Rorug05G0467500

Gibberellin 3-beta-dioxygenase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
64385610 .. 64387276
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0467500.1

Sequence Viewer

Length: 366 bp
ATGGTCAAAGAGGGTAGTGTTAAAGATCGAATTTTCCACTCTTTGATGGGAGATGATGGTCATGGGTATTGTCGTACTTTTGGAGCTGGTGTGCCTCGTAATCTAGTATATCCAAAGGAATCAAATATATCTCAAAGCACAGATGATCTCGTACAAAAAATCACTGAACAAGTTGCTGATGCAACTAGCAGGCATGAAATTTTGAGGGAGTCTATAGGAGATGAAATAACTCCGAATGCAAATAGTGACCAGCCATTGTTGGAGCAGAATTCTCCAGTAACATCCCCTTCACAAAATGGATCTGAAAGGGTTCTCATGGCAAAAAGAGCAAAGCAAATGAAAGCAAGTGCAAAGCTCACAAAATGA

Protein Analysis

121

Amino Acids

13.28

Weight (kDa)

6.83

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000436)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 3 cut(s) 30, 198, 268
AfaI GTAC 2 cut(s) 76, 153
AluBI AGCT 2 cut(s) 86, 355
AluI AGCT 2 cut(s) 86, 355
AlwI GGATC 1 cut(s) 307
ApoI RAATTY 3 cut(s) 30, 198, 268
Asp700I GAANNNNTTC 1 cut(s) 309
BccI CCATC 2 cut(s) 40, 50
BfaI CTAG 2 cut(s) 104, 186
BfmI CTRYAG 1 cut(s) 213
BmsI GCATC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bse1I ACTGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 275
BsmI GAATGC 1 cut(s) 241
Bsp143I GATC 3 cut(s) 25, 145, 299
BspPI GGATC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 275
BssMI GATC 3 cut(s) 25, 145, 299
BstC8I GCNNGC 1 cut(s) 191
BstF5I GGATG 1 cut(s) 281
BstKTI GATC 3 cut(s) 28, 148, 302
BstMBI GATC 3 cut(s) 25, 145, 299
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BtsCI GGATG 1 cut(s) 281
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 75, 152
CviAII CATG 3 cut(s) 62, 194, 316
CviJI RGCY 3 cut(s) 86, 253, 355
CviKI_1 RGCY 3 cut(s) 86, 253, 355
CviQI GTAC 2 cut(s) 75, 152
DpnI GATC 3 cut(s) 27, 147, 301
DpnII GATC 3 cut(s) 25, 145, 299
EcoRI GAATTC 1 cut(s) 268
FaeI CATG 3 cut(s) 65, 197, 319
FaiI YATR 6 cut(s) 63, 109, 128, 195, 215, 317
FatI CATG 3 cut(s) 61, 193, 315
FokI GGATG 1 cut(s) 268
FspBI CTAG 2 cut(s) 104, 186
GsuI CTGGAG 1 cut(s) 258
Hin1II CATG 3 cut(s) 65, 197, 319
HinfI GANTC 2 cut(s) 119, 209
Hpy188I TCNGA 2 cut(s) 234, 304
HpyAV CCTTC 1 cut(s) 297
HpyCH4V TGCA 3 cut(s) 182, 239, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
Hsp92II CATG 3 cut(s) 65, 197, 319
Kzo9I GATC 3 cut(s) 25, 145, 299
LmnI GCTCC 2 cut(s) 83, 262
LpnPI CCDG 4 cut(s) 72, 175, 263, 288
LweI GCATC 1 cut(s) 169
MaeI CTAG 2 cut(s) 104, 186
MaeIII GTNAC 2 cut(s) 245, 277
MalI GATC 3 cut(s) 27, 147, 301
MboI GATC 3 cut(s) 25, 145, 299
MflI RGATCY 1 cut(s) 299
MluCI AATT 3 cut(s) 30, 198, 268
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 3 cut(s) 4, 105, 198
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 326
NdeII GATC 3 cut(s) 25, 145, 299
NlaIII CATG 3 cut(s) 65, 197, 319
NmuCI GTSAC 1 cut(s) 245
PctI GAATGC 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 119
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PsuI RGATCY 1 cut(s) 299
RsaI GTAC 2 cut(s) 76, 153
RsaNI GTAC 2 cut(s) 75, 152
SaqAI TTAA 1 cut(s) 21
Sau3AI GATC 3 cut(s) 25, 145, 299
SchI GAGTC 1 cut(s) 218
SetI ASST 2 cut(s) 88, 357
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 213
Sse9I AATT 3 cut(s) 30, 198, 268
SspMI CTAG 2 cut(s) 104, 186
TaqI TCGA 1 cut(s) 28
TasI AATT 3 cut(s) 30, 198, 268
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 3 cut(s) 210, 237, 353
TspRI CASTG 1 cut(s) 169
XapI RAATTY 3 cut(s) 30, 198, 268
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 2 cut(s) 104, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.