Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

80171365 .. 80173303

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG566600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGTTCAGATACTCAATACCAAATTCCGGCAATAGAATTCACAATGAATTCGCTTGAAGTGGACCGAGGAACTGTTGAGTGGTACCATCTGTGCAAGAAGGTTCGAGAGGCTTGTGAAAATTATGGTTGCTTCGAGATTGTGTATGATAAGATACCTCCGCAGACAAAAGCCGAAATCCTTTCAGCTTCAAGGAAACTTTACAGCCTTCCACTTGAGACAAAGAAGAACAACCTTACCCCAAACCGTTACCAGGGTTACCTTGGACCGAGTGTCACTGCTCCCTTGTATGAAGGCTTTGGCTTTCAGGAAGCATCCAACTATGAATCCCTTAGAAGCTTCACAGAAGAAATATGGTCTCATGACCAGTTTTGCACTTTCCTTTCTACGATGAAGCAGCTGGATGAGCTGAGAGATATGATTCACTTGATGATTCTTGATAGCTATGGTTTGGAAAAATCATCAAATTTGATCATGGTGTCTAAGACGCTGCTACGGTTACAGAAGTACACGGCACCTCCTTCAGGGGAGTACGCGATGGCTGCCCCGGCTCACACTGACAAGAATTTTAGCACAATCCTTTTCGATGATCAAGTTTCAGGTCTTGAAGTTCAAACCAAGGACGAACAATGGGTCAAGTTGCCTATATCTCCTTGCTCTTTCATCTTTGCTGTCGGAGACTTCCTCATGCTTGCTATGGGGAAATTGACCACACACAACTTACAATTGATGATTCAAAAGTTCCACACAAAGTTTGACAATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

255

Amino Acids

29.25

Weight (kDa)

