Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

68116477 .. 68128661

Gene Structure 12185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGTTCAGATTTTCAAAACCAAATTTCGAGCATAGAGTTCTCAATCAATTCCTTAGAAATAGACCAAGGAACTGACAAGTGGTACCAATTGTGCAAGAGGGTCGAGAGCCATGTGAATCTTTCGGTTCAGATCAAGAAGAAGAACATGAATCCAAAGCCTTACCATGGTTACTTTGGGCAGTATGCAATCTTCTTTCGTTTTGTTTTGATGATGATGTCATTGTGTTCCCACAACAACATTGTAGTTACTATGGTGAAGAAGCTGGATGAGCTGAAGGAAATGATCGAAATGATGATTCTTGATAGTTATGGGTTGGGAGAGAAACTGAATTCGATCATTGCTTGTAAGACGTTGCTACGCGTGATGAAATACAATGCACCTCCATCGGGACAGTACGCAAATGGGCACTATGGGCTCACTCCTCATGTAACGTCCCTCAGCACAATCCTTTGTGATTATCAAGTTTTAGGGCTTGAATTTGAAACCAAAGATGGGCAATGGGTCAAGTTGTCTCTATCTCCCACCTCCTTCCTCTTTATTGTTGGAGATCCTCTTATGGCATGGAGTAATGGAAGAATGCATCGCCTTAAGCACAGGGTGATGATTTCAGGAGAAAAAGATCGATATTGTTTGGGAGCATTTGGAAGTCCATTAGAGGGTACCATCATCAAGGCAGCAAAGGAGCTAGTGGATGATAAACATCCCCAAATTCTCAAAGACTTTGACTGTAAGGACTTCAGTAAGTTCACCTTCACACAGGAAGGAAGCACCATAGACTCGGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

263

Amino Acids

29.99

Weight (kDa)

7.07

Isoelectric Point (pI)

