Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

85596969 .. 85598440

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036840

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGTTCAGATTCTCAATACCAGATTCCGGCAATAGAATTCACAATTAATTCGCTTGAAGTGGACCGAGGAACTGATGAGTGGTACCATCTGTGCAAGAAGGTTCGAGAGGCTTGTGAAAATTATGGTTGCTTCGAAATTGTGTATGATAAGATACCTCCGCAGTCAAAAGCCGAAACCCTCTCGGCTTCAAGGAAACTTTACAGCCTTCCACTTGAGACAAAGAAGAACAACCTTAATCCAAACCGTTACCAGGGTTACATTGGACCGAGTGACTTTCTTCCCTTGTATGAAGGCTTTGGCTTTATGGAAGCATCCAACTCTGAATCCCTTAGAAGCTTCACAGAAGAAATATGGTCTCATGACCAGTTTTGCACTGTCCTTTCTGTGATGAAGCAGCTGGATGAGCTGAAAGATATGATTCACTTGATGATTCTTGATAGCTATGGTTTGGAAGAATCCTCAAATTTGATCATGGTATCTAAGACGCTGCTACGGTTACAGCAGTACACGGCACCTCCTTCAGGGGAGTACACGACGGGTATCCCGGCTCACACTGACAAGACTTTGAGCACAATCCTTTTCGATGATCATGTTTCAGGTCTTGAAGTTCAAACCAAGGATGAACAATGGGTCAAGTTGCCTATATCTCCTTGCTCTTTCATCTTTGTTGTTGGAGACTTCCTCATGGCATGGAGCAATGGCAGAATGCATTCTGTGAAGCATCGGGTGATGATGTGTGGGGAAAAAGAACGACATTCCTTAACAGCATCTGCATTTCCAGCAGAGGGTTTCATCATCAAAGCACAAAAGGAGCTAGTAGATGAAGACTACCCACCAATTCTTAAAGATTTCGACTATACAGAATTTTTAAAGTTCATCTGTTCATCAGAAGGAAGAGCCATCGACTCACAAATGCAAGTTTACGCATTTGCTGGAATTGGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

317

Amino Acids

35.96

Weight (kDa)

