Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

33912036 .. 33914389

Gene Structure 2354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56872

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGTTCCGATTCTCATTACCAGATTCCGGCCATTGATTTCTCAATCAATTCTACGGAACTGGATCGAGGAACTGATAAGTGGTACAATTTGTGCAAGAGGGTTAGAGAGGCTTGTGAAAATTATGGTTGCTTTGAAATAGTGTATGATAAGATACCCCTGCAGTTAAAAGCAGATACCTTCTCTATGATAAGGCAACTTTTTAACCTTCCAGTGGAGACAAAAGAGAAGAATGTTAATCCAAAGCCTTTCCATGGTTATTATGGACAGTATCCCACTACTCCCTTCTATGAGAGCTTTGGCATTGAAGATTCCTCCAACTATGAGTCCTTTAAAAGCTTCACTGAGTTGATGTGGCCAGATGGTCATGAGCAGTTTTGCAACACTGTAGTTACCATGGTGAAGAAGATGGATGAGCTGAAGGAAATGATCGAAATGATGATCCTTGATAGTTATGGGTTGGGAGAGAAACTGAATTCGATCATTGCTTGTAATAAGACGTTGCTACGTGTGATGAAATACGATGCACCTCCATCGGGACAGTACGCAAATGGGCACTATGGGCTCACTCCTCACACTGACAAACTAGTGAGCACAATCCTTTGTGATGATCAAGTTTCAGGGCTTGAATTTGAAACCAAGGATGGCCAATGGGTCAAGTTGTCTCTATCTCCCACCTCCTACCTCTTTATTGTTGGAGATCCTCTTATGGCATGGAGTAATGGAAGAATGCATCGCCTTAAGCACAGGGTGATGATTTCAGGAGGAAAAGAGCGATATTCTTTGGGAGCATTTGGAAGTCCATTAGAGGGTACCATCATCAAGGCAGCAAAGGAGCTAGTGGATGATGAACATCCCCGAATTCTGAAAGACTTTGACTATAAGGACTTCAGTAAGTTCACCTTCACACAGGAAGGAAGCGCCATAGACTCGGAAATGCAAGTTTTCGCATTTGCTGGAATTAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

323

Amino Acids

36.84

Weight (kDa)