30.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	123 - 215	1.2e-10	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	84, 662
AccB1I	GGYRCC	2 cut(s)	84, 662
AccII	CGCG	1 cut(s)	363
AclWI	GGATC	1 cut(s)	545
AcsI	RAATTY	4 cut(s)	24, 331, 479, 711
AcuI	CTGAAG	2 cut(s)	296, 724
AdeI	CACNNNGTG	1 cut(s)	601
AfaI	GTAC	3 cut(s)	86, 398, 664
AfiI	CCNNNNNNNGG	4 cut(s)	167, 389, 495, 659
AflII	CTTAAG	1 cut(s)	590
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	17, 479, 485
AluBI	AGCT	3 cut(s)	265, 274, 688
AluI	AGCT	3 cut(s)	265, 274, 688
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	1 cut(s)	545
ApeKI	GCWGC	1 cut(s)	677
ApoI	RAATTY	4 cut(s)	24, 331, 479, 711
Asp718I	GGTACC	2 cut(s)	84, 662
AsuHPI	GGTGA	3 cut(s)	268, 613, 742
BaeGI	GKGCMC	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	84, 662
BanII	GRGCYC	1 cut(s)	420
BarI	GAAGNNNNNNTAC	2 cut(s)	176, 208
BbvCI	CCTCAGC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	689
BccI	CCATC	3 cut(s)	394, 488, 674
BcgI	CGANNNNNNTGC	4 cut(s)	85, 119, 369, 403
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	1 cut(s)	689
BfrI	CTTAAG	1 cut(s)	590
BisI	GCNGC	1 cut(s)	678
BlsI	GCNGC	1 cut(s)	679
BmiI	GGNNCC	2 cut(s)	86, 664
BmsI	GCATC	1 cut(s)	592
Bpu10I	CCTNAGC	1 cut(s)	440
Bsa29I	ATCGAT	1 cut(s)	625
BsaBI	GATNNNNATC	1 cut(s)	702
BsaJI	CCNNGG	2 cut(s)	67, 166
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 389, 495, 659
Bse3DI	GCAATG	2 cut(s)	339, 506
Bse8I	GATNNNNATC	1 cut(s)	702
BseCI	ATCGAT	1 cut(s)	625
BseDI	CCNNGG	2 cut(s)	67, 166
BseGI	GGATG	3 cut(s)	274, 700, 703
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	4 cut(s)	167, 389, 495, 659
BseMI	GCAATG	2 cut(s)	339, 506
BseMII	CTCAG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	414
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	689
Bsh1236I	CGCG	1 cut(s)	363
BshNI	GGYRCC	2 cut(s)	84, 662
BshVI	ATCGAT	1 cut(s)	625
BslFI	GGGAC	2 cut(s)	405, 421
BslI	CCNNNNNNNGG	4 cut(s)	167, 389, 495, 659
BsmAI	GTCTC	1 cut(s)	519
BsmFI	GGGAC	2 cut(s)	405, 421
BsmI	GAATGC	1 cut(s)	585
Bsp1286I	GDGCHC	2 cut(s)	411, 420
Bsp143I	GATC	5 cut(s)	132, 285, 336, 550, 622
Bsp19I	CCATGG	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	453
BspDI	ATCGAT	1 cut(s)	625
BspFNI	CGCG	1 cut(s)	363
BspLI	GGNNCC	2 cut(s)	86, 664
BspPI	GGATC	1 cut(s)	545
BspT107I	GGYRCC	2 cut(s)	84, 662
BspTI	CTTAAG	1 cut(s)	590
BsrDI	GCAATG	2 cut(s)	339, 506
BssECI	CCNNGG	2 cut(s)	67, 166
BssMI	GATC	5 cut(s)	132, 285, 336, 550, 622
BssT1I	CCWWGG	2 cut(s)	67, 166
Bst4CI	ACNGT	2 cut(s)	396, 731
BstAFI	CTTAAG	1 cut(s)	590
BstDEI	CTNAG	2 cut(s)	55, 440
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	3 cut(s)	274, 700, 703
BstFNI	CGCG	1 cut(s)	363
BstKTI	GATC	5 cut(s)	135, 288, 339, 553, 625
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	5 cut(s)	132, 285, 336, 550, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 415
BstSLI	GKGCMC	1 cut(s)	411
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	689
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
Bsu15I	ATCGAT	1 cut(s)	625
BsuTUI	ATCGAT	1 cut(s)	625
BtgI	CCRYGG	1 cut(s)	166
BtgZI	GCGATG	1 cut(s)	569
BtsCI	GGATG	3 cut(s)	274, 700, 703
ClaI	ATCGAT	1 cut(s)	625
Csp6I	GTAC	3 cut(s)	85, 397, 663
CviAII	CATG	5 cut(s)	113, 148, 167, 428, 564
CviJI	RGCY	7 cut(s)	111, 160, 265, 274, 418, 475, 688
CviKI_1	RGCY	7 cut(s)	111, 160, 265, 274, 418, 475, 688
CviQI	GTAC	3 cut(s)	85, 397, 663
DdeI	CTNAG	2 cut(s)	55, 440
DpnI	GATC	5 cut(s)	134, 287, 338, 552, 624
