Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

23211414 .. 23213042

Gene Structure 1629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGTTCAGATTCTCAGTACCAGATTCCGGCCATAGCGTTCACAATCAACTCTAGGGAGGTGGACCGAGGAACTGATGAGTGGTACCATCTGTGCAAGATGGTCAGAGAGGCTTGTGAAAATTATGGTTGCTTTGAAATTTTGTATGATAAGATACCTTCCCAGTTAAGAGCTGAAACCTTCTCTGTGTCAAGGCAACTTTTCAGCCTTCCACTTGAGAAAAAGAAGAAAAACCTTAATCCAAAGCCTTACCAGGGTTACCTCGCACCAAGTGACACAGCTCCCTTGTATGAGAGCTTCGGCCTAGAGGAAGCCTCCAATTATGAATCCCTTAGAAGCTTGACAGAAGAATTATCTCCCAATGGTCATGATCAGTTTTGCACTGTCATTTCTATGATGAAGCAGCTGGATGAGTTGAAAGAAATGATTAACTTGATGATTCTTGATAGTTATGGGTTGGGAGAGAATTCAACTTCGACTTTGCAGTCTAAGACACTGCTACGGATAATGAAATACCGGGCACCTCCTTCGAAGGACTACACTACGGCGCTCCCGGCTCACACTGACAAGGGGTTGGGCACAATTCTTTGTGATGATCAAGTTTCAGGTCTTGAAGTTGAAACAAAGGATGGCCAATGGGTCAAGTTGTCTCTATCTCCTCGTTCCTTGGTCTTTTTTGTTGCAGATTCGCTCATGGCATGGAGCAATGGAAGAATGCATTCTGTGAAGCATCGAGTGATGATGCGTGGAGAAAAAGAACGATATTCTTTAGGAATATTTGCAGTTCCATTTGAGGGTGCCATCATTAAGGCACAAAAGGAGCTAGTAGATGAAGAACACCCCCAAATTCTTAACGATTTTGATTATACAGAGTTTAGCAAGTTCTTTGCTTCGGAAAAAGGAAGGCTCGTTGCCCCAGAAAAGCAAGTTTTCGTATATGCTGGAATTAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

319

Amino Acids

36.12

Weight (kDa)