5.52

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	27 - 90	4e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	166 - 237	1.1e-09	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 514
AccII	CGCG	1 cut(s)	536
AciI	CCGC	1 cut(s)	161
AcsI	RAATTY	5 cut(s)	24, 38, 49, 466, 565
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	3 cut(s)	86, 509, 533
AfiI	CCNNNNNNNGG	3 cut(s)	28, 253, 524
AgsI	TTSAA	5 cut(s)	59, 192, 608, 614, 737
AhdI	GACNNNNNGTC	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	5 cut(s)	188, 339, 400, 409, 444
AluI	AGCT	5 cut(s)	188, 339, 400, 409, 444
Alw26I	GTCTC	3 cut(s)	212, 363, 672
ApeKI	GCWGC	3 cut(s)	397, 490, 542
ApoI	RAATTY	5 cut(s)	24, 38, 49, 466, 565
ArsI	GACNNNNNNTTYG	2 cut(s)	618, 650
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	64, 266
AsuC2I	CCSGG	1 cut(s)	548
AvaII	GGWCC	2 cut(s)	64, 266
BanI	GGYRCC	2 cut(s)	84, 514
BbvI	GCAGC	3 cut(s)	409, 477, 529
BccI	CCATC	2 cut(s)	96, 532
BceAI	ACGGC	1 cut(s)	528
BciT130I	CCWGG	1 cut(s)	254
BclI	TGATCA	2 cut(s)	471, 589
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	3 cut(s)	212, 363, 672
BisI	GCNGC	3 cut(s)	398, 491, 543
BlsI	GCNGC	3 cut(s)	399, 492, 544
Bme1390I	CCNGG	2 cut(s)	254, 548
Bme18I	GGWCC	2 cut(s)	64, 266
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	64, 266
BmiI	GGNNCC	2 cut(s)	86, 516
BmrFI	CCNGG	2 cut(s)	254, 548
BmsI	GCATC	1 cut(s)	323
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	548
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	5 cut(s)	67, 253, 262, 546, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 253, 524
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	5 cut(s)	67, 253, 262, 546, 618
BseGI	GGATG	2 cut(s)	314, 409
BseLI	CCNNNNNNNGG	3 cut(s)	28, 253, 524
BseMII	CTCAG	1 cut(s)	401
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	3 cut(s)	409, 477, 529
Bsh1236I	CGCG	1 cut(s)	536
BshNI	GGYRCC	2 cut(s)	84, 514
BsiSI	CCGG	2 cut(s)	29, 548
BslI	CCNNNNNNNGG	3 cut(s)	28, 253, 524
BsmAI	GTCTC	3 cut(s)	212, 363, 672
Bso31I	GGTCTC	1 cut(s)	363
Bsp143I	GATC	2 cut(s)	471, 589
BspACI	CCGC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	402
BspFNI	CGCG	1 cut(s)	536
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	86, 516
BspT107I	GGYRCC	2 cut(s)	84, 514
BspTNI	GGTCTC	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	5 cut(s)	67, 253, 262, 546, 618
BssMI	GATC	2 cut(s)	471, 589
BssT1I	CCWWGG	2 cut(s)	262, 618
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	3 cut(s)	76, 248, 498
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	3 cut(s)	332, 410, 483
BstEII	GGTNACC	1 cut(s)	257
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstF5I	GGATG	2 cut(s)	314, 409
BstFNI	CGCG	1 cut(s)	536
BstKTI	GATC	2 cut(s)	474, 592
BstMAI	GTCTC	3 cut(s)	212, 363, 672
BstMBI	GATC	2 cut(s)	471, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	406, 542, 548
BstNI	CCWGG	1 cut(s)	254
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	252, 546
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	3 cut(s)	409, 477, 529
BtgZI	GCGATG	1 cut(s)	551
BtsCI	GGATG	2 cut(s)	314, 409
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	2 cut(s)	276, 555
Cac8I	GCNNGC	1 cut(s)	693
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	64, 266
CseI	GACGC	1 cut(s)	496
Csp6I	GTAC	3 cut(s)	85, 508, 532
CviAII	CATG	3 cut(s)	362, 475, 688
CviQI	GTAC	3 cut(s)	85, 508, 532
DdeI	CTNAG	3 cut(s)	332, 410, 483
DpnI	GATC	2 cut(s)	473, 591
DpnII	GATC	2 cut(s)	471, 589
DriI	GACNNNNNGTC	1 cut(s)	272
Eam1105I	GACNNNNNGTC	1 cut(s)	272
Eco130I	CCWWGG	2 cut(s)	262, 618
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	64, 266
Eco57I	CTGAAG	1 cut(s)	507
Eco91I	GGTNACC	1 cut(s)	257
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	2 cut(s)	38, 49
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	2 cut(s)	262, 618
ErhI	CCWWGG	2 cut(s)	262, 618
FaeI	CATG	3 cut(s)	365, 478, 691
FatI	CATG	3 cut(s)	361, 474, 687
FbaI	TGATCA	2 cut(s)	471, 589
Fnu4HI	GCNGC	3 cut(s)	398, 491, 543
FokI	GGATG	2 cut(s)	301, 416
Fsp4HI	GCNGC	3 cut(s)	398, 491, 543
GluI	GCNGC	3 cut(s)	398, 491, 543
HapII	CCGG	2 cut(s)	29, 548
HgaI	GACGC	1 cut(s)	496
Hin1II	CATG	3 cut(s)	365, 478, 691
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	4 cut(s)	326, 421, 433, 733
HpaII	CCGG	2 cut(s)	29, 548
Hpy166II	GTNNAC	2 cut(s)	64, 510
Hpy188I	TCNGA	2 cut(s)	10, 677
Hpy188III	TCNNGA	6 cut(s)	107, 136, 308, 362, 437, 605
Hpy8I	GTNNAC	2 cut(s)	64, 510
HpyAV	CCTTC	4 cut(s)	94, 218, 287, 531
HpyCH4III	ACNGT	3 cut(s)	76, 248, 498
HpyCH4V	TGCA	2 cut(s)	96, 375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	406, 542, 548
HpyF3I	CTNAG	3 cut(s)	332, 410, 483
Hsp92II	CATG	3 cut(s)	365, 478, 691
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	471, 589
Kzo9I	GATC	2 cut(s)	471, 589
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	9 cut(s)	42, 239, 266, 293, 380, 386, 510, 561, 585
Lsp1109I	GCAGC	3 cut(s)	409, 477, 529
LweI	GCATC	1 cut(s)	323
MaeIII	GTNAC	4 cut(s)	248, 257, 274, 498
MalI	GATC	2 cut(s)	473, 591
MboI	GATC	2 cut(s)	471, 589
MboII	GAAGA	2 cut(s)	238, 359
MfeI	CAATTG	1 cut(s)	725
MluCI	AATT	8 cut(s)	24, 38, 49, 121, 466, 565, 704, 725
MmeI	TCCRAC	2 cut(s)	342, 655
MnlI	CCTC	5 cut(s)	62, 103, 168, 528, 695
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	2 cut(s)	29, 548
MspR9I	CCNGG	2 cut(s)	254, 548
MunI	CAATTG	1 cut(s)	725
MvaI	CCWGG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	406, 542, 548
NciI	CCSGG	1 cut(s)	548
NdeII	GATC	2 cut(s)	471, 589
NlaIII	CATG	3 cut(s)	365, 478, 691
NlaIV	GGNNCC	2 cut(s)	86, 516
NmuCI	GTSAC	1 cut(s)	274
PagI	TCATGA	1 cut(s)	361
PfeI	GAWTC	4 cut(s)	326, 421, 433, 733
PkrI	GCNGC	3 cut(s)	399, 492, 544
Psp6I	CCWGG	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	86, 516
PspPI	GGNCC	2 cut(s)	64, 266
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	3 cut(s)	86, 509, 533
RsaNI	GTAC	3 cut(s)	85, 508, 532
SatI	GCNGC	3 cut(s)	398, 491, 543
Sau3AI	GATC	2 cut(s)	471, 589
Sau96I	GGNCC	2 cut(s)	64, 266
ScrFI	CCNGG	2 cut(s)	254, 548
SfaNI	GCATC	1 cut(s)	323
SinI	GGWCC	2 cut(s)	64, 266
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	8 cut(s)	24, 38, 49, 121, 466, 565, 704, 725
SsiI	CCGC	1 cut(s)	161
StyD4I	CCNGG	2 cut(s)	252, 546
StyI	CCWWGG	2 cut(s)	262, 618
TaaI	ACNGT	3 cut(s)	76, 248, 498
TaqI	TCGA	3 cut(s)	106, 135, 585
TaqII	GACCGA	2 cut(s)	81, 283
TasI	AATT	8 cut(s)	24, 38, 49, 121, 466, 565, 704, 725
TatI	WGTACW	1 cut(s)	507
TfiI	GAWTC	4 cut(s)	326, 421, 433, 733
TscAI	CASTG	2 cut(s)	283, 562
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	3 cut(s)	397, 490, 542
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	5 cut(s)	62, 306, 339, 407, 652
TspRI	CASTG	2 cut(s)	283, 562
VpaK11BI	GGWCC	2 cut(s)	64, 266
XagI	CCTNNNNNAGG	1 cut(s)	522
XapI	RAATTY	5 cut(s)	24, 38, 49, 466, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.