DpnII	GATC	5 cut(s)	132, 285, 336, 550, 622
DraIII	CACNNNGTG	1 cut(s)	601
Eco130I	CCWWGG	2 cut(s)	67, 166
Eco24I	GRGCYC	1 cut(s)	420
Eco57I	CTGAAG	2 cut(s)	296, 724
EcoRI	GAATTC	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	67, 166
EcoT22I	ATGCAT	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	2 cut(s)	67, 166
FaeI	CATG	5 cut(s)	116, 151, 170, 431, 567
FalI	AAGNNNNNCTT	2 cut(s)	737, 769
FaqI	GGGAC	2 cut(s)	405, 421
FatI	CATG	5 cut(s)	112, 147, 166, 427, 563
Fnu4HI	GCNGC	1 cut(s)	678
FokI	GGATG	3 cut(s)	281, 690, 707
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	678
FspBI	CTAG	1 cut(s)	689
GluI	GCNGC	1 cut(s)	678
Hin1II	CATG	5 cut(s)	116, 151, 170, 431, 567
HinfI	GANTC	4 cut(s)	118, 151, 298, 779
HphI	GGTGA	3 cut(s)	268, 613, 742
Hpy166II	GTNNAC	1 cut(s)	750
Hpy188I	TCNGA	3 cut(s)	10, 132, 784
Hpy188III	TCNNGA	5 cut(s)	106, 136, 302, 390, 612
Hpy8I	GTNNAC	1 cut(s)	750
HpyAV	CCTTC	4 cut(s)	271, 541, 758, 763
HpyCH4III	ACNGT	2 cut(s)	396, 731
HpyCH4IV	ACGT	2 cut(s)	353, 434
HpyCH4V	TGCA	4 cut(s)	96, 188, 380, 583
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 415
HpyF3I	CTNAG	2 cut(s)	55, 440
HpySE526I	ACGT	2 cut(s)	353, 434
Hsp92II	CATG	5 cut(s)	116, 151, 170, 431, 567
KpnI	GGTACC	2 cut(s)	88, 666
Kzo9I	GATC	5 cut(s)	132, 285, 336, 550, 622
LmnI	GCTCC	2 cut(s)	638, 685
LpnPI	CCDG	4 cut(s)	251, 583, 597, 746
Lsp1109I	GCAGC	1 cut(s)	689
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	1 cut(s)	689
MaeII	ACGT	2 cut(s)	353, 434
MaeIII	GTNAC	3 cut(s)	170, 247, 430
MalI	GATC	5 cut(s)	134, 287, 338, 552, 624
MboI	GATC	5 cut(s)	132, 285, 336, 550, 622
MboII	GAAGA	5 cut(s)	151, 154, 184, 271, 588
MfeI	CAATTG	1 cut(s)	89
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	2 cut(s)	411, 420
MluCI	AATT	6 cut(s)	24, 49, 89, 331, 479, 711
MluI	ACGCGT	1 cut(s)	361
MlyI	GAGTC	1 cut(s)	773
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	8 cut(s)	93, 393, 435, 449, 538, 545, 564, 652
Mph1103I	ATGCAT	1 cut(s)	585
MseI	TTAA	1 cut(s)	591
MspCI	CTTAAG	1 cut(s)	590
MunI	CAATTG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	585
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	271, 415
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	5 cut(s)	132, 285, 336, 550, 622
NlaIII	CATG	5 cut(s)	116, 151, 170, 431, 567
NlaIV	GGNNCC	2 cut(s)	86, 664
NsiI	ATGCAT	1 cut(s)	585
PctI	GAATGC	1 cut(s)	585
PfeI	GAWTC	3 cut(s)	118, 151, 298
PkrI	GCNGC	1 cut(s)	679
PleI	GAGTC	1 cut(s)	773
PpsI	GAGTC	1 cut(s)	773
PspN4I	GGNNCC	2 cut(s)	86, 664
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	3 cut(s)	86, 398, 664
RsaNI	GTAC	3 cut(s)	85, 397, 663
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	1 cut(s)	678
Sau3AI	GATC	5 cut(s)	132, 285, 336, 550, 622
SchI	GAGTC	1 cut(s)	773
SduI	GDGCHC	2 cut(s)	411, 420
SetI	ASST	8 cut(s)	267, 276, 356, 385, 437, 530, 690, 755
SfaNI	GCATC	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	6 cut(s)	24, 49, 89, 331, 479, 711
SspMI	CTAG	1 cut(s)	689
StyI	CCWWGG	2 cut(s)	67, 166
TaaI	ACNGT	2 cut(s)	396, 731
TaiI	ACGT	2 cut(s)	356, 437
TaqI	TCGA	5 cut(s)	29, 105, 288, 335, 625
TasI	AATT	6 cut(s)	24, 49, 89, 331, 479, 711
TfiI	GAWTC	3 cut(s)	118, 151, 298
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TseI	GCWGC	1 cut(s)	677
TspDTI	ATGAA	2 cut(s)	164, 383
Vha464I	CTTAAG	1 cut(s)	590
XapI	RAATTY	4 cut(s)	24, 331, 479, 711
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XspI	CTAG	1 cut(s)	689
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.