Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

16888487 .. 16889977

Gene Structure 1491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23801.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGTTCAGATTCTCCATACCAGATTCCGGCAATAGAATTCACAATGAATTCGCCAGAACTGGACCGAGGAACTGATGAGTGGTACCTTCTGTGCAAGAAGGTTCGAGAGGCTTGTGAAAATTATGGTTGCTTCGAAATTGTGTATGATAAGATACCCCCGCAGTTAAGAGCCGAATTCTTCTCAGCGTCAAGAAAACTTTTCAGCCTTCCCCTTGAGACAAAGAAGAAGAACACTTATCCAAATCCTTACTCCGGTTACCTTGGACTGAGTGCTGTTGCTCCCTTGTACGAAAGCTTTGGCTTTGAAGAAGCATCCGACTATGAATCCCTTAGAAGCTTCACAGAAGAAATATGGTCTCGTGACGAGCTTTGCACTGTCCTTTCTATGATGAAGCAGCTGGACGAATTGAAAGATATGATTCACTTGATCATTCTTGATAGCTATGGTTTGAAAGAATCATCAAATTCGATAATGGTGACTAAGAGACTGCTAAAGTTAATGAAGTATACGGCACCTCCTTCAGGGGAGTACACGATGGCTGCTCCGGCTCACACAGACAAGAATTTTGGCACAATCCTTTGTGATGATCAAGTTTCATGTCTTGAAGTTCAAACCAAGGATGGGCAATGGGTCAAGTTGCCTATACCTCCTCGCTCTTTCGTCTTTAATATTGGAGACTCCCTCGACCCTCATGGCATGGAGCAATGGCAGAATGCATTCTGTGTCTCATCGGGTGATGATGTGCGGGGACAAAGAACGACATTCCCTAGCAGCATTTGCACAACCAATAGAGGGTTCCATCATCAAAGCACAAAAGGAGCTGGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

278

Amino Acids

31.38

Weight (kDa)