5.27

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 90	2.2e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	171 - 265	8.8e-17	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	812
AccB1I	GGYRCC	1 cut(s)	812
AclWI	GGATC	3 cut(s)	72, 436, 695
AcoI	YGGCCR	3 cut(s)	30, 356, 646
AcsI	RAATTY	3 cut(s)	475, 629, 861
AcuI	CTGAAG	2 cut(s)	440, 874
AdeI	CACNNNGTG	1 cut(s)	751
AfaI	GTAC	3 cut(s)	86, 545, 814
AfiI	CCNNNNNNNGG	5 cut(s)	28, 214, 254, 536, 809
AflII	CTTAAG	1 cut(s)	740
AflIII	ACRYGT	1 cut(s)	508
AgsI	TTSAA	4 cut(s)	137, 308, 629, 635
AhlI	ACTAGT	1 cut(s)	586
AluBI	AGCT	4 cut(s)	297, 339, 418, 838
AluI	AGCT	4 cut(s)	297, 339, 418, 838
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	2 cut(s)	212, 669
AlwI	GGATC	3 cut(s)	72, 436, 695
AoxI	GGCC	3 cut(s)	30, 356, 646
ApeKI	GCWGC	1 cut(s)	827
ApoI	RAATTY	3 cut(s)	475, 629, 861
Asp718I	GGTACC	1 cut(s)	812
AspLEI	GCGC	1 cut(s)	923
AsuHPI	GGTGA	3 cut(s)	412, 763, 892
BaeGI	GKGCMC	1 cut(s)	558
BalI	TGGCCA	2 cut(s)	358, 648
BanI	GGYRCC	1 cut(s)	812
BanII	GRGCYC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	1 cut(s)	839
BccI	CCATC	5 cut(s)	356, 403, 541, 638, 824
BcgI	CGANNNNNNTGC	2 cut(s)	516, 550
BciVI	GTATCC	1 cut(s)	282
BclI	TGATCA	1 cut(s)	610
BcoDI	GTCTC	2 cut(s)	212, 669
BcuI	ACTAGT	1 cut(s)	586
BfaI	CTAG	2 cut(s)	587, 839
BfmI	CTRYAG	2 cut(s)	161, 387
BfoI	RGCGCY	1 cut(s)	924
BfrI	CTTAAG	1 cut(s)	740
BfuI	GTATCC	1 cut(s)	282
BisI	GCNGC	1 cut(s)	828
BlsI	GCNGC	1 cut(s)	829
BmiI	GGNNCC	2 cut(s)	7, 814
BmsI	GCATC	2 cut(s)	514, 742
BsaAI	YACGTR	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	852
BsaJI	CCNNGG	3 cut(s)	253, 396, 639
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 214, 254, 536, 809
Bse1I	ACTGG	2 cut(s)	66, 212
Bse3DI	GCAATG	1 cut(s)	483
Bse8I	GATNNNNATC	1 cut(s)	852
BseDI	CCNNGG	3 cut(s)	253, 396, 639
BseGI	GGATG	4 cut(s)	418, 649, 850, 853
BseJI	GATNNNNATC	1 cut(s)	852
BseLI	CCNNNNNNNGG	5 cut(s)	28, 214, 254, 536, 809
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	66, 212
BseRI	GAGGAG	1 cut(s)	561
BseSI	GKGCMC	1 cut(s)	558
BseXI	GCAGC	1 cut(s)	839
BshFI	GGCC	3 cut(s)	32, 358, 648
BshNI	GGYRCC	1 cut(s)	812
BsiHKAI	GWGCWC	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	552
BslI	CCNNNNNNNGG	5 cut(s)	28, 214, 254, 536, 809
BsmAI	GTCTC	2 cut(s)	212, 669
BsmFI	GGGAC	1 cut(s)	552
BsmI	GAATGC	1 cut(s)	735
BsnI	GGCC	3 cut(s)	32, 358, 648
Bsp1286I	GDGCHC	3 cut(s)	558, 567, 596
Bsp143I	GATC	6 cut(s)	64, 429, 441, 480, 610, 700
Bsp19I	CCATGG	2 cut(s)	253, 396
BspANI	GGCC	3 cut(s)	32, 358, 648
BspCNI	CTCAG	1 cut(s)	337
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	7, 814
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	3 cut(s)	72, 436, 695
BspT107I	GGYRCC	1 cut(s)	812
BspTI	CTTAAG	1 cut(s)	740
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	66, 212
BssECI	CCNNGG	3 cut(s)	253, 396, 639
BssMI	GATC	6 cut(s)	64, 429, 441, 480, 610, 700
BssT1I	CCWWGG	3 cut(s)	253, 396, 639
Bst4CI	ACNGT	3 cut(s)	270, 388, 543
BstAFI	CTTAAG	1 cut(s)	740
BstBAI	YACGTR	1 cut(s)	509
BstDEI	CTNAG	1 cut(s)	345
BstDSI	CCRYGG	2 cut(s)	253, 396
BstF5I	GGATG	4 cut(s)	418, 649, 850, 853
BstH2I	RGCGCY	1 cut(s)	924
BstHHI	GCGC	1 cut(s)	923
BstKTI	GATC	6 cut(s)	67, 432, 444, 483, 613, 703
BstMAI	GTCTC	2 cut(s)	212, 669
BstMBI	GATC	6 cut(s)	64, 429, 441, 480, 610, 700
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstSFI	CTRYAG	2 cut(s)	161, 387
BstSLI	GKGCMC	1 cut(s)	558
BstV1I	GCAGC	1 cut(s)	839
BstX2I	RGATCY	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	700
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	3 cut(s)	32, 358, 648
BtgI	CCRYGG	2 cut(s)	253, 396
BtgZI	GCGATG	1 cut(s)	719
BtsCI	GGATG	4 cut(s)	418, 649, 850, 853
BtsIMutI	CAGTG	4 cut(s)	219, 342, 384, 576
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	923
Csp6I	GTAC	3 cut(s)	85, 544, 813
CviAII	CATG	4 cut(s)	254, 368, 397, 714
CviQI	GTAC	3 cut(s)	85, 544, 813
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	6 cut(s)	66, 431, 443, 482, 612, 702
DpnII	GATC	6 cut(s)	64, 429, 441, 480, 610, 700
DraI	TTTAAA	1 cut(s)	334
