Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

54544497 .. 54546367

Gene Structure 1871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0400600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTTGGGGTGTATGAGCATTAACCCTTCAAAAATGGGCGGGTTAGTGCGGGCTTTAACCGTGCGGGTTTCGGGCGGGTTTGCGGCATTGCTGGCATATGCCTCATGTTTACTGGGAACTCGTTTTTTCTGTGGGCTAAAAGGAAAGGAAGGGGAGCAAAGGAAAGGGAAAGGTCGGAGCGTCTGGCGTCGAAGGAAACTGACAAAGAAGGATGACATGTTGCGATACAAAATGGAGAGAGTGCCTTCCCTGGAGGAACAAGTTCGGAAGGTAAAGGATGAAGGACAGCTCTTGGGAATGGACATCAAGAGACTACTACTCTCAGAGGACAACCGGTTTGATTTTGTGAATGAAATTGCGGCCGAGGCCAACGAGTATGTTGAGAACAACCGAGATGAGTATGGCGGTAAGAAGAAAGCCATCCTTCAGGTGCTAAATAACCGTGTGAATGATGCTGGGTTTTATAGACCTGAGGCATATGAAGAATCTGACCCCTTCAAACCAGGGCCGTCGTGGTTGAAAGAATTTTATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

178

Amino Acids

20.34

Weight (kDa)

