAGC 4 cut(s) 769, 1438, 2107, 2755
PspGI CCWGG 7 cut(s) 1413, 1480, 2082, 2149, 2446, 2730, 2797
PspN4I GGNNCC 9 cut(s) 6, 743, 810, 1412, 1479, 2081, 2148, 2729, 2796
PspPI GGNCC 5 cut(s) 101, 423, 1092, 1761, 2394
PstI CTGCAG 1 cut(s) 556
PsuI RGATCY 7 cut(s) 4, 517, 604, 1186, 1273, 1855, 1942
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 3 cut(s) 1315, 1984, 2632
RsaNI GTAC 3 cut(s) 1314, 1983, 2631
SaqAI TTAA 1 cut(s) 1401
Sau96I GGNCC 5 cut(s) 101, 423, 1092, 1761, 2394
SchI GAGTC 5 cut(s) 53, 607, 1276, 1945, 2593
ScrFI CCNGG 7 cut(s) 1415, 1482, 2084, 2151, 2448, 2732, 2799
SduI GDGCHC 1 cut(s) 649
SfaNI GCATC 4 cut(s) 430, 1099, 1768, 2416
SfcI CTRYAG 1 cut(s) 552
SfoI GGCGCC 1 cut(s) 1479
SfuI TTCGAA 3 cut(s) 869, 1538, 2207
SinI GGWCC 5 cut(s) 101, 423, 1092, 1761, 2394
SmlI CTYRAG 1 cut(s) 2864
SmoI CTYRAG 1 cut(s) 2864
SsiI CCGC 4 cut(s) 37, 1224, 1893, 2408
SspDI GGCGCC 1 cut(s) 1477
SspMI CTAG 3 cut(s) 279, 948, 1617
StyD4I CCNGG 7 cut(s) 1413, 1480, 2082, 2149, 2446, 2730, 2797
StyI CCWWGG 2 cut(s) 183, 2544
TaaI ACNGT 9 cut(s) 313, 545, 982, 1214, 1651, 1883, 2284, 2401, 2531
TaiI ACGT 1 cut(s) 598
TaqI TCGA 5 cut(s) 153, 869, 1538, 2207, 2689
TatI WGTACW 3 cut(s) 1313, 1982, 2630
TauI GCSGC 2 cut(s) 1226, 1895
Tru1I TTAA 1 cut(s) 1401
Tru9I TTAA 1 cut(s) 1401
TseFI GTSAC 2 cut(s) 1195, 1279
Tsp45I GTSAC 2 cut(s) 1195, 1279
Van91I CCANNNNNTGG 1 cut(s) 221
VpaK11BI GGWCC 5 cut(s) 101, 423, 1092, 1761, 2394
XceI RCATGY 3 cut(s) 672, 1341, 2010
XmnI GAANNNNTTC 4 cut(s) 820, 1489, 2158, 2806
XspI CTAG 3 cut(s) 279, 948, 1617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.