Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

7305346 .. 7308922

Gene Structure 3577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGTTCAGAATCTCAATACCAGATTCCGGCAATAGAATTCGCAATGAATTCGCCAGAACTGGACCGAGGAACTGATGAGTGGTACCATCTGTGCAAGAAGGTTCGAGAGGCCTGTGAAAATTATGGTTGCTTCGAAATTGTGTATGATAGGATACCTCCGCAGTTAAAAGCCGAAACCTTCTGTGTGTCGAGGGAACTTTTCAGCCTTCCACTTGAGAAAAAGAAGAAGAACCTTAATCCAGAGCCTTACCAGGGTTACATTGGACCAAGTGTCCGCTATCCCTTGTATGAAGGCTTCGGCTTTGAGCAAGCATCCAACTATGAATCCCTTAGAAGCTTGACAGAAGAAATATTGCCTAATGGTCATGACCAATTTTGCACTGTCATTTCTATGATGAAGAAGCTGGATGAGCTGAAAAATATGATCAACTTGATGATTTTGGATGGCTATGGTTTGGAAGAGACATCAAATTCGTTCATGGTGTCTAAGACACTGCTAAAGTTGATGAAGTACATGGCACCTCCTTCAAGAGATTACTCAATGGGAACCCCGGTTCCCACCGACAAAGCATTTAGTACGATCCTTTGTGATGATCAAGTTTCAGGTCTTGAAGTTCAAACCAAGGATGAACAATGGGTCAAGTTGTCTATGTCTCCTCGCTCTTTTGTCTTTGTAGTTGGAGACTACCTCATGACATGGAGCAATGGCAGAATGCATGCCGTGAAGCATCGAGTGATGATGTGTGGCGAAAAAGAACGATATTCTCTAGCAGCATTTGCACTTCCATTAGAGGGTTCCATCACCAAGGCACAAAAGGAGCTAGTAGATGAAGACTACCCCCAAGTTGTTAAAGATCTTCACTATACTGACTTTAGCAAGTTCATCTCTTCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

300

Amino Acids

34.34

Weight (kDa)