DraIII	CACNNNGTG	1 cut(s)	751
EaeI	YGGCCR	3 cut(s)	30, 356, 646
Eco130I	CCWWGG	3 cut(s)	253, 396, 639
Eco24I	GRGCYC	1 cut(s)	567
Eco57I	CTGAAG	2 cut(s)	440, 874
EcoRI	GAATTC	2 cut(s)	475, 861
EcoT14I	CCWWGG	3 cut(s)	253, 396, 639
EcoT22I	ATGCAT	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	3 cut(s)	253, 396, 639
FaeI	CATG	4 cut(s)	257, 371, 400, 717
FalI	AAGNNNNNCTT	2 cut(s)	887, 919
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	4 cut(s)	253, 367, 396, 713
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	1 cut(s)	828
FokI	GGATG	4 cut(s)	425, 656, 840, 857
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	1 cut(s)	828
FspBI	CTAG	2 cut(s)	587, 839
GlaI	GCGC	1 cut(s)	922
GluI	GCNGC	1 cut(s)	828
HaeII	RGCGCY	1 cut(s)	924
HaeIII	GGCC	3 cut(s)	32, 358, 648
HapII	CCGG	1 cut(s)	29
HhaI	GCGC	1 cut(s)	923
Hin1II	CATG	4 cut(s)	257, 371, 400, 717
Hin6I	GCGC	1 cut(s)	921
HinP1I	GCGC	1 cut(s)	921
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	5 cut(s)	11, 25, 311, 326, 929
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	3 cut(s)	412, 763, 892
Hpy166II	GTNNAC	1 cut(s)	900
Hpy188I	TCNGA	3 cut(s)	10, 867, 934
Hpy188III	TCNNGA	3 cut(s)	368, 537, 762
Hpy8I	GTNNAC	1 cut(s)	900
HpyAV	CCTTC	6 cut(s)	190, 218, 295, 415, 908, 913
HpyCH4III	ACNGT	3 cut(s)	270, 388, 543
HpyCH4IV	ACGT	2 cut(s)	500, 508
HpyCH4V	TGCA	6 cut(s)	96, 163, 381, 527, 733, 940
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	2 cut(s)	500, 508
Hsp92II	CATG	4 cut(s)	257, 371, 400, 717
HspAI	GCGC	1 cut(s)	921
KpnI	GGTACC	1 cut(s)	816
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	6 cut(s)	64, 429, 441, 480, 610, 700
LmnI	GCTCC	2 cut(s)	788, 835
Lsp1109I	GCAGC	1 cut(s)	839
LweI	GCATC	2 cut(s)	514, 742
MaeI	CTAG	2 cut(s)	587, 839
MaeII	ACGT	2 cut(s)	500, 508
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	6 cut(s)	66, 431, 443, 482, 612, 702
MboI	GATC	6 cut(s)	64, 429, 441, 480, 610, 700
MboII	GAAGA	5 cut(s)	241, 320, 415, 418, 738
MflI	RGATCY	1 cut(s)	700
MhlI	GDGCHC	3 cut(s)	558, 567, 596
MlsI	TGGCCA	2 cut(s)	358, 648
MluCI	AATT	7 cut(s)	49, 88, 121, 475, 629, 861, 960
MluNI	TGGCCA	2 cut(s)	358, 648
MlyI	GAGTC	2 cut(s)	335, 923
MmeI	TCCRAC	2 cut(s)	342, 676
Mox20I	TGGCCA	2 cut(s)	358, 648
Mph1103I	ATGCAT	1 cut(s)	735
MscI	TGGCCA	2 cut(s)	358, 648
MseI	TTAA	5 cut(s)	167, 204, 237, 333, 741
Msp20I	TGGCCA	2 cut(s)	358, 648
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	735
MwoI	GCNNNNNNNGC	1 cut(s)	562
NcoI	CCATGG	2 cut(s)	253, 396
NdeII	GATC	6 cut(s)	64, 429, 441, 480, 610, 700
NlaIII	CATG	4 cut(s)	257, 371, 400, 717
NlaIV	GGNNCC	2 cut(s)	7, 814
NsiI	ATGCAT	1 cut(s)	735
PagI	TCATGA	1 cut(s)	367
PctI	GAATGC	1 cut(s)	735
PfeI	GAWTC	3 cut(s)	11, 25, 311
PkrI	GCNGC	1 cut(s)	829
PleI	GAGTC	2 cut(s)	334, 923
PpsI	GAGTC	2 cut(s)	334, 923
Ppu21I	YACGTR	1 cut(s)	509
PspN4I	GGNNCC	2 cut(s)	7, 814
PstI	CTGCAG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	700
RsaI	GTAC	3 cut(s)	86, 545, 814
RsaNI	GTAC	3 cut(s)	85, 544, 813
SaqAI	TTAA	5 cut(s)	167, 204, 237, 333, 741
SatI	GCNGC	1 cut(s)	828
Sau3AI	GATC	6 cut(s)	64, 429, 441, 480, 610, 700
SchI	GAGTC	2 cut(s)	335, 923
SduI	GDGCHC	3 cut(s)	558, 567, 596
SfaNI	GCATC	2 cut(s)	514, 742
SfcI	CTRYAG	2 cut(s)	161, 387
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SpeI	ACTAGT	1 cut(s)	586
Sse9I	AATT	7 cut(s)	49, 88, 121, 475, 629, 861, 960
SspMI	CTAG	2 cut(s)	587, 839
StyI	CCWWGG	3 cut(s)	253, 396, 639
TaaI	ACNGT	3 cut(s)	270, 388, 543
TaiI	ACGT	2 cut(s)	503, 511
TaqI	TCGA	3 cut(s)	67, 432, 479
TasI	AATT	7 cut(s)	49, 88, 121, 475, 629, 861, 960
TfiI	GAWTC	3 cut(s)	11, 25, 311
Tru1I	TTAA	5 cut(s)	167, 204, 237, 333, 741
Tru9I	TTAA	5 cut(s)	167, 204, 237, 333, 741
TscAI	CASTG	4 cut(s)	219, 349, 391, 583
TseI	GCWGC	1 cut(s)	827
TspDTI	ATGAA	2 cut(s)	530, 864
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	4 cut(s)	219, 349, 391, 583
Vha464I	CTTAAG	1 cut(s)	740
XapI	RAATTY	3 cut(s)	475, 629, 861
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XspI	CTAG	2 cut(s)	587, 839
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.