Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

84051123 .. 84052592

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G048330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGTTCAGATTCTCAATACCAGATTCCGGCAATAGAATTCACAATGAATTCGCTTGAAGTGGACCGAGGAACTGATGAGTGGTACCATCTGTGCAAGAAGGTTCGAGAGGCTTGTGAAACTTATGGTTGCTTCGAAATTGTGTATGATAAGATACCTCCGCAGACAAAAGCCGAAACCCTTTCAGCTTCAAGGAAACTTTACAGCCTTCCACTTGAGACAAAGAAGAACAACCTTACCCCAAACCGTTACCAGGGTTACGTTGGACCGGGTGTCACTGCTCCCTTGTATGAAGGCTTTGGCTTTCAGGAAGCATCCAACTATGAATCCCTTAGAAGCTTCACAGAAGAAATATGGTCTCATGACCAGTTTTGCACTGTCCTTTCTATGATGAAGCAGCTGGATGAGCTGAAAGATATGATTCACTTGATGATTCTTGATAGCTATGGTTTGGAAAAATCATCAAATTTGATCATGGTGTCTAAGACGGTGCTACGGTTACATAAGTACACGACACGTCCTTCAGGGGAGTACGCGATGGCTGCCTCGGCTCACACTGACAAGACTTTTAGCACAATCCTTTTCGATGATCAAGTTTCAGGTCTTGAAGTTCAAACCAAGGACGAACAATGGGTCAAGTTGCCTATATCTCCTTGCTCTTTCATCTTTGTTGTTGGAGACTTCCTCATGGCGTGGAGCAGTGGCAGAATGCATTCTGTGAAGCATCGGGTGATGATGTGTGGGGAAAAAGAACGACATTCCTTAATATCATCTGCACTTCCAATAGAGGGTTCCATCATCAAAGCACAAAAGGAGCTAGTAGATGAAGACTACCCACAAATTCTTAAAGATTTCGACTATACAGAATTTTTCAACTTCATCTGTTCATCAGAAGGAAGAGCCATTGATTCACAAATGCAAGTTTATGCATTTGCTGGAATTGGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

316

Amino Acids

35.99

Weight (kDa)