4.93

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	24 - 90	1.2e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	167 - 256	5.2e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 514
AciI	CCGC	1 cut(s)	161
AcsI	RAATTY	3 cut(s)	38, 466, 866
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	3 cut(s)	86, 509, 533
AfiI	CCNNNNNNNGG	4 cut(s)	28, 253, 524, 788
AgsI	TTSAA	4 cut(s)	59, 192, 608, 614
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	5 cut(s)	339, 400, 409, 444, 817
AluI	AGCT	5 cut(s)	339, 400, 409, 444, 817
Alw21I	GWGCWC	1 cut(s)	575
Alw26I	GTCTC	3 cut(s)	212, 363, 672
AlwNI	CAGNNNCTG	1 cut(s)	773
ApeKI	GCWGC	2 cut(s)	397, 490
ApoI	RAATTY	3 cut(s)	38, 466, 866
AseI	ATTAAT	1 cut(s)	48
Asp700I	GAANNNNTTC	1 cut(s)	712
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	64, 266
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	742
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	64, 266
BanI	GGYRCC	2 cut(s)	84, 514
BbsI	GAAGAC	1 cut(s)	834
Bbv12I	GWGCWC	1 cut(s)	575
BbvI	GCAGC	2 cut(s)	409, 477
BccI	CCATC	2 cut(s)	96, 911
BceAI	ACGGC	1 cut(s)	528
BciT130I	CCWGG	1 cut(s)	254
BciVI	GTATCC	1 cut(s)	554
BclI	TGATCA	2 cut(s)	471, 589
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	3 cut(s)	212, 363, 672
BfaI	CTAG	1 cut(s)	818
BfuI	GTATCC	1 cut(s)	554
BisI	GCNGC	2 cut(s)	398, 491
BlsI	GCNGC	2 cut(s)	399, 492
Bme1390I	CCNGG	2 cut(s)	254, 548
Bme18I	GGWCC	2 cut(s)	64, 266
BmgT120I	GGNCC	2 cut(s)	64, 266
BmiI	GGNNCC	2 cut(s)	86, 516
BmrFI	CCNGG	2 cut(s)	254, 548
BmsI	GCATC	3 cut(s)	323, 733, 779
BpiI	GAAGAC	1 cut(s)	834
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	548
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	67, 253, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 253, 524, 788
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	706
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	3 cut(s)	67, 253, 618
BseGI	GGATG	3 cut(s)	314, 409, 628
BseLI	CCNNNNNNNGG	4 cut(s)	28, 253, 524, 788
BseMI	GCAATG	1 cut(s)	706
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	409, 477
BshNI	GGYRCC	2 cut(s)	84, 514
BsiHKAI	GWGCWC	1 cut(s)	575
BsiSI	CCGG	2 cut(s)	29, 548
BslI	CCNNNNNNNGG	4 cut(s)	28, 253, 524, 788
BsmAI	GTCTC	3 cut(s)	212, 363, 672
BsmI	GAATGC	2 cut(s)	712, 714
Bso31I	GGTCTC	1 cut(s)	363
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	575
Bsp143I	GATC	2 cut(s)	471, 589
BspACI	CCGC	1 cut(s)	161
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	86, 516
BspQI	GCTCTTC	1 cut(s)	892
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	2 cut(s)	84, 514
BspTNI	GGTCTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	706
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	67, 253, 618
BssMI	GATC	2 cut(s)	471, 589
BssT1I	CCWWGG	1 cut(s)	618
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	3 cut(s)	248, 379, 498
Bst6I	CTCTTC	1 cut(s)	892
BstBI	TTCGAA	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	332, 483
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstF5I	GGATG	3 cut(s)	314, 409, 628
BstKTI	GATC	2 cut(s)	474, 592
BstMAI	GTCTC	3 cut(s)	212, 363, 672
BstMBI	GATC	2 cut(s)	471, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 782
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	252, 546
BstV1I	GCAGC	2 cut(s)	409, 477
BstV2I	GAAGAC	1 cut(s)	834
BsuI	GTATCC	1 cut(s)	554
BtsCI	GGATG	3 cut(s)	314, 409, 628
BtsIMutI	CAGTG	2 cut(s)	375, 555
CaiI	CAGNNNCTG	1 cut(s)	773
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	64, 266
CseI	GACGC	1 cut(s)	496
Csp6I	GTAC	3 cut(s)	85, 508, 532
CviAII	CATG	5 cut(s)	362, 475, 593, 688, 693
CviQI	GTAC	3 cut(s)	85, 508, 532
DdeI	CTNAG	2 cut(s)	332, 483
DpnI	GATC	2 cut(s)	473, 591
DpnII	GATC	2 cut(s)	471, 589
DraI	TTTAAA	1 cut(s)	873
Eam1104I	CTCTTC	1 cut(s)	892
EarI	CTCTTC	1 cut(s)	892
Eco130I	CCWWGG	1 cut(s)	618
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	64, 266
Eco57I	CTGAAG	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoRI	GAATTC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	618