5.25

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	25 - 90	6.2e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	170 - 229	2.6e-08	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 514
AccI	GTMKAC	1 cut(s)	509
AciI	CCGC	2 cut(s)	161, 748
AcsI	RAATTY	5 cut(s)	38, 49, 176, 466, 565
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	3 cut(s)	86, 290, 533
AfiI	CCNNNNNNNGG	5 cut(s)	28, 254, 524, 624, 795
AgsI	TTSAA	5 cut(s)	308, 412, 454, 608, 614
AjuI	GAANNNNNNNTTGG	2 cut(s)	782, 814
AluBI	AGCT	6 cut(s)	297, 339, 370, 400, 444, 824
AluI	AGCT	6 cut(s)	297, 339, 370, 400, 444, 824
Alw26I	GTCTC	5 cut(s)	212, 363, 481, 672, 733
ApeKI	GCWGC	3 cut(s)	397, 542, 774
ApoI	RAATTY	5 cut(s)	38, 49, 176, 466, 565
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
Asp700I	GAANNNNTTC	1 cut(s)	719
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	490, 749
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	64
BanI	GGYRCC	2 cut(s)	84, 514
BauI	CACGAG	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	409, 529, 786
BccI	CCATC	3 cut(s)	532, 617, 810
BceAI	ACGGC	1 cut(s)	528
BclI	TGATCA	2 cut(s)	429, 589
BcoDI	GTCTC	5 cut(s)	212, 363, 481, 672, 733
BfaI	CTAG	1 cut(s)	771
BisI	GCNGC	3 cut(s)	398, 543, 775
BlsI	GCNGC	3 cut(s)	399, 544, 776
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	3 cut(s)	86, 516, 800
BmsI	GCATC	1 cut(s)	323
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	67, 262, 618
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 254, 524, 624, 795
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	2 cut(s)	635, 713
BseDI	CCNNGG	3 cut(s)	67, 262, 618
BseGI	GGATG	2 cut(s)	314, 628
BseLI	CCNNNNNNNGG	5 cut(s)	28, 254, 524, 624, 795
BseMI	GCAATG	2 cut(s)	635, 713
BseMII	CTCAG	2 cut(s)	198, 260
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	642
BseXI	GCAGC	3 cut(s)	409, 529, 786
BshNI	GGYRCC	2 cut(s)	84, 514
BsiSI	CCGG	3 cut(s)	29, 255, 548
BslFI	GGGAC	1 cut(s)	765
BslI	CCNNNNNNNGG	5 cut(s)	28, 254, 524, 624, 795
BsmAI	GTCTC	5 cut(s)	212, 363, 481, 672, 733
BsmFI	GGGAC	1 cut(s)	765
BsmI	GAATGC	2 cut(s)	719, 721
Bso31I	GGTCTC	1 cut(s)	363
Bsp119I	TTCGAA	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	429, 589
BspACI	CCGC	2 cut(s)	161, 748
BspCNI	CTCAG	2 cut(s)	197, 261
BspLI	GGNNCC	3 cut(s)	86, 516, 800
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	2 cut(s)	84, 514
BspTNI	GGTCTC	1 cut(s)	363
BsrDI	GCAATG	2 cut(s)	635, 713
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	3 cut(s)	67, 262, 618
BssMI	GATC	2 cut(s)	429, 589
BssNAI	GTATAC	1 cut(s)	510
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	2 cut(s)	262, 618
Bst1107I	GTATAC	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	379
BstAPI	GCANNNNNTGC	1 cut(s)	780
BstBI	TTCGAA	1 cut(s)	135
BstDEI	CTNAG	4 cut(s)	184, 269, 332, 483
BstEII	GGTNACC	1 cut(s)	257
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstF5I	GGATG	2 cut(s)	314, 628
BstKTI	GATC	2 cut(s)	432, 592
BstMAI	GTCTC	5 cut(s)	212, 363, 481, 672, 733
BstMBI	GATC	2 cut(s)	429, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	548, 780
BstPI	GGTNACC	1 cut(s)	257
BstV1I	GCAGC	3 cut(s)	409, 529, 786
BstZ17I	GTATAC	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	314, 628
BtsIMutI	CAGTG	1 cut(s)	375
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	3 cut(s)	85, 289, 532
CviAII	CATG	3 cut(s)	600, 695, 700
CviQI	GTAC	3 cut(s)	85, 289, 532
DdeI	CTNAG	4 cut(s)	184, 269, 332, 483
DpnI	GATC	2 cut(s)	431, 591
DpnII	GATC	2 cut(s)	429, 589
Eco130I	CCWWGG	2 cut(s)	262, 618
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	507
Eco91I	GGTNACC	1 cut(s)	257
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	3 cut(s)	38, 49, 176