5.17

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	17 - 90	5.5e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	170 - 261	2e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 520
AciI	CCGC	2 cut(s)	161, 277
AclWI	GGATC	1 cut(s)	577
AcsI	RAATTY	3 cut(s)	38, 49, 472
AcuI	CTGAAG	1 cut(s)	876
AfaI	GTAC	3 cut(s)	86, 515, 580
AfiI	CCNNNNNNNGG	3 cut(s)	28, 254, 794
AgsI	TTSAA	3 cut(s)	531, 614, 620
AhdI	GACNNNNNGTC	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	252
AloI	GAACNNNNNNTCC	4 cut(s)	540, 541, 572, 573
AluBI	AGCT	4 cut(s)	339, 406, 415, 823
AluI	AGCT	4 cut(s)	339, 406, 415, 823
Alw26I	GTCTC	3 cut(s)	458, 660, 678
AlwI	GGATC	1 cut(s)	577
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	773
ApoI	RAATTY	3 cut(s)	38, 49, 472
ArsI	GACNNNNNNTTYG	2 cut(s)	457, 489
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	64, 266
AsuC2I	CCSGG	1 cut(s)	554
AsuHPI	GGTGA	1 cut(s)	796
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	64, 266
BanI	GGYRCC	2 cut(s)	84, 520
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BbsI	GAAGAC	1 cut(s)	840
BbvI	GCAGC	1 cut(s)	785
BccI	CCATC	3 cut(s)	96, 440, 809
BceAI	ACGGC	1 cut(s)	707
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BciT130I	CCWGG	1 cut(s)	254
BciVI	GTATCC	1 cut(s)	147
BclI	TGATCA	2 cut(s)	426, 595
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	3 cut(s)	458, 660, 678
BfaI	CTAG	2 cut(s)	770, 824
BfuI	GTATCC	1 cut(s)	147
BglII	AGATCT	1 cut(s)	856
BisI	GCNGC	1 cut(s)	774
BlsI	GCNGC	1 cut(s)	775
Bme1390I	CCNGG	2 cut(s)	254, 554
Bme18I	GGWCC	2 cut(s)	64, 266
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	64, 266
BmiI	GGNNCC	5 cut(s)	86, 522, 550, 558, 799
BmrFI	CCNGG	2 cut(s)	254, 554
BmsI	GCATC	2 cut(s)	323, 739
BpiI	GAAGAC	1 cut(s)	840
BplI	GAGNNNNNCTC	2 cut(s)	675, 707
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	554
BsaJI	CCNNGG	5 cut(s)	67, 253, 552, 624, 807
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 254, 794
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	2 cut(s)	51, 712
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	5 cut(s)	67, 253, 552, 624, 807
BseGI	GGATG	4 cut(s)	314, 415, 451, 634
BseLI	CCNNNNNNNGG	3 cut(s)	28, 254, 794
BseMI	GCAATG	2 cut(s)	51, 712
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	648
BseXI	GCAGC	1 cut(s)	785
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	2 cut(s)	84, 520
BsiSI	CCGG	2 cut(s)	29, 554
BslI	CCNNNNNNNGG	3 cut(s)	28, 254, 794
BsmAI	GTCTC	3 cut(s)	458, 660, 678
BsmI	GAATGC	1 cut(s)	720
BsnI	GGCC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	426, 582, 595, 856
BspACI	CCGC	2 cut(s)	161, 277
BspANI	GGCC	1 cut(s)	113
BspHI	TCATGA	2 cut(s)	367, 693
BspLI	GGNNCC	5 cut(s)	86, 522, 550, 558, 799
BspPI	GGATC	1 cut(s)	577
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	2 cut(s)	84, 520
BsrDI	GCAATG	2 cut(s)	51, 712
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	5 cut(s)	67, 253, 552, 624, 807
BssMI	GATC	4 cut(s)	426, 582, 595, 856
BssT1I	CCWWGG	2 cut(s)	624, 807
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	2 cut(s)	456, 895
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	312, 720
BstDEI	CTNAG	2 cut(s)	332, 489
BstF5I	GGATG	4 cut(s)	314, 415, 451, 634
BstKTI	GATC	4 cut(s)	429, 585, 598, 859
BstMAI	GTCTC	3 cut(s)	458, 660, 678
BstMBI	GATC	4 cut(s)	426, 582, 595, 856
BstMWI	GCNNNNNNNGC	2 cut(s)	412, 779
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	722
BstSCI	CCNGG	2 cut(s)	252, 552
BstV1I	GCAGC	1 cut(s)	785
BstV2I	GAAGAC	1 cut(s)	840
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	4 cut(s)	314, 415, 451, 634
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	2 cut(s)	381, 494
Cac8I	GCNNGC	2 cut(s)	312, 720
CciI	TCATGA	2 cut(s)	367, 693
Cfr13I	GGNCC	2 cut(s)	64, 266
Csp6I	GTAC	3 cut(s)	85, 514, 579
CviAII	CATG	6 cut(s)	368, 481, 517, 694, 699, 719
CviQI	GTAC	3 cut(s)	85, 514, 579
DdeI	CTNAG	2 cut(s)	332, 489
DpnI	GATC	4 cut(s)	428, 584, 597, 858
DpnII	GATC	4 cut(s)	426, 582, 595, 856