EcoT22I	ATGCAT	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	5 cut(s)	365, 478, 596, 691, 696
FatI	CATG	5 cut(s)	361, 474, 592, 687, 692
FbaI	TGATCA	2 cut(s)	471, 589
Fnu4HI	GCNGC	2 cut(s)	398, 491
FokI	GGATG	3 cut(s)	301, 416, 635
Fsp4HI	GCNGC	2 cut(s)	398, 491
FspBI	CTAG	1 cut(s)	818
GluI	GCNGC	2 cut(s)	398, 491
HapII	CCGG	2 cut(s)	29, 548
HgaI	GACGC	1 cut(s)	496
Hin1II	CATG	5 cut(s)	365, 478, 596, 691, 696
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	7 cut(s)	11, 25, 326, 421, 433, 458, 908
HpaII	CCGG	2 cut(s)	29, 548
HphI	GGTGA	1 cut(s)	742
Hpy166II	GTNNAC	4 cut(s)	64, 510, 534, 925
Hpy188I	TCNGA	3 cut(s)	10, 325, 892
Hpy188III	TCNNGA	4 cut(s)	107, 362, 437, 605
Hpy8I	GTNNAC	4 cut(s)	64, 510, 534, 925
Hpy99I	CGWCG	1 cut(s)	541
HpyAV	CCTTC	5 cut(s)	94, 218, 287, 531, 887
HpyCH4III	ACNGT	3 cut(s)	248, 379, 498
HpyCH4V	TGCA	5 cut(s)	96, 375, 712, 776, 919
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 782
HpyF3I	CTNAG	2 cut(s)	332, 483
Hsp92II	CATG	5 cut(s)	365, 478, 596, 691, 696
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	471, 589
Kzo9I	GATC	2 cut(s)	471, 589
LguI	GCTCTTC	1 cut(s)	892
LmnI	GCTCC	2 cut(s)	696, 814
Lsp1109I	GCAGC	2 cut(s)	409, 477
LweI	GCATC	3 cut(s)	323, 733, 779
MaeI	CTAG	1 cut(s)	818
MaeIII	GTNAC	4 cut(s)	248, 257, 272, 498
MalI	GATC	2 cut(s)	473, 591
MboI	GATC	2 cut(s)	471, 589
MboII	GAAGA	6 cut(s)	238, 272, 359, 467, 839, 909
MhlI	GDGCHC	1 cut(s)	575
MluCI	AATT	9 cut(s)	38, 45, 49, 121, 138, 466, 840, 866, 939
MlyI	GAGTC	1 cut(s)	902
MmeI	TCCRAC	2 cut(s)	342, 655
MnlI	CCTC	8 cut(s)	62, 103, 168, 191, 472, 528, 695, 781
Mph1103I	ATGCAT	1 cut(s)	714
MroXI	GAANNNNTTC	1 cut(s)	712
MseI	TTAA	5 cut(s)	48, 237, 764, 846, 872
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	2 cut(s)	29, 548
MspR9I	CCNGG	2 cut(s)	254, 548
Mva1269I	GAATGC	2 cut(s)	712, 714
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	406, 782
NciI	CCSGG	1 cut(s)	548
NdeII	GATC	2 cut(s)	471, 589
NlaIII	CATG	5 cut(s)	365, 478, 596, 691, 696
NlaIV	GGNNCC	2 cut(s)	86, 516
NmeAIII	GCCGAG	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	714
NspV	TTCGAA	1 cut(s)	135
PagI	TCATGA	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	892
PctI	GAATGC	2 cut(s)	712, 714
PdmI	GAANNNNTTC	1 cut(s)	712
PfeI	GAWTC	6 cut(s)	11, 25, 326, 421, 433, 458
PkrI	GCNGC	2 cut(s)	399, 492
PleI	GAGTC	1 cut(s)	902
PpsI	GAGTC	1 cut(s)	902
PshBI	ATTAAT	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	86, 516
PspPI	GGNCC	2 cut(s)	64, 266
PstNI	CAGNNNCTG	1 cut(s)	773
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	3 cut(s)	86, 509, 533
RsaNI	GTAC	3 cut(s)	85, 508, 532
SapI	GCTCTTC	1 cut(s)	892
SaqAI	TTAA	5 cut(s)	48, 237, 764, 846, 872
SatI	GCNGC	2 cut(s)	398, 491
Sau3AI	GATC	2 cut(s)	471, 589
Sau96I	GGNCC	2 cut(s)	64, 266
SchI	GAGTC	1 cut(s)	902
ScrFI	CCNGG	2 cut(s)	254, 548
SduI	GDGCHC	1 cut(s)	575
SfaNI	GCATC	3 cut(s)	323, 733, 779
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	2 cut(s)	64, 266
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	9 cut(s)	38, 45, 49, 121, 138, 466, 840, 866, 939
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	818
StyD4I	CCNGG	2 cut(s)	252, 546
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	3 cut(s)	248, 379, 498
TaqI	TCGA	5 cut(s)	106, 135, 585, 855, 906
TaqII	GACCGA	2 cut(s)	81, 283
TasI	AATT	9 cut(s)	38, 45, 49, 121, 138, 466, 840, 866, 939
TatI	WGTACW	2 cut(s)	507, 531
TfiI	GAWTC	6 cut(s)	11, 25, 326, 421, 433, 458
Tru1I	TTAA	5 cut(s)	48, 237, 764, 846, 872
Tru9I	TTAA	5 cut(s)	48, 237, 764, 846, 872
TscAI	CASTG	2 cut(s)	382, 562
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	397, 490
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	8 cut(s)	306, 407, 639, 652, 784, 840, 868, 876
TspRI	CASTG	2 cut(s)	382, 562
VpaK11BI	GGWCC	2 cut(s)	64, 266
VspI	ATTAAT	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	522
XapI	RAATTY	3 cut(s)	38, 466, 866
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	712
XspI	CTAG	1 cut(s)	818
Zsp2I	ATGCAT	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.