5.42

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	25 - 90	3e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	169 - 261	6.7e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	484
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	3 cut(s)	84, 520, 797
AcoI	YGGCCR	2 cut(s)	30, 631
AcsI	RAATTY	3 cut(s)	138, 466, 846
AdeI	CACNNNGTG	1 cut(s)	272
AfaI	GTAC	2 cut(s)	20, 86
AfiI	CCNNNNNNNGG	3 cut(s)	28, 254, 794
AgsI	TTSAA	5 cut(s)	137, 418, 471, 614, 620
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	6 cut(s)	173, 281, 297, 339, 406, 823
AluI	AGCT	6 cut(s)	173, 281, 297, 339, 406, 823
Alw26I	GTCTC	1 cut(s)	654
AoxI	GGCC	3 cut(s)	30, 301, 631
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	3 cut(s)	138, 466, 846
Asp700I	GAANNNNTTC	1 cut(s)	718
Asp718I	GGTACC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	2 cut(s)	518, 554
AsuII	TTCGAA	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	2 cut(s)	523, 581
BalI	TGGCCA	1 cut(s)	633
BanI	GGYRCC	3 cut(s)	84, 520, 797
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	4 cut(s)	94, 96, 623, 809
BceAI	ACGGC	1 cut(s)	561
BcgI	CGANNNNNNTGC	2 cut(s)	510, 544
BciT130I	CCWGG	1 cut(s)	254
BclI	TGATCA	2 cut(s)	370, 595
BcnI	CCSGG	2 cut(s)	518, 554
BcoDI	GTCTC	1 cut(s)	654
BfaI	CTAG	3 cut(s)	54, 305, 824
BfoI	RGCGCY	1 cut(s)	551
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	3 cut(s)	254, 518, 554
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	3 cut(s)	86, 522, 799
BmrFI	CCNGG	3 cut(s)	254, 518, 554
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	732, 739
BmuI	ACTGGG	1 cut(s)	157
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
Bpu14I	TTCGAA	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	518, 554
BsaJI	CCNNGG	3 cut(s)	67, 253, 666
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 254, 794
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	712
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	3 cut(s)	67, 253, 666
BseGI	GGATG	2 cut(s)	415, 634
BseLI	CCNNNNNNNGG	3 cut(s)	28, 254, 794
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	648
BseSI	GKGCMC	2 cut(s)	523, 581
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	3 cut(s)	32, 303, 633
BshNI	GGYRCC	3 cut(s)	84, 520, 797
BsiSI	CCGG	3 cut(s)	29, 517, 554
BslI	CCNNNNNNNGG	3 cut(s)	28, 254, 794
BsmAI	GTCTC	1 cut(s)	654
BsmI	GAATGC	2 cut(s)	718, 720
BsnI	GGCC	3 cut(s)	32, 303, 633
Bsp119I	TTCGAA	1 cut(s)	530
Bsp1286I	GDGCHC	2 cut(s)	523, 581
Bsp143I	GATC	2 cut(s)	370, 595
BspANI	GGCC	3 cut(s)	32, 303, 633
BspCNI	CTCAG	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	3 cut(s)	86, 522, 799
BspT104I	TTCGAA	1 cut(s)	530
BspT107I	GGYRCC	3 cut(s)	84, 520, 797
BsrDI	GCAATG	1 cut(s)	712
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	3 cut(s)	67, 253, 666
BssMI	GATC	2 cut(s)	370, 595
BssT1I	CCWWGG	1 cut(s)	666
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	530
BstDEI	CTNAG	3 cut(s)	15, 332, 489
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	415, 634
BstH2I	RGCGCY	1 cut(s)	551
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	2 cut(s)	373, 598
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	2 cut(s)	370, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNI	CCWGG	1 cut(s)	254
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	252, 516, 552
BstSLI	GKGCMC	2 cut(s)	523, 581
BstV1I	GCAGC	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	32, 303, 633
BtsCI	GGATG	2 cut(s)	415, 634
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	3 cut(s)	381, 494, 561
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	19, 85
CviAII	CATG	3 cut(s)	368, 694, 699
CviQI	GTAC	2 cut(s)	19, 85
DdeI	CTNAG	3 cut(s)	15, 332, 489
DpnI	GATC	2 cut(s)	372, 597
DpnII	GATC	2 cut(s)	370, 595
DraIII	CACNNNGTG	1 cut(s)	272
DrdI	GACNNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	1 cut(s)	484
EaeI	YGGCCR	2 cut(s)	30, 631