9.4

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	39, 49, 64, 75, 83, 359, 405
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	410
AcyI	GRCGYC	1 cut(s)	187
AflIII	ACRYGT	1 cut(s)	216
AgeI	ACCGGT	1 cut(s)	333
AgsI	TTSAA	3 cut(s)	30, 499, 520
AjnI	CCWGG	2 cut(s)	249, 502
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	304
AoxI	GGCC	3 cut(s)	360, 366, 506
ApoI	RAATTY	1 cut(s)	524
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AsiGI	ACCGGT	1 cut(s)	333
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	506
AxyI	CCTNAGG	1 cut(s)	471
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	1 cut(s)	493
BciT130I	CCWGG	2 cut(s)	251, 504
BcoDI	GTCTC	1 cut(s)	304
BisI	GCNGC	2 cut(s)	84, 360
BlsI	GCNGC	2 cut(s)	85, 361
Bme1390I	CCNGG	2 cut(s)	251, 504
BmgT120I	GGNCC	1 cut(s)	506
BmrFI	CCNGG	2 cut(s)	251, 504
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	442
BmuI	ACTGGG	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	187
BsaJI	CCNNGG	3 cut(s)	249, 363, 503
BsaWI	WCCGGW	1 cut(s)	333
Bse118I	RCCGGY	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	117
Bse21I	CCTNAGG	1 cut(s)	471
Bse3DI	GCAATG	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	251, 504
BseDI	CCNNGG	3 cut(s)	249, 363, 503
BseGI	GGATG	3 cut(s)	217, 283, 420
BseMI	GCAATG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	336, 462
BseNI	ACTGG	1 cut(s)	117
BseX3I	CGGCCG	1 cut(s)	360
BseYI	CCCAGC	1 cut(s)	455
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	3 cut(s)	362, 368, 508
BshTI	ACCGGT	1 cut(s)	333
BsiEI	CGRYCG	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	362, 368, 508
BspACI	CCGC	7 cut(s)	39, 49, 64, 75, 83, 359, 405
BspANI	GGCC	3 cut(s)	362, 368, 508
BspCNI	CTCAG	2 cut(s)	335, 463
BsrDI	GCAATG	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	333
BssECI	CCNNGG	3 cut(s)	249, 363, 503
BssNI	GRCGYC	1 cut(s)	187
Bst2UI	CCWGG	2 cut(s)	251, 504
Bst4CI	ACNGT	2 cut(s)	61, 443
BstACI	GRCGYC	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	51, 93
BstDEI	CTNAG	2 cut(s)	322, 471
BstF5I	GGATG	3 cut(s)	217, 283, 420
BstMAI	GTCTC	1 cut(s)	304
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 365
BstNI	CCWGG	2 cut(s)	251, 504
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	249, 502
BstZI	CGGCCG	1 cut(s)	360
Bsu36I	CCTNAGG	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	362, 368, 508
BtsCI	GGATG	3 cut(s)	217, 283, 420
Cac8I	GCNNGC	2 cut(s)	51, 93
Cfr10I	RCCGGY	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	506
CseI	GACGC	2 cut(s)	169, 176
CspAI	ACCGGT	1 cut(s)	333
CviAII	CATG	2 cut(s)	105, 217
CviJI	RGCY	7 cut(s)	53, 136, 289, 362, 368, 419, 508
CviKI_1	RGCY	7 cut(s)	53, 136, 289, 362, 368, 419, 508
DdeI	CTNAG	2 cut(s)	322, 471
EaeI	YGGCCR	1 cut(s)	360
EagI	CGGCCG	1 cut(s)	360
EclXI	CGGCCG	1 cut(s)	360
Eco52I	CGGCCG	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	410
Eco81I	CCTNAGG	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	249, 502
FaeI	CATG	2 cut(s)	108, 220
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FatI	CATG	2 cut(s)	104, 216
FauI	CCCGC	4 cut(s)	32, 42, 57, 68
FauNDI	CATATG	2 cut(s)	97, 478
Fnu4HI	GCNGC	2 cut(s)	84, 360
FokI	GGATG	3 cut(s)	224, 290, 407
Fsp4HI	GCNGC	2 cut(s)	84, 360
GluI	GCNGC	2 cut(s)	84, 360
GsaI	CCCAGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	362, 368, 508
HapII	CCGG	1 cut(s)	334
HgaI	GACGC	2 cut(s)	169, 176
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	108, 220
HinfI	GANTC	1 cut(s)	485
HpaII	CCGG	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	4 cut(s)	177, 267, 325, 490
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	2 cut(s)	192, 514
HpyAV	CCTTC	9 cut(s)	36, 143, 186, 202, 255, 262, 275, 434, 505
HpyCH4III	ACNGT	2 cut(s)	61, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 365
HpyF3I	CTNAG	2 cut(s)	322, 471
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	108, 220
LmnI	GCTCC	2 cut(s)	154, 177
LweI	GCATC	1 cut(s)	442
MboII	GAAGA	2 cut(s)	424, 494
MluCI	AATT	2 cut(s)	354, 524
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	5 cut(s)	112, 247, 319, 358, 466
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	2 cut(s)	21, 56
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	2 cut(s)	251, 504
MvaI	CCWGG	2 cut(s)	251, 504
MwoI	GCNNNNNNNGC	2 cut(s)	92, 365
NdeI	CATATG	2 cut(s)	97, 478
NlaIII	CATG	2 cut(s)	108, 220
NmeAIII	GCCGAG	1 cut(s)	388
NspI	RCATGY	1 cut(s)	220
PciI	ACATGT	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	485
PinAI	ACCGGT	1 cut(s)	333
PkrI	GCNGC	2 cut(s)	85, 361
PscI	ACATGT	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	249, 502
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	2 cut(s)	249, 502
PspPI	GGNCC	1 cut(s)	506
SaqAI	TTAA	2 cut(s)	21, 56
SatI	GCNGC	2 cut(s)	84, 360
Sau96I	GGNCC	1 cut(s)	506
ScrFI	CCNGG	2 cut(s)	251, 504
SetI	ASST	5 cut(s)	175, 273, 291, 432, 472
SfaNI	GCATC	1 cut(s)	442
Sse9I	AATT	2 cut(s)	354, 524
SsiI	CCGC	7 cut(s)	39, 49, 64, 75, 83, 359, 405
StyD4I	CCNGG	2 cut(s)	249, 502
TaaI	ACNGT	2 cut(s)	61, 443
TaqI	TCGA	1 cut(s)	190
TasI	AATT	2 cut(s)	354, 524
TauI	GCSGC	2 cut(s)	86, 362
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	2 cut(s)	21, 56
Tru9I	TTAA	2 cut(s)	21, 56
TspDTI	ATGAA	3 cut(s)	294, 366, 495
XapI	RAATTY	1 cut(s)	524
XceI	RCATGY	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	510
XmnI	GAANNNNTTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.