EcoT14I	CCWWGG	2 cut(s)	262, 618
EcoT22I	ATGCAT	1 cut(s)	721
ErhI	CCWWGG	2 cut(s)	262, 618
FaeI	CATG	3 cut(s)	603, 698, 703
FaqI	GGGAC	1 cut(s)	765
FatI	CATG	3 cut(s)	599, 694, 699
FauI	CCCGC	2 cut(s)	168, 741
FbaI	TGATCA	2 cut(s)	429, 589
FblI	GTMKAC	1 cut(s)	509
Fnu4HI	GCNGC	3 cut(s)	398, 543, 775
FokI	GGATG	2 cut(s)	301, 635
Fsp4HI	GCNGC	3 cut(s)	398, 543, 775
FspBI	CTAG	1 cut(s)	771
GluI	GCNGC	3 cut(s)	398, 543, 775
HapII	CCGG	3 cut(s)	29, 255, 548
HgaI	GACGC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	603, 698, 703
HindIII	AAGCTT	2 cut(s)	295, 337
HinfI	GANTC	6 cut(s)	11, 25, 326, 421, 458, 680
HpaII	CCGG	3 cut(s)	29, 255, 548
HphI	GGTGA	2 cut(s)	490, 749
Hpy166II	GTNNAC	2 cut(s)	510, 534
Hpy188I	TCNGA	2 cut(s)	10, 319
Hpy188III	TCNNGA	5 cut(s)	107, 192, 362, 437, 605
Hpy8I	GTNNAC	2 cut(s)	510, 534
HpyAV	CCTTC	4 cut(s)	94, 98, 218, 531
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4V	TGCA	4 cut(s)	96, 375, 719, 783
HpyF10VI	GCNNNNNNNGC	2 cut(s)	548, 780
HpyF3I	CTNAG	4 cut(s)	184, 269, 332, 483
Hsp92II	CATG	3 cut(s)	603, 698, 703
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	429, 589
Kzo9I	GATC	2 cut(s)	429, 589
LmnI	GCTCC	4 cut(s)	286, 550, 703, 821
LpnPI	CCDG	9 cut(s)	35, 42, 47, 69, 268, 386, 510, 561, 810
Lsp1109I	GCAGC	3 cut(s)	409, 529, 786
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	771
MaeIII	GTNAC	3 cut(s)	257, 362, 478
MalI	GATC	2 cut(s)	431, 591
MboI	GATC	2 cut(s)	429, 589
MboII	GAAGA	5 cut(s)	172, 238, 241, 320, 359
MluCI	AATT	8 cut(s)	38, 49, 121, 138, 176, 407, 466, 565
MlyI	GAGTC	1 cut(s)	674
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	8 cut(s)	62, 103, 528, 660, 663, 695, 702, 788
Mph1103I	ATGCAT	1 cut(s)	721
MroXI	GAANNNNTTC	1 cut(s)	719
MseI	TTAA	3 cut(s)	167, 500, 669
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	3 cut(s)	29, 255, 548
Mva1269I	GAATGC	2 cut(s)	719, 721
MwoI	GCNNNNNNNGC	2 cut(s)	548, 780
NdeII	GATC	2 cut(s)	429, 589
NlaIII	CATG	3 cut(s)	603, 698, 703
NlaIV	GGNNCC	3 cut(s)	86, 516, 800
NmuCI	GTSAC	2 cut(s)	362, 478
NsiI	ATGCAT	1 cut(s)	721
NspV	TTCGAA	1 cut(s)	135
PctI	GAATGC	2 cut(s)	719, 721
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	5 cut(s)	11, 25, 326, 421, 458
PkrI	GCNGC	3 cut(s)	399, 544, 776
PleI	GAGTC	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	674
PspEI	GGTNACC	1 cut(s)	257
PspN4I	GGNNCC	3 cut(s)	86, 516, 800
PspPI	GGNCC	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	3 cut(s)	86, 290, 533
RsaNI	GTAC	3 cut(s)	85, 289, 532
SaqAI	TTAA	3 cut(s)	167, 500, 669
SatI	GCNGC	3 cut(s)	398, 543, 775
Sau3AI	GATC	2 cut(s)	429, 589
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	674
SfaNI	GCATC	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	8 cut(s)	38, 49, 121, 138, 176, 407, 466, 565
SsiI	CCGC	2 cut(s)	161, 748
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	1 cut(s)	771
StyI	CCWWGG	2 cut(s)	262, 618
TaaI	ACNGT	1 cut(s)	379
TaqI	TCGA	4 cut(s)	106, 135, 470, 687
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	8 cut(s)	38, 49, 121, 138, 176, 407, 466, 565
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	5 cut(s)	11, 25, 326, 421, 458
Tru1I	TTAA	3 cut(s)	167, 500, 669
Tru9I	TTAA	3 cut(s)	167, 500, 669
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	2 cut(s)	362, 478
TseI	GCWGC	3 cut(s)	397, 542, 774
Tsp45I	GTSAC	2 cut(s)	362, 478
TspDTI	ATGAA	5 cut(s)	62, 339, 407, 518, 588
TspRI	CASTG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	64
XagI	CCTNNNNNAGG	1 cut(s)	522
XapI	RAATTY	5 cut(s)	38, 49, 176, 466, 565
XmiI	GTMKAC	1 cut(s)	509
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	1 cut(s)	771
Zsp2I	ATGCAT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.