DriI	GACNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	456, 895
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	2 cut(s)	456, 895
Eco130I	CCWWGG	2 cut(s)	624, 807
Eco147I	AGGCCT	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	64, 266
Eco57I	CTGAAG	1 cut(s)	876
EcoRI	GAATTC	2 cut(s)	38, 49
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	2 cut(s)	624, 807
EcoT22I	ATGCAT	1 cut(s)	720
ErhI	CCWWGG	2 cut(s)	624, 807
FaeI	CATG	6 cut(s)	371, 484, 520, 697, 702, 722
FatI	CATG	6 cut(s)	367, 480, 516, 693, 698, 718
FbaI	TGATCA	2 cut(s)	426, 595
Fnu4HI	GCNGC	1 cut(s)	774
FokI	GGATG	4 cut(s)	301, 422, 458, 641
Fsp4HI	GCNGC	1 cut(s)	774
FspBI	CTAG	2 cut(s)	770, 824
GluI	GCNGC	1 cut(s)	774
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	2 cut(s)	29, 554
Hin1II	CATG	6 cut(s)	371, 484, 520, 697, 702, 722
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	3 cut(s)	11, 25, 326
HpaII	CCGG	2 cut(s)	29, 554
HphI	GGTGA	1 cut(s)	796
Hpy188I	TCNGA	2 cut(s)	10, 895
Hpy188III	TCNNGA	6 cut(s)	107, 242, 368, 531, 611, 694
HpyAV	CCTTC	5 cut(s)	94, 190, 218, 287, 537
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4V	TGCA	4 cut(s)	96, 381, 718, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	412, 779
HpyF3I	CTNAG	2 cut(s)	332, 489
Hsp92II	CATG	6 cut(s)	371, 484, 520, 697, 702, 722
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	426, 595
Kzo9I	GATC	4 cut(s)	426, 582, 595, 856
LmnI	GCTCC	2 cut(s)	702, 820
Lsp1109I	GCAGC	1 cut(s)	785
LweI	GCATC	2 cut(s)	323, 739
MaeI	CTAG	2 cut(s)	770, 824
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	4 cut(s)	428, 584, 597, 858
MboI	GATC	4 cut(s)	426, 582, 595, 856
MboII	GAAGA	8 cut(s)	238, 241, 359, 412, 473, 845, 851, 882
MflI	RGATCY	1 cut(s)	856
MluCI	AATT	6 cut(s)	38, 49, 121, 138, 374, 472
MmeI	TCCRAC	2 cut(s)	342, 661
MnlI	CCTC	8 cut(s)	62, 103, 168, 186, 534, 669, 701, 787
Mph1103I	ATGCAT	1 cut(s)	720
MseI	TTAA	3 cut(s)	167, 237, 852
MslI	CAYNNNNRTG	1 cut(s)	392
MspI	CCGG	2 cut(s)	29, 554
MspR9I	CCNGG	2 cut(s)	254, 554
Mva1269I	GAATGC	1 cut(s)	720
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	412, 779
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	4 cut(s)	426, 582, 595, 856
NlaIII	CATG	6 cut(s)	371, 484, 520, 697, 702, 722
NlaIV	GGNNCC	5 cut(s)	86, 522, 550, 558, 799
NsiI	ATGCAT	1 cut(s)	720
NspI	RCATGY	1 cut(s)	722
NspV	TTCGAA	1 cut(s)	135
PaeI	GCATGC	1 cut(s)	722
PagI	TCATGA	2 cut(s)	367, 693
PceI	AGGCCT	1 cut(s)	113
PctI	GAATGC	1 cut(s)	720
PfeI	GAWTC	3 cut(s)	11, 25, 326
PkrI	GCNGC	1 cut(s)	775
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	5 cut(s)	86, 522, 550, 558, 799
PspPI	GGNCC	2 cut(s)	64, 266
PsuI	RGATCY	1 cut(s)	856
RsaI	GTAC	3 cut(s)	86, 515, 580
RsaNI	GTAC	3 cut(s)	85, 514, 579
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	3 cut(s)	167, 237, 852
SatI	GCNGC	1 cut(s)	774
Sau3AI	GATC	4 cut(s)	426, 582, 595, 856
Sau96I	GGNCC	2 cut(s)	64, 266
ScrFI	CCNGG	2 cut(s)	254, 554
SfaNI	GCATC	2 cut(s)	323, 739
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	2 cut(s)	64, 266
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	722
Sse9I	AATT	6 cut(s)	38, 49, 121, 138, 374, 472
SseBI	AGGCCT	1 cut(s)	113
SsiI	CCGC	2 cut(s)	161, 277
SspI	AATATT	1 cut(s)	354
SspMI	CTAG	2 cut(s)	770, 824
StuI	AGGCCT	1 cut(s)	113
StyD4I	CCNGG	2 cut(s)	252, 552
StyI	CCWWGG	2 cut(s)	624, 807
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	4 cut(s)	106, 135, 191, 733
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	6 cut(s)	38, 49, 121, 138, 374, 472
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	3 cut(s)	11, 25, 326
Tru1I	TTAA	3 cut(s)	167, 237, 852
Tru9I	TTAA	3 cut(s)	167, 237, 852
TscAI	CASTG	2 cut(s)	388, 501
TseI	GCWGC	1 cut(s)	773
TspDTI	ATGAA	9 cut(s)	62, 306, 339, 413, 469, 524, 645, 846, 874
TspRI	CASTG	2 cut(s)	388, 501
VpaK11BI	GGWCC	2 cut(s)	64, 266
XapI	RAATTY	3 cut(s)	38, 49, 472
XceI	RCATGY	1 cut(s)	722
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XspI	CTAG	2 cut(s)	770, 824
Zsp2I	ATGCAT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.