5.19

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	24 - 92	8.1e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	164 - 256	8.5e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	84
AccII	CGCG	1 cut(s)	536
AciI	CCGC	1 cut(s)	161
AcsI	RAATTY	5 cut(s)	38, 49, 466, 840, 866
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	3 cut(s)	86, 509, 533
AfiI	CCNNNNNNNGG	3 cut(s)	28, 253, 788
AflIII	ACRYGT	1 cut(s)	515
AgsI	TTSAA	5 cut(s)	59, 192, 608, 614, 874
AhdI	GACNNNNNGTC	1 cut(s)	272
AjiI	CACGTC	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	252
AjuI	GAANNNNNNNTTGG	2 cut(s)	775, 807
AluBI	AGCT	6 cut(s)	188, 339, 400, 409, 444, 817
AluI	AGCT	6 cut(s)	188, 339, 400, 409, 444, 817
Alw26I	GTCTC	3 cut(s)	212, 363, 672
ApeKI	GCWGC	2 cut(s)	397, 542
ApoI	RAATTY	5 cut(s)	38, 49, 466, 840, 866
ArsI	GACNNNNNNTTYG	2 cut(s)	618, 650
Asp700I	GAANNNNTTC	1 cut(s)	712
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	64, 266
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	742
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	64, 266
BanI	GGYRCC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	834
BbvI	GCAGC	2 cut(s)	409, 529
BccI	CCATC	3 cut(s)	96, 532, 803
BciT130I	CCWGG	1 cut(s)	254
BclI	TGATCA	2 cut(s)	471, 589
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	3 cut(s)	212, 363, 672
BfaI	CTAG	1 cut(s)	818
BisI	GCNGC	2 cut(s)	398, 543
BlsI	GCNGC	2 cut(s)	399, 544
Bme1390I	CCNGG	2 cut(s)	254, 270
Bme18I	GGWCC	2 cut(s)	64, 266
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgBI	CACGTC	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	64, 266
BmiI	GGNNCC	2 cut(s)	86, 793
BmrFI	CCNGG	2 cut(s)	254, 270
BmsI	GCATC	2 cut(s)	323, 733
BpiI	GAAGAC	1 cut(s)	834
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	4 cut(s)	67, 253, 546, 618
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 253, 788
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	4 cut(s)	67, 253, 546, 618
BseGI	GGATG	2 cut(s)	314, 409
BseLI	CCNNNNNNNGG	3 cut(s)	28, 253, 788
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	409, 529
BsgI	GTGCAG	1 cut(s)	759
Bsh1236I	CGCG	1 cut(s)	536
BshNI	GGYRCC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	29, 269
BslI	CCNNNNNNNGG	3 cut(s)	28, 253, 788
BsmAI	GTCTC	3 cut(s)	212, 363, 672
BsmI	GAATGC	2 cut(s)	712, 714
Bso31I	GGTCTC	1 cut(s)	363
Bsp119I	TTCGAA	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	471, 589
BspACI	CCGC	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	536
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	86, 793
BspQI	GCTCTTC	1 cut(s)	892
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	84
BspTNI	GGTCTC	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	4 cut(s)	67, 253, 546, 618
BssMI	GATC	2 cut(s)	471, 589
BssT1I	CCWWGG	1 cut(s)	618
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	4 cut(s)	248, 379, 490, 498
Bst6I	CTCTTC	1 cut(s)	892
BstBI	TTCGAA	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	332, 483
BstF5I	GGATG	2 cut(s)	314, 409
BstFNI	CGCG	1 cut(s)	536
BstKTI	GATC	2 cut(s)	474, 592
BstMAI	GTCTC	3 cut(s)	212, 363, 672
BstMBI	GATC	2 cut(s)	471, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	406, 542, 548
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	252, 268
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	2 cut(s)	409, 529
BstV2I	GAAGAC	1 cut(s)	834
BtgZI	GCGATG	1 cut(s)	551
BtrI	CACGTC	1 cut(s)	518
BtsCI	GGATG	2 cut(s)	314, 409
BtsI	GCAGTG	2 cut(s)	276, 706
BtsIMutI	CAGTG	4 cut(s)	276, 375, 555, 706
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	64, 266
Csp6I	GTAC	3 cut(s)	85, 508, 532
CviAII	CATG	3 cut(s)	362, 475, 688
CviQI	GTAC	3 cut(s)	85, 508, 532
DdeI	CTNAG	2 cut(s)	332, 483
DpnI	GATC	2 cut(s)	473, 591
DpnII	GATC	2 cut(s)	471, 589
DriI	GACNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	892
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	892
Eco130I	CCWWGG	1 cut(s)	618
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	64, 266