Eco130I	CCWWGG	1 cut(s)	666
Eco47I	GGWCC	1 cut(s)	64
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	666
EcoT22I	ATGCAT	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	3 cut(s)	371, 697, 702
FatI	CATG	3 cut(s)	367, 693, 698
FbaI	TGATCA	2 cut(s)	370, 595
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	2 cut(s)	422, 641
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	3 cut(s)	54, 305, 824
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	551
HaeIII	GGCC	3 cut(s)	32, 303, 633
HapII	CCGG	3 cut(s)	29, 517, 554
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	3 cut(s)	371, 697, 702
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	5 cut(s)	11, 25, 326, 439, 686
HpaII	CCGG	3 cut(s)	29, 517, 554
Hpy166II	GTNNAC	2 cut(s)	42, 64
Hpy188I	TCNGA	3 cut(s)	10, 107, 895
Hpy188III	TCNNGA	3 cut(s)	368, 443, 611
Hpy8I	GTNNAC	2 cut(s)	42, 64
HpyAV	CCTTC	6 cut(s)	168, 190, 218, 526, 537, 897
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4V	TGCA	6 cut(s)	96, 381, 484, 683, 718, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	3 cut(s)	15, 332, 489
Hsp92II	CATG	3 cut(s)	371, 697, 702
HspAI	GCGC	1 cut(s)	548
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	370, 595
Kzo9I	GATC	2 cut(s)	370, 595
LmnI	GCTCC	4 cut(s)	286, 555, 702, 820
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	2 cut(s)	732, 739
MaeI	CTAG	3 cut(s)	54, 305, 824
MaeIII	GTNAC	2 cut(s)	257, 272
MalI	GATC	2 cut(s)	372, 597
MboI	GATC	2 cut(s)	370, 595
MboII	GAAGA	4 cut(s)	238, 359, 723, 845
MhlI	GDGCHC	2 cut(s)	523, 581
MlsI	TGGCCA	1 cut(s)	633
MluCI	AATT	8 cut(s)	121, 138, 319, 350, 466, 582, 846, 945
MluNI	TGGCCA	1 cut(s)	633
MnlI	CCTC	9 cut(s)	52, 62, 103, 272, 301, 325, 534, 669, 787
Mox20I	TGGCCA	1 cut(s)	633
Mph1103I	ATGCAT	1 cut(s)	720
MroXI	GAANNNNTTC	1 cut(s)	718
MscI	TGGCCA	1 cut(s)	633
MseI	TTAA	5 cut(s)	167, 237, 429, 807, 852
MslI	CAYNNNNRTG	1 cut(s)	392
Msp20I	TGGCCA	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	3 cut(s)	29, 517, 554
MspR9I	CCNGG	3 cut(s)	254, 518, 554
Mva1269I	GAATGC	2 cut(s)	718, 720
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	554
NciI	CCSGG	2 cut(s)	518, 554
NdeII	GATC	2 cut(s)	370, 595
NlaIII	CATG	3 cut(s)	371, 697, 702
NlaIV	GGNNCC	3 cut(s)	86, 522, 799
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	720
NspV	TTCGAA	1 cut(s)	530
PagI	TCATGA	1 cut(s)	367
PctI	GAATGC	2 cut(s)	718, 720
PdmI	GAANNNNTTC	1 cut(s)	718
PfeI	GAWTC	5 cut(s)	11, 25, 326, 439, 686
PkrI	GCNGC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	3 cut(s)	86, 522, 799
PspPI	GGNCC	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	2 cut(s)	20, 86
RsaNI	GTAC	2 cut(s)	19, 85
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	5 cut(s)	167, 237, 429, 807, 852
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	2 cut(s)	370, 595
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	3 cut(s)	254, 518, 554
SduI	GDGCHC	2 cut(s)	523, 581
SfaNI	GCATC	2 cut(s)	732, 739
SfuI	TTCGAA	1 cut(s)	530
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	8 cut(s)	121, 138, 319, 350, 466, 582, 846, 945
SspI	AATATT	1 cut(s)	777
SspMI	CTAG	3 cut(s)	54, 305, 824
StyD4I	CCNGG	3 cut(s)	252, 516, 552
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	3 cut(s)	476, 530, 733
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	8 cut(s)	121, 138, 319, 350, 466, 582, 846, 945
TfiI	GAWTC	5 cut(s)	11, 25, 326, 439, 686
Tru1I	TTAA	5 cut(s)	167, 237, 429, 807, 852
Tru9I	TTAA	5 cut(s)	167, 237, 429, 807, 852
TscAI	CASTG	3 cut(s)	388, 501, 568
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	4 cut(s)	339, 413, 524, 846
TspGWI	ACGGA	1 cut(s)	517
TspRI	CASTG	3 cut(s)	388, 501, 568
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	3 cut(s)	138, 466, 846
XmnI	GAANNNNTTC	1 cut(s)	718
XspI	CTAG	3 cut(s)	54, 305, 824
Zsp2I	ATGCAT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.