Eco57I	CTGAAG	1 cut(s)	507
EcoRI	GAATTC	2 cut(s)	38, 49
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	618
EcoT22I	ATGCAT	2 cut(s)	714, 931
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	3 cut(s)	365, 478, 691
FatI	CATG	3 cut(s)	361, 474, 687
FbaI	TGATCA	2 cut(s)	471, 589
Fnu4HI	GCNGC	2 cut(s)	398, 543
FokI	GGATG	2 cut(s)	301, 416
Fsp4HI	GCNGC	2 cut(s)	398, 543
FspBI	CTAG	1 cut(s)	818
GluI	GCNGC	2 cut(s)	398, 543
HapII	CCGG	2 cut(s)	29, 269
Hin1II	CATG	3 cut(s)	365, 478, 691
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	6 cut(s)	11, 25, 326, 421, 433, 908
HpaII	CCGG	2 cut(s)	29, 269
HphI	GGTGA	1 cut(s)	742
Hpy166II	GTNNAC	2 cut(s)	64, 510
Hpy188I	TCNGA	2 cut(s)	10, 892
Hpy188III	TCNNGA	5 cut(s)	107, 308, 362, 437, 605
Hpy8I	GTNNAC	2 cut(s)	64, 510
HpyAV	CCTTC	5 cut(s)	94, 218, 287, 531, 887
HpyCH4III	ACNGT	4 cut(s)	248, 379, 490, 498
HpyCH4IV	ACGT	2 cut(s)	261, 517
HpyCH4V	TGCA	6 cut(s)	96, 375, 712, 776, 919, 929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	406, 542, 548
HpyF3I	CTNAG	2 cut(s)	332, 483
HpySE526I	ACGT	2 cut(s)	261, 517
Hsp92II	CATG	3 cut(s)	365, 478, 691
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	471, 589
Kzo9I	GATC	2 cut(s)	471, 589
LguI	GCTCTTC	1 cut(s)	892
LmnI	GCTCC	3 cut(s)	286, 696, 814
Lsp1109I	GCAGC	2 cut(s)	409, 529
LweI	GCATC	2 cut(s)	323, 733
MaeI	CTAG	1 cut(s)	818
MaeII	ACGT	2 cut(s)	261, 517
MaeIII	GTNAC	4 cut(s)	248, 257, 274, 498
MalI	GATC	2 cut(s)	473, 591
MboI	GATC	2 cut(s)	471, 589
MboII	GAAGA	4 cut(s)	238, 359, 839, 909
MluCI	AATT	7 cut(s)	38, 49, 138, 466, 840, 866, 939
MmeI	TCCRAC	3 cut(s)	244, 342, 655
MnlI	CCTC	6 cut(s)	62, 103, 168, 556, 695, 781
Mph1103I	ATGCAT	2 cut(s)	714, 931
MroXI	GAANNNNTTC	1 cut(s)	712
MseI	TTAA	2 cut(s)	764, 846
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	2 cut(s)	29, 269
MspR9I	CCNGG	2 cut(s)	254, 270
Mva1269I	GAATGC	2 cut(s)	712, 714
MvaI	CCWGG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	406, 542, 548
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	2 cut(s)	471, 589
NlaIII	CATG	3 cut(s)	365, 478, 691
NlaIV	GGNNCC	2 cut(s)	86, 793
NmeAIII	GCCGAG	1 cut(s)	527
NmuCI	GTSAC	1 cut(s)	274
NsiI	ATGCAT	2 cut(s)	714, 931
NspV	TTCGAA	1 cut(s)	135
PagI	TCATGA	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	892
PctI	GAATGC	2 cut(s)	712, 714
PdmI	GAANNNNTTC	1 cut(s)	712
PfeI	GAWTC	6 cut(s)	11, 25, 326, 421, 433, 908
PkrI	GCNGC	2 cut(s)	399, 544
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	86, 793
PspPI	GGNCC	2 cut(s)	64, 266
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	3 cut(s)	86, 509, 533
RsaNI	GTAC	3 cut(s)	85, 508, 532
SapI	GCTCTTC	1 cut(s)	892
SaqAI	TTAA	2 cut(s)	764, 846
SatI	GCNGC	2 cut(s)	398, 543
Sau3AI	GATC	2 cut(s)	471, 589
Sau96I	GGNCC	2 cut(s)	64, 266
ScrFI	CCNGG	2 cut(s)	254, 270
SfaNI	GCATC	2 cut(s)	323, 733
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	2 cut(s)	64, 266
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	7 cut(s)	38, 49, 138, 466, 840, 866, 939
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	818
StyD4I	CCNGG	2 cut(s)	252, 268
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	4 cut(s)	248, 379, 490, 498
TaiI	ACGT	2 cut(s)	264, 520
TaqI	TCGA	4 cut(s)	106, 135, 585, 855
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	7 cut(s)	38, 49, 138, 466, 840, 866, 939
TatI	WGTACW	1 cut(s)	507
TfiI	GAWTC	6 cut(s)	11, 25, 326, 421, 433, 908
Tru1I	TTAA	2 cut(s)	764, 846
Tru9I	TTAA	2 cut(s)	764, 846
TscAI	CASTG	4 cut(s)	283, 382, 562, 706
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	397, 542
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	8 cut(s)	62, 306, 339, 407, 652, 840, 868, 876
TspRI	CASTG	4 cut(s)	283, 382, 562, 706
VpaK11BI	GGWCC	2 cut(s)	64, 266
XapI	RAATTY	5 cut(s)	38, 49, 466, 840, 866
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	712
XspI	CTAG	1 cut(s)	818
Zsp2I	ATGCAT	2 cut(s)	714, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.